{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,18]],"date-time":"2026-08-18T01:51:38Z","timestamp":1787017898532,"version":"build-2736575974"},"reference-count":74,"publisher":"Elsevier BV","issue":"7","license":[{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2023,7,1]],"date-time":"2023-07-01T00:00:00Z","timestamp":1688169600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,5,20]],"date-time":"2023-05-20T00:00:00Z","timestamp":1684540800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R35GM122560-05S1"],"award-info":[{"award-number":["R35GM122560-05S1"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["IOS-2151063"],"award-info":[{"award-number":["IOS-2151063"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["jbc.org","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Biological Chemistry"],"published-print":{"date-parts":[[2023,7]]},"DOI":"10.1016\/j.jbc.2023.104852","type":"journal-article","created":{"date-parts":[[2023,5,22]],"date-time":"2023-05-22T12:15:03Z","timestamp":1684757703000},"page":"104852","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":15,"title":["Mistranslation of the genetic code by a new family of bacterial transfer RNAs"],"prefix":"10.1016","volume":"299","author":[{"given":"Dominik B.","family":"Schuntermann","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2632-6856","authenticated-orcid":false,"given":"Jonathan T.","family":"Fischer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-5739-4983","authenticated-orcid":false,"given":"Jonmatthew","family":"Bile","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7336-7637","authenticated-orcid":false,"given":"Sarah A.","family":"Gaier","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-3243-3383","authenticated-orcid":false,"given":"Brett A.","family":"Shelley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aya","family":"Awawdeh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martina","family":"Jahn","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0170-2090","authenticated-orcid":false,"given":"Kyle S.","family":"Hoffman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Westhof","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dieter","family":"S\u00f6ll","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christopher R.","family":"Clarke","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2301-2800","authenticated-orcid":false,"given":"Oscar","family":"Vargas-Rodriguez","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.jbc.2023.104852_bib1","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1016\/j.tibs.2014.06.002","article-title":"Protein mistranslation: friend or foe?","volume":"39","author":"Ribas de Pouplana","year":"2014","journal-title":"Trends Biochem. Sci."},{"key":"10.1016\/j.jbc.2023.104852_bib2","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1016\/j.tig.2017.12.007","article-title":"mRNA translation gone awry: translation fidelity and neurological disease","volume":"34","author":"Kapur","year":"2018","journal-title":"Trends Genet."},{"key":"10.1016\/j.jbc.2023.104852_bib3","doi-asserted-by":"crossref","first-page":"22167","DOI":"10.1073\/pnas.2013543117","article-title":"Metabolic stress promotes stop-codon readthrough and phenotypic heterogeneity","volume":"117","author":"Zhang","year":"2020","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib4","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.02501","article-title":"Oxidation of cellular amino acid pools leads to cytotoxic mistranslation of the genetic code","volume":"3","author":"Bullwinkle","year":"2014","journal-title":"Elife"},{"key":"10.1016\/j.jbc.2023.104852_bib5","doi-asserted-by":"crossref","first-page":"17780","DOI":"10.1074\/jbc.M114.564609","article-title":"Reduced amino acid specificity of mammalian tyrosyl-tRNA synthetase is associated with elevated mistranslation of Tyr codons","volume":"289","author":"Raina","year":"2014","journal-title":"J.\u00a0Biol. Chem."},{"key":"10.1016\/j.jbc.2023.104852_bib6","doi-asserted-by":"crossref","first-page":"4028","DOI":"10.1073\/pnas.1000315107","article-title":"Severe oxidative stress induces protein mistranslation through impairment of an aminoacyl-tRNA synthetase editing site","volume":"107","author":"Ling","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib7","doi-asserted-by":"crossref","DOI":"10.1016\/j.celrep.2022.111433","article-title":"Error-prone protein synthesis recapitulates early symptoms of Alzheimer disease in aging mice","volume":"40","author":"Brilkova","year":"2022","journal-title":"Cell Rep."},{"key":"10.1016\/j.jbc.2023.104852_bib8","doi-asserted-by":"crossref","DOI":"10.1126\/sciadv.abl9051","article-title":"Premature aging in mice with error-prone protein synthesis","volume":"8","author":"Shcherbakov","year":"2022","journal-title":"Sci. Adv."},{"key":"10.1016\/j.jbc.2023.104852_bib9","doi-asserted-by":"crossref","first-page":"5294","DOI":"10.1074\/jbc.REV118.002982","article-title":"Pathways to disease from natural variations in human cytoplasmic tRNAs","volume":"294","author":"Lant","year":"2019","journal-title":"J.