{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,10]],"date-time":"2026-09-10T17:42:42Z","timestamp":1789062162638,"version":"build-2803163510"},"reference-count":80,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T00:00:00Z","timestamp":1669852800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T00:00:00Z","timestamp":1669852800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,7,29]],"date-time":"2022-07-29T00:00:00Z","timestamp":1659052800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001501","name":"University Grants Commission","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001501","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001843","name":"Science and Engineering Research Board","doi-asserted-by":"publisher","award":["CRG\/2020\/000762"],"award-info":[{"award-number":["CRG\/2020\/000762"]}],"id":[{"id":"10.13039\/501100001843","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Advanced Research"],"published-print":{"date-parts":[[2022,12]]},"DOI":"10.1016\/j.jare.2022.07.014","type":"journal-article","created":{"date-parts":[[2022,8,3]],"date-time":"2022-08-03T12:07:41Z","timestamp":1659528461000},"page":"17-28","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":5,"special_numbering":"C","title":["Identification of Pseudo-R genes in Vitis vinifera and characterization of their role as immunomodulators in host-pathogen interactions"],"prefix":"10.1016","volume":"42","author":[{"given":"Naina","family":"Garewal","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shivalika","family":"Pathania","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Garima","family":"Bhatia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kashmir","family":"Singh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"111","key":"10.1016\/j.jare.2022.07.014_b0005","first-page":"11","article-title":"Structural characterization and duplication modes of pseudogenes in plants","volume":"2021","author":"Mascagni","year":"2021","journal-title":"Sci Reports"},{"key":"10.1016\/j.jare.2022.07.014_b0010","doi-asserted-by":"crossref","first-page":"1916","DOI":"10.1016\/j.biochi.2011.07.024","article-title":"Functional evidence of post-transcriptional regulation by pseudogenes","volume":"93","author":"Muro","year":"2011","journal-title":"Biochimie"},{"key":"10.1016\/j.jare.2022.07.014_b0015","first-page":"111","article-title":"Pseudogene-expressed RNAs: emerging roles in gene regulation and disease","volume":"394","author":"Grand\u00e9r","year":"2015","journal-title":"Curr Top Microbiol Immunol"},{"key":"10.1016\/j.jare.2022.07.014_b0020","first-page":"1014","article-title":"Identifying complex lncrna\/pseudogene\u2013mirna\u2013mrna crosstalk in hormone-dependent cancers","volume":"10","author":"Jayarathna","year":"2021","journal-title":"Biology (Basel)"},{"key":"10.1016\/j.jare.2022.07.014_b0025","doi-asserted-by":"crossref","first-page":"1439","DOI":"10.1042\/CS20190156","article-title":"The pseudogene PTENP1 regulates smooth muscle cells as a competing endogenous RNA","volume":"133","author":"Lai","year":"2019","journal-title":"Clin Sci"},{"key":"10.1016\/j.jare.2022.07.014_b0030","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41467-019-11910-6","article-title":"The transcribed pseudogene RPSAP52 enhances the oncofetal HMGA2-IGF2BP2-RAS axis through LIN28B-dependent and independent let-7 inhibition","volume":"10","author":"Oliveira-Mateos","year":"2019","journal-title":"Nat Commun"},{"key":"10.1016\/j.jare.2022.07.014_b0035","doi-asserted-by":"crossref","first-page":"85","DOI":"10.3389\/fcell.2020.00085","article-title":"Pseudogene-Derived lncRNAs and their miRNA sponging mechanism in human cancer","volume":"8","author":"Lou","year":"2020","journal-title":"Front Cell Dev Biol"},{"issue":"1","key":"10.1016\/j.jare.2022.07.014_b0040","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2156-10-89","article-title":"The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines","volume":"10","author":"Coleman","year":"2009","journal-title":"BMC Genet"},{"key":"10.1016\/j.jare.2022.07.014_b0045","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1080\/07388551.2021.1901648","article-title":"Gauging the trends of pseudogenes in plants","volume":"41","author":"Garewal","year":"2021","journal-title":"Crit Rev