{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,14]],"date-time":"2026-10-14T04:32:37Z","timestamp":1791952357610,"version":"4.3.4"},"reference-count":94,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2018,5,1]],"date-time":"2018-05-01T00:00:00Z","timestamp":1525132800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2018,2,14]],"date-time":"2018-02-14T00:00:00Z","timestamp":1518566400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["International Journal for Parasitology"],"published-print":{"date-parts":[[2018,5]]},"DOI":"10.1016\/j.ijpara.2017.11.003","type":"journal-article","created":{"date-parts":[[2018,2,9]],"date-time":"2018-02-09T17:48:04Z","timestamp":1518198484000},"page":"403-412","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":52,"title":["The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins"],"prefix":"10.1016","volume":"48","author":[{"given":"L.E.","family":"Peachey","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.A.","family":"Molena","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"T.P.","family":"Jenkins","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"A.","family":"Di Cesare","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.","family":"Traversa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.E.","family":"Hodgkinson","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Cantacessi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.ijpara.2017.11.003_b0005","doi-asserted-by":"crossref","first-page":"434","DOI":"10.1016\/j.jaci.2011.10.025","article-title":"Low diversity of the gut microbiota in infants with atopic eczema","volume":"129","author":"Abrahamsson","year":"2012","journal-title":"J. Allergy Clin. Immunol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0010","doi-asserted-by":"crossref","first-page":"842","DOI":"10.1111\/cea.12253","article-title":"Low gut microbiota diversity in early infancy precedes asthma at school age","volume":"44","author":"Abrahamsson","year":"2014","journal-title":"Clin. Exp. Allergy"},{"key":"10.1016\/j.ijpara.2017.11.003_b0015","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1111\/j.1461-0248.2006.00926.x","article-title":"Multivariate dispersion as a measure of beta diversity","volume":"9","author":"Anderson","year":"2006","journal-title":"Ecol. Lett."},{"key":"10.1016\/j.ijpara.2017.11.003_b0020","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1016\/j.pt.2011.12.001","article-title":"Life on the edge: the balance between macrofauna, microflora and host immunity","volume":"28","author":"Bancroft","year":"2012","journal-title":"Trends Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0025","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1016\/S0304-4017(98)00210-6","article-title":"Enhancement of resistance in mice treated with Lactobacillus casei: effect on Trichinella spiralis infection","volume":"80","author":"Bautista-Garfias","year":"1999","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0030","doi-asserted-by":"crossref","first-page":"S226","DOI":"10.1051\/parasite\/200108s2226","article-title":"Effect of viable or dead Lactobacillus casei organisms administered orally to mice on resistance against Trichinella spiralis infection","volume":"8","author":"Bautista-Garfias","year":"2001","journal-title":"Parasite"},{"key":"10.1016\/j.ijpara.2017.11.003_b0035","doi-asserted-by":"crossref","first-page":"e13163","DOI":"10.14814\/phy2.13163","article-title":"Methanosphaera stadtmanae induces a type IV hypersensitivity response in a mouse model of airway inflammation","volume":"5","author":"Bernatchez","year":"2017","journal-title":"Physiol. Rep."},{"key":"10.1016\/j.ijpara.2017.11.003_b0040","doi-asserted-by":"crossref","first-page":"e23326","DOI":"10.1371\/journal.pone.0023326","article-title":"Immunogenic properties of archaeal species found in bioaerosols","volume":"6","author":"Blais Lecours","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0045","doi-asserted-by":"crossref","first-page":"382","DOI":"10.1016\/j.jpba.2009.03.028","article-title":"Isoflavone effect on gene expression profile and biomarkers of inflammation","volume":"51","author":"Blay","year":"2010","journal-title":"J. Pharm. Biomed. Anal."