\u00a0Biol. Chem."},{"key":"10.1016\/j.jbc.2023.104852_bib10","doi-asserted-by":"crossref","first-page":"1697","DOI":"10.1073\/pnas.0409064102","article-title":"Inhibited cell growth and protein functional changes from an editing-defective tRNA synthetase","volume":"102","author":"Bacher","year":"2005","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib11","doi-asserted-by":"crossref","first-page":"1091","DOI":"10.1016\/j.chembiol.2006.08.011","article-title":"Global effects of mistranslation from an editing defect in mammalian cells","volume":"13","author":"Nangle","year":"2006","journal-title":"Chem. Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib12","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1038\/nature05096","article-title":"Editing-defective tRNA synthetase causes protein misfolding and neurodegeneration","volume":"443","author":"Lee","year":"2006","journal-title":"Nature"},{"key":"10.1016\/j.jbc.2023.104852_bib13","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1038\/s41586-022-04499-2","article-title":"Tryptophan depletion results in tryptophan-to-phenylalanine substitutants","volume":"603","author":"Pataskar","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.jbc.2023.104852_bib14","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1038\/nature08576","article-title":"Innate immune and chemically triggered oxidative stress modifies translational fidelity","volume":"462","author":"Netzer","year":"2009","journal-title":"Nature"},{"key":"10.1016\/j.jbc.2023.104852_bib15","doi-asserted-by":"crossref","first-page":"1740","DOI":"10.1093\/nar\/gku1404","article-title":"Protein mistranslation protects bacteria against oxidative stress","volume":"43","author":"Fan","year":"2015","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib16","doi-asserted-by":"crossref","first-page":"993","DOI":"10.1016\/S0300-9084(97)86722-3","article-title":"Codon reassignment in Candida species: an evolutionary conundrum","volume":"78","author":"Tuite","year":"1996","journal-title":"Biochimie"},{"key":"10.1016\/j.jbc.2023.104852_bib17","doi-asserted-by":"crossref","first-page":"e996","DOI":"10.1371\/journal.pone.0000996","article-title":"A\u00a0genetic code alteration is a phenotype diversity generator in the human pathogen Candida albicans","volume":"2","author":"Miranda","year":"2007","journal-title":"PLoS One"},{"key":"10.1016\/j.jbc.2023.104852_bib18","doi-asserted-by":"crossref","first-page":"1122","DOI":"10.1093\/emboj\/16.5.1122","article-title":"The \u2018polysemous\u2019 codon - a codon with multiple amino acid assignment caused by dual specificity of tRNA identity","volume":"16","author":"Suzuki","year":"1997","journal-title":"EMBO J."},{"key":"10.1016\/j.jbc.2023.104852_bib19","doi-asserted-by":"crossref","first-page":"14091","DOI":"10.1073\/pnas.1102835108","article-title":"Unveiling the structural basis for translational ambiguity tolerance in a human fungal pathogen","volume":"108","author":"Rocha","year":"2011","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib20","doi-asserted-by":"crossref","first-page":"6933","DOI":"10.1073\/pnas.1019033108","article-title":"Misacylation of specific nonmethionyl tRNAs by a bacterial methionyl-tRNA synthetase","volume":"108","author":"Jones","year":"2011","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib21","doi-asserted-by":"crossref","DOI":"10.1038\/nmicrobiol.2017.117","article-title":"Translational fidelity and mistranslation in the cellular response to stress","volume":"2","author":"Mohler","year":"2017","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib22","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1008654","article-title":"Global mistranslation increases cell survival under stress in Escherichia coli","volume":"16","author":"Samhita","year":"2020","journal-title":"PLoS Genet."},{"key":"10.1016\/j.jbc.2023.104852_bib23","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1146\/annurev-genet-111212-133522","article-title":"Adaptive translation as a mechanism of stress response and adaptation","volume":"47","author":"Pan","year":"2013","journal-title":"Annu. Rev. Genet."},{"key":"10.1016\/j.jbc.2023.104852_bib24","doi-asserted-by":"crossref","first-page":"98","DOI":"10.1038\/nrg3861","article-title":"Emerging roles of tRNA in adaptive translation, signalling dynamics and disease","volume":"16","author":"Kirchner","year":"2015","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.jbc.2023.104852_bib25","doi-asserted-by":"crossref","first-page":"6494","DOI":"10.1128\/JB.00622-07","article-title":"Genetic code ambiguity confers a selective advantage on Acinetobacter baylyi","volume":"189","author":"Bacher","year":"2007","journal-title":"J.\u00a0Bacteriol."