Biotechnol"},{"key":"10.1016\/j.jare.2022.07.014_b0050","doi-asserted-by":"crossref","first-page":"842","DOI":"10.1126\/science.1088305","article-title":"Empirical analysis of transcriptional activity in the arabidopsis genome","volume":"302","author":"Yamada","year":"2003","journal-title":"Science (80-)"},{"key":"10.1016\/j.jare.2022.07.014_b0055","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2164-10-317","article-title":"Identification and characterization of pseudogenes in the rice gene complement","volume":"10","author":"Thibaud-Nissen","year":"2009","journal-title":"BMC Genomics"},{"key":"10.1016\/j.jare.2022.07.014_b0060","doi-asserted-by":"crossref","DOI":"10.1177\/11779322211040591","article-title":"Expression, interaction, and role of pseudogene Adh6-ps1 in cancer phenotypes","volume":"15","author":"Nwadiugwu","year":"2021","journal-title":"Bioinform Biol Insights"},{"issue":"1","key":"10.1016\/j.jare.2022.07.014_b0065","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1093\/jac\/dku358","article-title":"Alternatively spliced transcripts and novel pseudogenes of the Plasmodium falciparum resistance-associated locus pfcrt detected in East African malaria patients","volume":"70","author":"Gadalla","year":"2015","journal-title":"J Antimicrob Chemother"},{"issue":"4","key":"10.1016\/j.jare.2022.07.014_b0070","doi-asserted-by":"crossref","first-page":"1479","DOI":"10.7150\/thno.40659","article-title":"Re-recognition of pseudogenes: from molecular to clinical applications","volume":"10","author":"Chen","year":"2020","journal-title":"Theranostics"},{"key":"10.1016\/j.jare.2022.07.014_b0075","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1007\/s12223-013-0280-4","article-title":"Plant antimicrobial peptides","volume":"59","author":"Nawrot","year":"2014","journal-title":"Folia Microbiol (Praha)"},{"key":"10.1016\/j.jare.2022.07.014_b0080","doi-asserted-by":"crossref","first-page":"202","DOI":"10.6026\/97320630012202","article-title":"Function annotation of peptides generated from the non-coding regions of D. melanogaster genome","volume":"12","author":"Varughese","year":"2016","journal-title":"Bioinformation"},{"issue":"4","key":"10.1016\/j.jare.2022.07.014_b0085","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1007\/s11693-015-9172-z","article-title":"Predicting stable functional peptides from the intergenic space of E. coli","volume":"9","author":"Thomas","year":"2015","journal-title":"Syst Synth Biol"},{"key":"10.1016\/j.jare.2022.07.014_b0090","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1093\/bioinformatics\/btu615","article-title":"Making novel proteins from pseudogenes","volume":"31","author":"Shidhi","year":"2015","journal-title":"Bioinformatics"},{"issue":"3","key":"10.1016\/j.jare.2022.07.014_b0095","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1105\/tpc.18.00601","article-title":"Evolutionary origins of pseudogenes and their association with regulatory sequences in plants","volume":"31","author":"Xie","year":"2019","journal-title":"Plant Cell"},{"key":"10.1016\/j.jare.2022.07.014_b0100","first-page":"1","article-title":"pblat: a multithread blat algorithm speeding up aligning sequences to genomes","volume":"20","author":"Wang","year":"2019","journal-title":"BMC Bioinf"},{"key":"10.1016\/j.jare.2022.07.014_b0105","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-019-38989-7","article-title":"Long non-coding RNAs coordinate developmental transitions and other key biological processes in grapevine","volume":"9","author":"Bhatia","year":"2019","journal-title":"Sci Rep"},{"key":"10.1016\/j.jare.2022.07.014_b0110","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12870-021-03059-6","article-title":"Investigation of long non-coding RNAs as regulatory players of grapevine response to powdery and downy mildew infection","volume":"21","author":"Bhatia","year":"2021","journal-title":"BMC Plant Biol"},{"key":"10.1016\/j.jare.2022.07.014_b0115","doi-asserted-by":"crossref","first-page":"D1197","DOI":"10.1093\/nar\/gkx1119","article-title":"PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes","volume":"46","author":"Osuna-Cruz","year":"2018","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0120","doi-asserted-by":"crossref","first-page":"e121","DOI":"10.1093\/nar\/gkt263","article-title":"Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions","volume":"41","author":"Mistry","year":"2013","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0125","doi-asserted-by":"crossref","first-page":"3420","DOI":"10.1093\/nar\/gkn176","article-title":"High-throughput