},{"key":"10.1016\/j.ijpara.2017.11.003_b0050","doi-asserted-by":"crossref","first-page":"e1003000","DOI":"10.1371\/journal.ppat.1003000","article-title":"Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon","volume":"8","author":"Broadhurst","year":"2012","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.ijpara.2017.11.003_b0055","doi-asserted-by":"crossref","first-page":"1431","DOI":"10.1093\/infdis\/jiu256","article-title":"Impact of experimental hookworm infection on the human gut microbiota","volume":"210","author":"Cantacessi","year":"2014","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.ijpara.2017.11.003_b0060","doi-asserted-by":"crossref","first-page":"335","DOI":"10.1038\/nmeth.f.303","article-title":"QIIME allows analysis of high-throughput community sequencing data","volume":"7","author":"Caporaso","year":"2010","journal-title":"Nat. Methods"},{"key":"10.1016\/j.ijpara.2017.11.003_b0065","doi-asserted-by":"crossref","first-page":"e0159770","DOI":"10.1371\/journal.pone.0159770","article-title":"Impact of helminth infections and nutritional constraints on the small intestine microbiota","volume":"11","author":"Cattadori","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0070","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1016\/S0034-5288(18)32448-2","article-title":"Specific identification of strongyle eggs in small samples of sheep faeces","volume":"32","author":"Christie","year":"1982","journal-title":"Res. Vet. Sci."},{"key":"10.1016\/j.ijpara.2017.11.003_b0075","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1016\/S0304-4017(02)00328-X","article-title":"Prevalence, abundance and site distribution of equine small strongyles in Normandy France","volume":"110","author":"Collobert-Laugier","year":"2002","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0080","doi-asserted-by":"crossref","first-page":"e41484","DOI":"10.1371\/journal.pone.0041484","article-title":"Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3\u2013V5 region of the 16S rRNA gene","volume":"7","author":"Costa","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0085","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1016\/j.tvjl.2015.03.018","article-title":"Characterization and comparison of the bacterial microbiota in different gastrointestinal tract compartments in horses","volume":"205","author":"Costa","year":"2015","journal-title":"Vet. J."},{"key":"10.1016\/j.ijpara.2017.11.003_b0090","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1186\/s12917-015-0335-7","article-title":"Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs","volume":"11","author":"Costa","year":"2015","journal-title":"BMC Vet. Res."},{"key":"10.1016\/j.ijpara.2017.11.003_b0095","doi-asserted-by":"crossref","first-page":"1063","DOI":"10.1017\/S0031182012000467","article-title":"New insights into sequence variation in the IGS region of 21 cyathostomin species and the implication for molecular identification","volume":"139","author":"Cwiklinski","year":"2012","journal-title":"Parasitology"},{"key":"10.1016\/j.ijpara.2017.11.003_b0100","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1186\/1471-2164-10-492","article-title":"Expulsion of Trichuris muris is associated with increased expression of angiogenin 4 in the gut and increased acidity of mucins within the goblet cell","volume":"10","author":"D'Elia","year":"2009","journal-title":"BMC Genomics"},{"key":"10.1016\/j.ijpara.2017.11.003_b0105","doi-asserted-by":"crossref","first-page":"989","DOI":"10.1017\/S0007114511003825","article-title":"Alterations in microbiota and fermentation products in equine large intestine in response to dietary variation and intestinal disease","volume":"107","author":"Daly","year":"2012","journal-title":"Br. J. Nutr."},{"key":"10.1016\/j.ijpara.2017.11.003_b0110","doi-asserted-by":"crossref","first-page":"e87424","DOI":"10.1371\/journal.pone.0087424","article-title":"Characterisation of the faecal bacterial community in adult and elderly horses fed a high fibre, high oil or high starch diet using 454 pyrosequencing","volume":"9","author":"Dougal","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0115","doi-asserted-by":"crossref","first-page":"625","DOI":"10.1186\/s13071-016-1908-4","article-title":"Helminth infections and gut microbiota - a feline perspective","volume":"9","author":"Duarte","year":"2016","journal-title":"Parasit. Vectors"},{"key":"10.1016\/j.ijpara.2017.11.003_b0120","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1016\/j.vetpar.2015.08.029","article-title":"Evaluation of newly isolated probiotics in the protection against experimental intestinal trichinellosis","volume":"214","author":"El Temsahy","year":"2015","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0125","doi-asserted-by":"crossref","first-page":"e112846","DOI":"10.1371\/journal.pone.0112846","article-title":"Faecal microbiota of