},{"key":"10.1016\/j.jbc.2023.104852_bib26","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1038\/nrmicro3568","article-title":"Genetic code flexibility in microorganisms: novel mechanisms and impact on physiology","volume":"13","author":"Ling","year":"2015","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib27","doi-asserted-by":"crossref","first-page":"3070","DOI":"10.1016\/j.bbagen.2017.01.031","article-title":"Mistranslation: from adaptations to applications","volume":"1861","author":"Hoffman","year":"2017","journal-title":"Biochim. Biophys. Acta Gen. Subj."},{"key":"10.1016\/j.jbc.2023.104852_bib28","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1080\/10409238.2016.1274284","article-title":"Function and origin of mistranslation in distinct cellular contexts","volume":"52","author":"Schwartz","year":"2017","journal-title":"Crit. Rev. Biochem. Mol. Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib29","doi-asserted-by":"crossref","first-page":"383","DOI":"10.3390\/pathogens12030383","article-title":"Translational fidelity during bacterial stresses and host interactions","volume":"12","author":"Lyu","year":"2023","journal-title":"Pathogens"},{"key":"10.1016\/j.jbc.2023.104852_bib30","doi-asserted-by":"crossref","first-page":"2932","DOI":"10.1093\/nar\/gky1319","article-title":"Broad range of missense error frequencies in cellular proteins","volume":"47","author":"Garofalo","year":"2019","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib31","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2110797118","article-title":"Bacterial translation machinery for deliberate mistranslation of the genetic code","volume":"118","author":"Vargas-Rodriguez","year":"2021","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib32","doi-asserted-by":"crossref","first-page":"5017","DOI":"10.1093\/nar\/26.22.5017","article-title":"Universal rules and idiosyncratic features in tRNA identity","volume":"26","author":"Gieg\u00e9","year":"1998","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib33","doi-asserted-by":"crossref","first-page":"1893","DOI":"10.1126\/science.286.5446.1893","article-title":"Quality control mechanisms during translation","volume":"286","author":"Ibba","year":"1999","journal-title":"Science"},{"key":"10.1016\/j.jbc.2023.104852_bib34","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1094\/MPMI-03-11-0073","article-title":"Evidence that thaxtomin C is a pathogenicity determinant of Streptomyces ipomoeae, the causative agent of Streptomyces soil rot disease of sweet potato","volume":"25","author":"Guan","year":"2012","journal-title":"Mol. Plant Microbe Interact."},{"key":"10.1016\/j.jbc.2023.104852_bib35","doi-asserted-by":"crossref","first-page":"2771","DOI":"10.1099\/ijs.0.63161-0","article-title":"Streptomyces turgidiscabies and Streptomyces reticuliscabiei: one genomic species, two pathogenic groups","volume":"56","author":"Bouchek-Mechiche","year":"2006","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib36","doi-asserted-by":"crossref","DOI":"10.1099\/ijsem.0.005574","article-title":"Description of Streptomyces griseiscabiei sp. nov. and reassignment of Streptomyces sp. strain NRRL B-16521 to Streptomyces acidiscabies","volume":"72","author":"Nguyen","year":"2022","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib37","doi-asserted-by":"crossref","DOI":"10.1099\/ijsem.0.005225","article-title":"Streptomyces caniscabiei sp. nov., which causes potato common scab and is distributed across the world","volume":"72","author":"Nguyen","year":"2022","journal-title":"Int. J. Syst. Evol. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib38","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1094\/MPMI-06-20-0164-R","article-title":"A novel species-level group of Streptomyces exhibits variation in phytopathogenicity despite conservation of virulence loci","volume":"34","author":"Weisberg","year":"2021","journal-title":"Mol. Plant Microbe Interact."},{"key":"10.1016\/j.jbc.2023.104852_bib39","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1007\/s10482-016-0824-0","article-title":"Phylogenetic relationships in the family Streptomycetaceae using multi-locus sequence analysis","volume":"110","author":"Labeda","year":"2017","journal-title":"Antonie Van Leeuwenhoek"},{"key":"10.1016\/j.jbc.2023.104852_bib40","article-title":"Comparative genomic insights into the taxonomic classification, diversity, and secondary metabolic potentials of Kitasatospora, a genus closely related to Streptomyces","volume":"12","author":"Li","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib41","doi-asserted-by":"crossref","first-page":"1166","DOI":"10.3390\/genes11101166","article-title":"Genome mining of the genus Streptacidiphilus for biosynthetic and biodegradation potential","volume":"11","author":"Malik","year":"2020","journal-title":"Genes (Basel)"},{"key":"10.1016\/j.jbc.2023.104852_bib42","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1007\/BF02932841","article-title":"In\u00a0vitro combinatorial mutagenesis of the 65th and 222nd positions of the green fluorescent protein of Aequarea victoria","volume":"7","author":"Nakano","year":"2002","journal-title":"Biotechnol. Bioproc. Eng."