functional annotation and data mining with the Blast2GO suite","volume":"36","author":"G\u00f6tz","year":"2008","journal-title":"Nucleic Acids Res"},{"issue":"1","key":"10.1016\/j.jare.2022.07.014_b0130","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/1754-1611-3-2","article-title":"Synthesizing non-natural parts from natural genomic template","volume":"3","author":"Dhar","year":"2009","journal-title":"J Biol Eng"},{"key":"10.1016\/j.jare.2022.07.014_b0135","doi-asserted-by":"crossref","first-page":"D288","DOI":"10.1093\/nar\/gkaa991","article-title":"DBAASP v3: database of antimicrobial\/cytotoxic activity and structure of peptides as a resource for development of new therapeutics","volume":"49","author":"Pirtskhalava","year":"2021","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0140","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-020-59165-2","article-title":"PlantPepDB: a manually curated plant peptide database","volume":"10","author":"Das","year":"2020","journal-title":"Sci Rep"},{"key":"10.1016\/j.jare.2022.07.014_b0145","doi-asserted-by":"crossref","first-page":"323","DOI":"10.3389\/fmicb.2018.00323","article-title":"In silico approach for prediction of antifungal peptides","volume":"9","author":"Agrawal","year":"2018","journal-title":"Front Microbiol"},{"issue":"D1","key":"10.1016\/j.jare.2022.07.014_b0150","doi-asserted-by":"crossref","first-page":"D1087","DOI":"10.1093\/nar\/gkv1278","article-title":"APD3: the antimicrobial peptide database as a tool for research and education","volume":"44","author":"Wang","year":"2016","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0155","doi-asserted-by":"crossref","first-page":"W216","DOI":"10.1093\/nar\/gkab225","article-title":"Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users","volume":"49","author":"Duvaud","year":"2021","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0160","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1093\/bioinformatics\/btu646","article-title":"PFP\/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool","volume":"31","author":"Khan","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jare.2022.07.014_b0165","doi-asserted-by":"crossref","first-page":"W389","DOI":"10.1093\/nar\/gkv332","article-title":"JPred4: a protein secondary structure prediction server","volume":"43","author":"Drozdetskiy","year":"2015","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0170","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/978-1-60327-429-6_1","article-title":"UNAFold: software for nucleic acid folding and hybridization","volume":"453","author":"Markham","year":"2008","journal-title":"Methods Mol Biol"},{"key":"10.1016\/j.jare.2022.07.014_b0175","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1038\/nprot.2010.5","article-title":"I-TASSER: A unified platform for automated protein structure and function prediction","volume":"5","author":"Roy","year":"2010","journal-title":"Nat Protoc"},{"key":"10.1016\/j.jare.2022.07.014_b0180","doi-asserted-by":"crossref","first-page":"1505","DOI":"10.13005\/bpj\/2024","article-title":"Construction of 3D model of protein drug targets for Erysiphe necator a fungal plant pathogen causing powdery mildew","volume":"13","author":"Padmashree","year":"2020","journal-title":"Biomed Pharmacol J"},{"key":"10.1016\/j.jare.2022.07.014_b0185","doi-asserted-by":"crossref","first-page":"D306","DOI":"10.1093\/nar\/gkj105","article-title":"The PMDB protein model database","volume":"34","author":"Castrignan\u00f2","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0190","first-page":"185","article-title":"Efficient unbound docking of rigid molecules","volume":"2452","author":"Duhovny","year":"2002","journal-title":"Lect Notes Comput Sci (Including Subser Lect Notes Artif Intell Lect Notes Bioinformatics)"},{"issue":"2","key":"10.1016\/j.jare.2022.07.014_b0195","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1038\/nprot.2016.169","article-title":"The ClusPro web server for protein-protein docking","volume":"12","author":"Kozakov","year":"2017","journal-title":"Nat