forage-fed horses in New Zealand and the population dynamics of microbial communities following dietary change","volume":"9","author":"Fernandes","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0130","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/s40168-015-0103-8","article-title":"Type 2 immunity-dependent reduction of segmented filamentous bacteria in mice infected with the helminthic parasite Nippostrongylus brasiliensis","volume":"3","author":"Fricke","year":"2015","journal-title":"Microbiome"},{"key":"10.1016\/j.ijpara.2017.11.003_b0135","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.mib.2016.04.004","article-title":"Macrobiota \u2013 helminths as active participants and partners of the microbiota in host intestinal homeostasis","volume":"32","author":"Gause","year":"2016","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0140","doi-asserted-by":"crossref","first-page":"13797","DOI":"10.1038\/srep13797","article-title":"Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects","volume":"5","author":"Giacomin","year":"2015","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ijpara.2017.11.003_b0145","doi-asserted-by":"crossref","first-page":"36797","DOI":"10.1038\/srep36797","article-title":"Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease","volume":"6","author":"Giacomin","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ijpara.2017.11.003_b0150","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1017\/S0031182014000699","article-title":"The microbiota and helminths: sharing the same niche in the human host","volume":"141","author":"Glendinning","year":"2014","journal-title":"Parasitology"},{"key":"10.1016\/j.ijpara.2017.11.003_b0155","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1111\/j.1365-2311.2006.00859.x","article-title":"Long-term effects of ungulates on phytophagous insects","volume":"32","author":"G\u00f3mez","year":"2007","journal-title":"Ecol. Entemol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0160","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1073\/pnas.1419038112","article-title":"Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle","volume":"112","author":"He","year":"2015","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.ijpara.2017.11.003_b0165","doi-asserted-by":"crossref","first-page":"1083","DOI":"10.1007\/s00436-011-2362-z","article-title":"Prevalence of helminths in horses in the state of Brandenburg Germany","volume":"108","author":"Hinney","year":"2011","journal-title":"Parasitol. Res."},{"key":"10.1016\/j.ijpara.2017.11.003_b0170","doi-asserted-by":"crossref","first-page":"e0125495","DOI":"10.1371\/journal.pone.0125495","article-title":"Chronic Trichuris muris infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli","volume":"10","author":"Holm","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0175","doi-asserted-by":"crossref","first-page":"e0125945","DOI":"10.1371\/journal.pone.0125945","article-title":"Chronic Trichuris muris infection in C57BL\/6 mice causes significant changes in host microbiota and metabolome: Effects reversed by pathogen clearance","volume":"10","author":"Houlden","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0180","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1007\/s004420000367","article-title":"The herbivores' dilemma: trade-offs between nutrition and parasitism in foraging decisions","volume":"124","author":"Hutchings","year":"2000","journal-title":"Oecologia"},{"key":"10.1016\/j.ijpara.2017.11.003_b0185","doi-asserted-by":"crossref","first-page":"851","DOI":"10.1017\/S175173111000251X","article-title":"The effect of a diet with fructan-rich chicory roots on intestinal helminths and microbiota with special focus on Bifidobacteria and Campylobacter in piglets around weaning","volume":"5","author":"Jensen","year":"2011","journal-title":"Animal"},{"key":"10.1016\/j.ijpara.2017.11.003_b0190","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.1093\/nar\/gks808","article-title":"Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies","volume":"41","author":"Klindworth","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.ijpara.2017.11.003_b0195","doi-asserted-by":"crossref","DOI":"10.1098\/rstb.2014.0295","article-title":"Interactions between multiple helminths and the gut microbiota in wild rodents","volume":"370","author":"Kreisinger","year":"2015","journal-title":"Philos. Trans. R. Soc. Lond. B. Biol. Sci."