},{"key":"10.1016\/j.jbc.2023.104852_bib43","doi-asserted-by":"crossref","first-page":"3081","DOI":"10.1016\/j.bbagen.2017.01.025","article-title":"MS-READ: quantitative measurement of amino acid incorporation","volume":"1861","author":"Mohler","year":"2017","journal-title":"Biochim. Biophys. Acta Gen. Subj."},{"key":"10.1016\/j.jbc.2023.104852_bib44","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1093\/nar\/22.3.522","article-title":"Distinctive acceptor-end structure and other determinants of Escherichia coli tRNAPro identity","volume":"22","author":"McClain","year":"1994","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib45","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1093\/nar\/23.1.165","article-title":"Molecular recognition of tRNAPro by Escherichia coli proline tRNA synthetase in\u00a0vitro","volume":"23","author":"Liu","year":"1995","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib46","first-page":"10292","article-title":"Global tRNA misacylation induced by anaerobiosis and antibiotic exposure broadly increases stress resistance in Escherichia coli","volume":"44","author":"Schwartz","year":"2016","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib47","doi-asserted-by":"crossref","first-page":"1132","DOI":"10.1073\/pnas.1317580111","article-title":"Mycobacterial mistranslation is necessary and sufficient for rifampicin phenotypic resistance","volume":"111","author":"Javid","year":"2014","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib48","first-page":"2776","article-title":"Transfer RNAs with novel cloverleaf structures","volume":"45","author":"Mukai","year":"2017","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib49","doi-asserted-by":"crossref","first-page":"12948","DOI":"10.1021\/jacs.6b07121","article-title":"Evolutionary gain of alanine mischarging to noncognate tRNAs with a G4:U69 base pair","volume":"138","author":"Sun","year":"2016","journal-title":"J.\u00a0Am. Chem. Soc."},{"key":"10.1016\/j.jbc.2023.104852_bib50","doi-asserted-by":"crossref","first-page":"11883","DOI":"10.1093\/nar\/gkab898","article-title":"Formation and persistence of polyglutamine aggregates in mistranslating cells","volume":"49","author":"Lant","year":"2021","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib51","doi-asserted-by":"crossref","first-page":"1574","DOI":"10.1080\/15476286.2019.1646079","article-title":"Targeted sequencing reveals expanded genetic diversity of human transfer RNAs","volume":"16","author":"Berg","year":"2019","journal-title":"RNA Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib52","doi-asserted-by":"crossref","DOI":"10.1098\/rstb.2022.0029","article-title":"Perseverance of protein homeostasis despite mistranslation of glycine codons with alanine","volume":"378","author":"Hasan","year":"2023","journal-title":"Philos. Trans. R. Soc. Lond. B Biol. Sci."},{"key":"10.1016\/j.jbc.2023.104852_bib53","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1016\/0022-2836(91)90721-H","article-title":"Influence of proline residues on protein conformation","volume":"218","author":"MacArthur","year":"1991","journal-title":"J.\u00a0Mol. Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib54","doi-asserted-by":"crossref","first-page":"D184","DOI":"10.1093\/nar\/gkv1309","article-title":"GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes","volume":"44","author":"Chan","year":"2016","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib55","doi-asserted-by":"crossref","first-page":"16502","DOI":"10.1073\/pnas.0809179105","article-title":"Quality control despite mistranslation caused by an ambiguous genetic code","volume":"105","author":"Ruan","year":"2008","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.jbc.2023.104852_bib56","article-title":"Probing the genetic code and impacts of mistranslation using tRNAAla anticodon variants","author":"Cozma","year":"2022","journal-title":"bioRxiv"},{"key":"10.1016\/j.jbc.2023.104852_bib57","doi-asserted-by":"crossref","DOI":"10.1098\/rsob.190051","article-title":"Translational control of antibiotic resistance","volume":"9","author":"Witzky","year":"2019","journal-title":"Open Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib58","doi-asserted-by":"crossref","first-page":"545","DOI":"10.1111\/mmi.13419","article-title":"Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology","volume":"101","author":"Katz","year":"2016","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.jbc.2023.104852_bib59","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1016\/j.biochi.2008.10.009","article-title":"On the role of an unusual tRNAGly isoacceptor in Staphylococcus aureus","volume":"91","author":"Giannouli","year":"2009","journal-title":"Biochimie"},{"key":"10.1016\/j.jbc.2023.104852_bib60","doi-asserted-by":"crossref","first-page":"684","DOI":"10.1093\/nar\/gkaa1242","article-title":"Partition of tRNAGly isoacceptors between protein and cell-wall peptidoglycan synthesis in Staphylococcus aureus","volume":"49","author":"Rietmeyer","year":"2021","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib61","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J.