Protoc"},{"key":"10.1016\/j.jare.2022.07.014_b0200","first-page":"82","article-title":"The PyMOL molecular graphics system","volume":"40","author":"DeLano","year":"2002","journal-title":"CCP4 Newsl Protein Crystallogr"},{"key":"10.1016\/j.jare.2022.07.014_b0205","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.07454","article-title":"Contacts-based prediction of binding affinity in protein\u2013protein complexes","volume":"4","author":"Vangone","year":"2015","journal-title":"Elife"},{"key":"10.1016\/j.jare.2022.07.014_b0210","doi-asserted-by":"crossref","first-page":"D115","DOI":"10.1093\/nar\/gkh131","article-title":"UniProt: the Universal Protein knowledgebase","volume":"32","author":"Apweiler","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0215","doi-asserted-by":"crossref","first-page":"W12","DOI":"10.1093\/nar\/gkx428","article-title":"CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features","volume":"45","author":"Kang","year":"2017","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0220","doi-asserted-by":"crossref","first-page":"W155","DOI":"10.1093\/nar\/gkr319","article-title":"psRNATarget: a plant small RNA target analysis server","volume":"39","author":"Dai","year":"2011","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0225","doi-asserted-by":"crossref","first-page":"W49","DOI":"10.1093\/nar\/gky316","article-title":"psRNATarget: a plant small RNA target analysis server (2017 release)","volume":"46","author":"Dai","year":"2018","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0230","doi-asserted-by":"crossref","first-page":"D982","DOI":"10.1093\/nar\/gku1162","article-title":"PNRD: a plant non-coding RNA database","volume":"43","author":"Yi","year":"2015","journal-title":"Nucleic Acids Res"},{"issue":"D1","key":"10.1016\/j.jare.2022.07.014_b0235","doi-asserted-by":"crossref","first-page":"D1040","DOI":"10.1093\/nar\/gkw982","article-title":"PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants","volume":"45","author":"Jin","year":"2017","journal-title":"Nucleic Acids Res"},{"issue":"Database","key":"10.1016\/j.jare.2022.07.014_b0240","doi-asserted-by":"crossref","first-page":"D19","DOI":"10.1093\/nar\/gkq1019","article-title":"Collaboration on behalf of the INSD. The Sequence Read Archive","volume":"39","author":"Leinonen","year":"2011","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0245","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0147369","article-title":"Transcriptomic analysis of grapevine (cv. Summer Black) Leaf, using the illumina platform","volume":"11","author":"Pervaiz","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.jare.2022.07.014_b0250","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12870-015-0631-1","article-title":"Using the combined analysis of transcripts and metabolites to propose key genes for differential terpene accumulation across two regions","volume":"15","author":"Wen","year":"2015","journal-title":"BMC Plant Biol"},{"key":"10.1016\/j.jare.2022.07.014_b0255","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12870-016-0722-7","article-title":"Shared and divergent pathways for flower abscission are triggered by gibberellic acid and carbon starvation in seedless Vitis vinifera L","volume":"16","author":"Domingos","year":"2016","journal-title":"BMC Plant Biol"},{"key":"10.1016\/j.jare.2022.07.014_b0260","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.plantsci.2017.11.005","article-title":"Ectopic expression of Arabidopsis broad-spectrum resistance gene RPW8.2 improves the resistance to powdery mildew in grapevine (Vitis vinifera)","volume":"267","author":"Hu","year":"2018","journal-title":"Plant Sci"},{"issue":"8","key":"10.1016\/j.jare.2022.07.014_b0265","doi-asserted-by":"crossref","first-page":"1494","DOI":"10.1038\/nprot.2013.084","article-title":"De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis","volume":"8","author":"Haas","year":"2013","journal-title":"Nat Protoc"},{"key":"10.1016\/j.jare.2022.07.014_b0270","first-page":"283","article-title":"Computational analysis of \u201c-omics\u201d data to identify transcription factors regulating secondary metabolism in Rauvolfia serpentina","volume":"341","author":"Pathania","year":"2015","journal-title":"Plant Mol Biol