},{"key":"10.1016\/j.ijpara.2017.11.003_b0200","doi-asserted-by":"crossref","first-page":"1569","DOI":"10.1099\/jmm.0.47719-0","article-title":"Intestinal TM7 bacterial phylogenies in active inflammatory bowel disease","volume":"57","author":"Kuehbacher","year":"2008","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0205","doi-asserted-by":"crossref","first-page":"e2880","DOI":"10.1371\/journal.pntd.0002880","article-title":"Helminth colonization is associated with increased diversity of the gut microbiota","volume":"8","author":"Lee","year":"2014","journal-title":"PLoS Negl. Trop. Dis."},{"key":"10.1016\/j.ijpara.2017.11.003_b0210","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1016\/j.ijpara.2012.10.015","article-title":"A role for IL-22 in the relationship between intestinal helminths, gut microbiota and mucosal immunity","volume":"43","author":"Leung","year":"2013","journal-title":"Int. J. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0215","doi-asserted-by":"crossref","first-page":"20606","DOI":"10.1038\/srep20606","article-title":"The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome","volume":"6","author":"Li","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.ijpara.2017.11.003_b0220","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1016\/j.vetpar.2015.05.010","article-title":"Splice variants and regulatory networks associated with host resistance to the intestinal worm Cooperia oncophora in cattle","volume":"211","author":"Li","year":"2015","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0225","doi-asserted-by":"crossref","first-page":"e24417","DOI":"10.1371\/journal.pone.0024417","article-title":"Metagenome plasticity of the bovine abomasal microbiota in immune animals in response to Ostertagia ostertagi infection","volume":"6","author":"Li","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0230","doi-asserted-by":"crossref","first-page":"2150","DOI":"10.1128\/IAI.00141-12","article-title":"Alterations in the porcine colon microbiota induced by the gastrointestinal nematode Trichuris suis","volume":"80","author":"Li","year":"2012","journal-title":"Infect. Immun."},{"key":"10.1016\/j.ijpara.2017.11.003_b0235","doi-asserted-by":"crossref","first-page":"483574","DOI":"10.1155\/2014\/483574","article-title":"Comparative analysis of the methanogen diversity in horse and pony by using mcrA gene and archaeal 16S rRNA gene clone libraries","volume":"2014","author":"Lwin","year":"2014","journal-title":"Archaea"},{"key":"10.1016\/j.ijpara.2017.11.003_b0240","doi-asserted-by":"crossref","first-page":"501","DOI":"10.1016\/S0749-0739(17)30092-5","article-title":"Larval cyathostomiasis","volume":"16","author":"Lyons","year":"2000","journal-title":"Vet. Clin. North. Am. Equine Pract."},{"key":"10.1016\/j.ijpara.2017.11.003_b0245","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1016\/S0304-4017(99)00092-8","article-title":"Pathogenicity of cyathostome infection","volume":"85","author":"Love","year":"1999","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0250","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1136\/gut.2005.073817","article-title":"Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach","volume":"55","author":"Manichanh","year":"2006","journal-title":"Gut"},{"key":"10.1016\/j.ijpara.2017.11.003_b0255","doi-asserted-by":"crossref","first-page":"1609","DOI":"10.1007\/s00436-011-2432-2","article-title":"The intraperitoneal inoculation of Lactobacillus casei in mice induces total protection against Trichinella spiralis infection at low challenge doses","volume":"109","author":"Martinez-Gomez","year":"2011","journal-title":"Parasitol. Res."},{"key":"10.1016\/j.ijpara.2017.11.003_b0260","doi-asserted-by":"crossref","first-page":"171","DOI":"10.1016\/j.vetpar.2009.02.010","article-title":"Effect of Lactobacillus casei Shirota strain intraperitoneal administration in CD1 mice on the establishment of Trichinella spiralis adult worms and on IgA anti-T. spiralis production","volume":"162","author":"Martinez-Gomez","year":"2009","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0265","doi-asserted-by":"crossref","first-page":"1221","DOI":"10.1099\/ijs.0.65404-0","article-title":"Adlercreutzia equolifaciens gen. nov., sp. nov., an equol-producing bacterium isolated from human faeces, and emended description of the genus Eggerthella","volume":"58","author":"Maruo","year":"2008","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0270","doi-asserted-by":"crossref","first-page":"126","DOI":"10.1111\/j.2042-3306.2010.00356.x","article-title":"Facing the threat of equine parasitic disease","volume":"43","author":"Matthews","year":"2011","journal-title":"Equine Vet. J."