Rep"},{"key":"10.1016\/j.jare.2022.07.014_b0275","doi-asserted-by":"crossref","first-page":"381","DOI":"10.1093\/pcp\/pcm013","article-title":"Approaches for extracting practical information from gene co-expression networks in plant biology","volume":"48","author":"Aoki","year":"2007","journal-title":"Plant Cell Physiol"},{"key":"10.1016\/j.jare.2022.07.014_b0280","first-page":"127","article-title":"Statistics II: central tendency and spread of data","volume":"7","author":"Mccluskey","year":"2007","journal-title":"Contin Educ Anaesth Crit Care Pain"},{"key":"10.1016\/j.jare.2022.07.014_b0285","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the false discovery rate: a practical and powerful approach to multiple testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J R Stat Soc Ser B"},{"issue":"11","key":"10.1016\/j.jare.2022.07.014_b0290","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res"},{"key":"10.1016\/j.jare.2022.07.014_b0295","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1137\/040608635","article-title":"Graph clustering via a discrete uncoupling process","volume":"30","author":"Van Dongen","year":"2008","journal-title":"SIAM J Matrix Anal Appl"},{"issue":"1","key":"10.1016\/j.jare.2022.07.014_b0300","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2105-12-436","article-title":"ClusterMaker: a multi-algorithm clustering plugin for Cytoscape","volume":"12","author":"Morris","year":"2011","journal-title":"BMC Bioinf"},{"key":"10.1016\/j.jare.2022.07.014_b0305","first-page":"110","article-title":"BLAST+: architecture and applications","volume":"101","author":"Camacho","year":"2009","journal-title":"BMC Bioinforma"},{"key":"10.1016\/j.jare.2022.07.014_b0310","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1038\/nprot.2008.211","article-title":"Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources","volume":"4","author":"Huang","year":"2009","journal-title":"Nat Protoc"},{"key":"10.1016\/j.jare.2022.07.014_b0315","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1104\/pp.109.140632","article-title":"Evolutionary and expression signatures of pseudogenes in Arabidopsis and rice","volume":"151","author":"Zou","year":"2009","journal-title":"Plant Physiol"},{"key":"10.1016\/j.jare.2022.07.014_b0320","first-page":"86","article-title":"An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants","author":"Libault","year":"2010","journal-title":"Plant J"},{"key":"10.1016\/j.jare.2022.07.014_b0325","first-page":"799","article-title":"Of the nine cytidine deaminase-like genes in arabidopsis, eight are pseudogenes and only one is required to maintain pyrimidine homeostasis in vivo","volume":"171","author":"Chen","year":"2016","journal-title":"Plant Physiol"},{"key":"10.1016\/j.jare.2022.07.014_b0330","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1146\/annurev.genet.37.040103.103949","article-title":"Pseudogenes: are they \u201cJunk\u201d or functional DNA?","volume":"37","author":"Balakirev","year":"2003","journal-title":"Annu Rev Genet"},{"key":"10.1016\/j.jare.2022.07.014_b0335","doi-asserted-by":"crossref","first-page":"1303","DOI":"10.1534\/genetics.109.102871","article-title":"Identification of a new rice blast resistance gene, Pid3, by genomewide comparison of paired nucleotide-binding site\u2013leucine-rich repeat genes and their pseudogene alleles between the two sequenced rice genomes","volume":"182","author":"Shang","year":"2009","journal-title":"Genetics"},{"key":"10.1016\/j.jare.2022.07.014_b0340","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1111\/mpp.13055","article-title":"Three LysM effectors of Zymoseptoria tritici collectively disarm chitin-triggered plant immunity","volume":"22","author":"Tian","year":"2021","journal-title":"Mol Plant Pathol"},{"key":"10.1016\/j.jare.2022.07.014_b0345","doi-asserted-by":"crossref","first-page":"4709","DOI":"10.3390\/ijms22094709","article-title":"Recent advances in effector-triggered immunity in plants: new pieces in the puzzle create a different paradigm","volume":"22","author":"Nguyen","year":"2021","journal-title":"Int J Mol Sci"},{"key":"10.1016\/j.jare.2022.07.014_b0350","doi-asserted-by":"crossref","first-page":"6997","DOI":"10.1093\/nar\/gkq587","article-title":"Segmental duplications in the human genome reveal details of pseudogene