},{"key":"10.1016\/j.ijpara.2017.11.003_b0275","doi-asserted-by":"crossref","first-page":"231","DOI":"10.4141\/cjas96-035","article-title":"Dietary, environmental and microbiological aspects of methane production in ruminants","volume":"76","author":"McAllister","year":"1996","journal-title":"Can. J. Anim. Sci."},{"key":"10.1016\/j.ijpara.2017.11.003_b0280","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1080\/19490976.2015.1047128","article-title":"Alteration of the rat cecal microbiome during colonization with the helminth Hymenolepis diminuta","volume":"6","author":"McKenney","year":"2015","journal-title":"Gut Microbes"},{"key":"10.1016\/j.ijpara.2017.11.003_b0285","doi-asserted-by":"crossref","first-page":"487","DOI":"10.2307\/3282826","article-title":"Prevalence and abundance of equine strongyles (Nematoda: Strongyloidea) in tropical Australia","volume":"76","author":"Mfitilodze","year":"1990","journal-title":"J. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0290","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1111\/1758-2229.12565","article-title":"High-resolution phylogenetic analysis of Endomicrobia reveals multiple acquisitions of endosymbiotic lineages by termite gut flagellates","volume":"9","author":"Mikaelyan","year":"2017","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.ijpara.2017.11.003_b0295","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1016\/j.vetpar.2016.04.021","article-title":"The prevalence, abundance and distribution of cyathostomins (small strongyles) in horses from Western Romania","volume":"223","author":"Morariu","year":"2016","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0300","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/S0304-4017(96)01153-3","article-title":"The pathogenic effects of experimental cyathostome infections in ponies","volume":"70","author":"Murphy","year":"1997","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0305","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1016\/j.vetpar.2010.08.007","article-title":"Analysis of multiyear studies in horses in Kentucky to ascertain whether counts of eggs and larvae per gram of feces are reliable indicators of numbers of strongyles and ascarids present","volume":"174","author":"Nielsen","year":"2010","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0310","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1016\/j.vetpar.2013.11.030","article-title":"Anthelmintic resistance in equine parasites\u2013current evidence and knowledge gaps","volume":"204","author":"Nielsen","year":"2014","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0315","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1111\/lam.12137","article-title":"The core faecal bacterial microbiome of Irish Thoroughbred racehorses","volume":"57","author":"O\u2019Donnell","year":"2013","journal-title":"Lett. Appl. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0320","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1590\/S0036-46652014000200003","article-title":"Effect of Bifidobacterium animalis on mice infected with Strongyloides venezuelensis","volume":"56","author":"Oliveira-Sequeira","year":"2014","journal-title":"Rev. Inst. Med. Trop. Sao Paulo"},{"key":"10.1016\/j.ijpara.2017.11.003_b0325","doi-asserted-by":"crossref","first-page":"619","DOI":"10.1016\/j.pt.2017.04.004","article-title":"This gut ain't big enough for both of us. Or is it? Helminth-microbiota interactions in veterinary species","volume":"33","author":"Peachey","year":"2017","journal-title":"Trends Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0330","first-page":"80","article-title":"Larval cyathostominosis in horses in Ontario: An emerging disease?","volume":"47","author":"Peregrine","year":"2006","journal-title":"Can. Vet. J."},{"key":"10.1016\/j.ijpara.2017.11.003_b0335","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.vetpar.2014.01.004","article-title":"Anthelmintic resistance in important parasites of horses: does it really matter?","volume":"201","author":"Peregrine","year":"2014","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0340","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1017\/S0031182003003251","article-title":"The effect of inulin and sugar beet fibre on Oesophagostomum dentatum infection in pigs","volume":"127","author":"Petkevicius","year":"2003","journal-title":"Parasitology"},{"key":"10.1016\/j.ijpara.2017.11.003_b0345","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1016\/j.vetpar.2004.03.008","article-title":"Effects of short-chain fatty acids and lactic acids on survival of Oesophagostomum dentatum in pigs","volume":"122","author":"Petkevicius","year":"2004","journal-title":"Vet. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0350","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1017\/S0031182006000977","article-title":"The effect of inulin on new and on patent infections of Trichuris suis in growing pigs","volume":"134","author":"Petkevicius","year":"2007","journal-title":"Parasitology"},{"key":"10.1016\/j.ijpara.2017.11.003_b0360","doi-asserted-by":"crossref","first-page":"580","DOI":"10.1111\/evj.12324","article-title":"Characterisation of the faecal metabolome and microbiome of Thoroughbred racehorses","volume":"47","author":"Proudman","year":"2015","journal-title":"Equine Vet. J."},{"key":"10.1016\/j.ijpara.2017.11.003_b0365","doi-asserted-by":"crossref","first-page":"e74026","DOI":"10.1371\/journal.pone.0074026","article-title":"Small intestinal nematode infection of mice is associated with increased enterobacterial loads alongside the intestinal tract","volume":"8","author":"Rausch","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.ijpara.2017.11.003_b0370","doi-asserted-by":"crossref","first-page":"409","DOI":"10.1017\/S0022149X10000751","article-title":"Evaluation of a double centrifugation technique for the detection of Anoplocephala eggs in horse faeces","volume":"85","author":"Rehbein","year":"2011","journal-title":"J. Helminthol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0375","doi-asserted-by":"crossref","first-page":"507","DOI":"10.1016\/j.ijpara.2014.03.006","article-title":"Anthelmintic efficacy on UK Thoroughbred stud farms","volume":"44","author":"Relf","year":"2014","journal-title":"Int. J. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0380","doi-asserted-by":"crossref","first-page":"522","DOI":"10.4161\/gmic.32155","article-title":"Commensal-pathogen interactions in the intestinal tract: lactobacilli promote infection with, and are promoted by, helminth parasites","volume":"5","author":"Reynolds","year":"2014","journal-title":"Gut Microbes"},{"key":"10.1016\/j.ijpara.2017.11.003_b0385","doi-asserted-by":"crossref","first-page":"2984","DOI":"10.4049\/jimmunol.1401056","article-title":"MyD88 signaling inhibits protective immunity to the gastrointestinal helminth parasite Heligmosomoides polygyrus","volume":"193","author":"Reynolds","year":"2014","journal-title":"J. Immunol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0390","doi-asserted-by":"crossref","first-page":"R60","DOI":"10.1186\/gb-2011-12-6-r60","article-title":"Metagenomic biomarker discovery and explanation","volume":"12","author":"Segata","year":"2011","journal-title":"Genome Biol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0395","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1002\/ibd.20101","article-title":"Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease","volume":"13","author":"Sepehri","year":"2007","journal-title":"Inflamm. Bowel Dis."},{"key":"10.1016\/j.ijpara.2017.11.003_b0400","doi-asserted-by":"crossref","first-page":"62","DOI":"10.1111\/j.1574-6968.2011.02434.x","article-title":"Characterization of the faecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons","volume":"326","author":"Shepherd","year":"2012","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.ijpara.2017.11.003_b0405","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1016\/j.tibtech.2015.06.011","article-title":"Proteobacteria: microbial signature of dysbiosis in gut microbiota","volume":"33","author":"Shin","year":"2015","journal-title":"Trends Biotechnol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0410","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1016\/j.ijpara.2015.04.001","article-title":"Differences in the faecal microbiome of non-diarrhoeic clinically healthy dogs and cats associated with Giardia duodenalis infection: impact of hookworms and coccidia","volume":"45","author":"Slapeta","year":"2015","journal-title":"Int. J. Parasitol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0415","doi-asserted-by":"crossref","first-page":"776","DOI":"10.3389\/fmicb.2015.00776","article-title":"Toward the identification of methanogenic archaeal groups as targets of methane mitigation in livestock animals","volume":"6","author":"St-Pierre","year":"2015","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0420","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1186\/1746-6148-8-231","article-title":"Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis","volume":"8","author":"Steelman","year":"2012","journal-title":"BMC Vet. Res."},{"key":"10.1016\/j.ijpara.2017.11.003_b0425","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1111\/j.2042-3306.2011.00397.x","article-title":"An update on cyathostomins: anthelmintic resistance and diagnostic tools","author":"Stratford","year":"2011","journal-title":"Equine Vet. J. Suppl."},{"key":"10.1016\/j.ijpara.2017.11.003_b0430","doi-asserted-by":"crossref","first-page":"857","DOI":"10.1017\/S0031182005008620","article-title":"The influence of dietary carbohydrates on experimental infection with Trichuris suis in pigs","volume":"131","author":"Thomsen","year":"2005","journal-title":"Parasitology"},{"key":"10.1016\/j.ijpara.2017.11.003_b0435","doi-asserted-by":"crossref","first-page":"2937","DOI":"10.1128\/JCM.00714-07","article-title":"New method for simultaneous species-specific identification of equine strongyles (Nematoda, Strongylida) by reverse line blot hybridization","volume":"45","author":"Traversa","year":"2007","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0440","doi-asserted-by":"crossref","first-page":"853","DOI":"10.1007\/s00442-010-1812-0","article-title":"A consistent terminology for quantifying species diversity? Yes, it does exist","volume":"164","author":"Tuomisto","year":"2010","journal-title":"Oecologia"},{"key":"10.1016\/j.ijpara.2017.11.003_b0445","first-page":"863","article-title":"Equine Small Strongyles - Epidemiology, Pathology, and Control","volume":"13","author":"Uhlinger","year":"1991","journal-title":"Comp. Cont. Educ. Pract."},{"key":"10.1016\/j.ijpara.2017.11.003_b0450","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1111\/brv.12113","article-title":"Effects of large herbivores on grassland arthropod diversity","volume":"90","author":"van Klink","year":"2015","journal-title":"Biol. Rev. Camb. Philos. Soc."},{"key":"10.1016\/j.ijpara.2017.11.003_b0455","doi-asserted-by":"crossref","first-page":"1841","DOI":"10.1002\/ibd.21299","article-title":"Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus","volume":"16","author":"Walk","year":"2010","journal-title":"Inflamm. Bowel Dis."},{"key":"10.1016\/j.ijpara.2017.11.003_b0460","doi-asserted-by":"crossref","first-page":"641","DOI":"10.1111\/evj.12361","article-title":"Changes in the faecal microbiota of mares precede the development of post partum colic","volume":"47","author":"Weese","year":"2014","journal-title":"Equine Vet. J."},{"key":"10.1016\/j.ijpara.2017.11.003_b0465","doi-asserted-by":"crossref","first-page":"305","DOI":"10.1016\/S0723-2020(11)80303-6","article-title":"A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics","volume":"14","author":"Winker","year":"1991","journal-title":"Syst. Appl. Microbiol."},{"key":"10.1016\/j.ijpara.2017.11.003_b0470","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1038\/289095a0","article-title":"Are archaebacteria merely derived 'prokaryotes'?","volume":"289","author":"Woese","year":"1981","journal-title":"Nature"},{"key":"10.1016\/j.ijpara.2017.11.003_b0475","doi-asserted-by":"crossref","first-page":"e35470","DOI":"10.1371\/journal.pone.0035470","article-title":"Worm burden-dependent disruption of the porcine colon microbiota by Trichuris suis infection","volume":"7","author":"Wu","year":"2012","journal-title":"PLoS One"}],"container-title":["International Journal for Parasitology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0020751918300201?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0020751918300201?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T03:06:55Z","timestamp":1719803215000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0020751918300201"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,5]]},"references-count":94,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2018,5]]}},"alternative-id":["S0020751918300201"],"URL":"https:\/\/doi.org\/10.1016\/j.ijpara.2017.11.003","relation":{},"ISSN":["0020-7519"],"issn-type":[{"value":"0020-7519","type":"print"}],"subject":[],"published":{"date-parts":[[2018,5]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"The relationships between faecal egg counts and gut microbial composition in UK Thoroughbreds infected by cyathostomins","name":"articletitle","label":"Article Title"},{"value":"International Journal for Parasitology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.ijpara.2017.11.003","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2018 The Authors. Published by Elsevier Ltd on behalf of Australian Society for Parasitology.","name":"copyright","label":"Copyright"}]}}