formation","volume":"38","author":"Khurana","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jare.2022.07.014_b0355","doi-asserted-by":"crossref","first-page":"440","DOI":"10.4161\/viru.1.5.12983","article-title":"Antimicrobial peptides: the ancient arm of the human immune system","volume":"1","author":"Wiesner","year":"2010","journal-title":"Virulence"},{"issue":"3","key":"10.1016\/j.jare.2022.07.014_b0360","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1080\/07352689709701952","article-title":"Antimicrobial peptides from plants","volume":"16","author":"Broekaert","year":"1997","journal-title":"CRC Crit Rev Plant Sci"},{"key":"10.1016\/j.jare.2022.07.014_b0365","doi-asserted-by":"crossref","first-page":"464","DOI":"10.1111\/mpp.12299","article-title":"Cooperative interaction of antimicrobial peptides with the interrelated immune pathways in plants","volume":"17","author":"Bolouri Moghaddam","year":"2016","journal-title":"Mol Plant Pathol"},{"key":"10.1016\/j.jare.2022.07.014_b0370","first-page":"4715","article-title":"The pseudogene URAHP promotes proliferation and regulates the pathogenesis of preeclampsia","volume":"12","author":"Li","year":"2020","journal-title":"Am J Transl Res"},{"key":"10.1016\/j.jare.2022.07.014_b0375","article-title":"Identification of a circRNA-miRNA-mRNA regulatory network for exploring novel therapeutic options for glioma","volume":"9","author":"He","year":"2021","journal-title":"Res Sq"},{"key":"10.1016\/j.jare.2022.07.014_b0380","doi-asserted-by":"crossref","first-page":"709","DOI":"10.1089\/dna.2019.5272","article-title":"Application of machine learning in developing a novelty five-pseudogene signature to predict prognosis of head and neck squamous cell carcinoma: a new aspect of \u201cJunk Genes\u201d in biomedical practice","volume":"39","author":"Xing","year":"2020","journal-title":"DNA Cell Biol"},{"key":"10.1016\/j.jare.2022.07.014_b0385","doi-asserted-by":"crossref","unstructured":"Alon U. An introduction to systems biology\u202f: Design principles of biological circuits. 1st ed. New York: Chapman and Hall\/CRC; 2006. https:\/\/doi.org\/10.1201\/9781420011432.","DOI":"10.1201\/9781420011432"},{"key":"10.1016\/j.jare.2022.07.014_b0390","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1142\/S0129183108012510","article-title":"Robustness in scale-free networks: comparing directed and undirected networks","volume":"19","author":"Emmert-Streib","year":"2008","journal-title":"Int J Mod Phys C"},{"key":"10.1016\/j.jare.2022.07.014_b0395","article-title":"Module-based association analysis for omics data with network structure","volume":"10","author":"Wang","year":"2015","journal-title":"PLoS One"},{"issue":"4","key":"10.1016\/j.jare.2022.07.014_b0400","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1111\/tpj.12327","article-title":"Genetic dissection of a TIR-NB-LRR locus from the wild North American grapevine species Muscadinia rotundifolia identifies paralogous genes conferring resistance to major fungal and oomycete pathogens in cultivated grapevine","volume":"76","author":"Feechan","year":"2013","journal-title":"Plant J"}],"container-title":["Journal of Advanced Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2090123222001680?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2090123222001680?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,15]],"date-time":"2026-05-15T08:51:08Z","timestamp":1778835068000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2090123222001680"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,12]]},"references-count":80,"alternative-id":["S2090123222001680"],"URL":"https:\/\/doi.org\/10.1016\/j.jare.2022.07.014","relation":{},"ISSN":["2090-1232"],"issn-type":[{"value":"2090-1232","type":"print"}],"subject":[],"published":{"date-parts":[[2022,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Identification of Pseudo-R genes in Vitis vinifera and characterization of their role as immunomodulators in host-pathogen interactions","name":"articletitle","label":"Article Title"},{"value":"Journal of Advanced Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jare.2022.07.014","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 The Authors. Published by Elsevier B.V. on behalf of Cairo University.\u00a9 2022 Published by Elsevier B.V. on behalf of Cairo University.","name":"copyright","label":"Copyright"}]}}