\u00a0Mol. Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib62","doi-asserted-by":"crossref","first-page":"D678","DOI":"10.1093\/nar\/gkac1003","article-title":"Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR","volume":"51","author":"Olson","year":"2023","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib63","doi-asserted-by":"crossref","first-page":"D535","DOI":"10.1093\/nar\/gkw1017","article-title":"Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center","volume":"45","author":"Wattam","year":"2017","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib64","doi-asserted-by":"crossref","first-page":"9077","DOI":"10.1093\/nar\/gkab688","article-title":"tRNAscan-SE 2.0: improved detection and functional classification of transfer RNA genes","volume":"49","author":"Chan","year":"2021","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib65","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1038\/msb.2011.75","article-title":"Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega","volume":"7","author":"Sievers","year":"2011","journal-title":"Mol. Syst. Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib66","doi-asserted-by":"crossref","first-page":"1237","DOI":"10.1093\/molbev\/msz312","article-title":"Molecular evolutionary genetics analysis (MEGA) for macOS","volume":"37","author":"Stecher","year":"2020","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.jbc.2023.104852_bib67","doi-asserted-by":"crossref","first-page":"W293","DOI":"10.1093\/nar\/gkab301","article-title":"Interactive tree of life (iTOL) v5: an online tool for phylogenetic tree display and annotation","volume":"49","author":"Letunic","year":"2021","journal-title":"Nucl. Acids Res."},{"key":"10.1016\/j.jbc.2023.104852_bib68","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0247348","article-title":"Unexpected distribution of the 4-formylaminooxyvinylglycine (FVG) biosynthetic pathway in Pseudomonas and beyond","volume":"16","author":"Davis","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.jbc.2023.104852_bib69","doi-asserted-by":"crossref","first-page":"e2222","DOI":"10.7717\/peerj.2222","article-title":"Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria","volume":"4","author":"Davis Ii","year":"2016","journal-title":"PeerJ"},{"key":"10.1016\/j.jbc.2023.104852_bib70","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1007\/s10482-015-0637-6","article-title":"Taxonomic evaluation of putative Streptomyces scabiei strains held in the ARS Culture Collection (NRRL) using multi-locus sequence analysis","volume":"109","author":"Labeda","year":"2016","journal-title":"Antonie Van Leeuwenhoek"},{"key":"10.1016\/j.jbc.2023.104852_bib71","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1111\/2041-210X.12628","article-title":"ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data","volume":"8","author":"Yu","year":"2017","journal-title":"Met. Ecol. Evol."},{"key":"10.1016\/j.jbc.2023.104852_bib72","doi-asserted-by":"crossref","first-page":"361","DOI":"10.1016\/j.jmb.2009.10.030","article-title":"An enhanced system for unnatural amino acid mutagenesis in E.\u00a0coli","volume":"395","author":"Young","year":"2010","journal-title":"J.\u00a0Mol. Biol."},{"key":"10.1016\/j.jbc.2023.104852_bib73","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1016\/j.ymeth.2007.08.001","article-title":"[3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation","volume":"44","author":"Ledoux","year":"2008","journal-title":"Methods"},{"key":"10.1016\/j.jbc.2023.104852_bib74","doi-asserted-by":"crossref","first-page":"D543","DOI":"10.1093\/nar\/gkab1038","article-title":"The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences","volume":"50","author":"Perez-Riverol","year":"2022","journal-title":"Nucl. Acids Res."}],"container-title":["Journal of Biological Chemistry"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S002192582301880X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S002192582301880X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,4,28]],"date-time":"2026-04-28T20:53:50Z","timestamp":1777409630000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S002192582301880X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,7]]},"references-count":74,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2023,7]]}},"alternative-id":["S002192582301880X"],"URL":"https:\/\/doi.org\/10.1016\/j.jbc.2023.104852","relation":{},"ISSN":["0021-9258"],"issn-type":[{"value":"0021-9258","type":"print"}],"subject":[],"published":{"date-parts":[[2023,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Mistranslation of the genetic code by a new family of bacterial transfer RNAs","name":"articletitle","label":"Article Title"},{"value":"Journal of Biological Chemistry","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jbc.2023.104852","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2023 The Authors. Published by Elsevier Inc on behalf of American Society for Biochemistry and Molecular Biology.","name":"copyright","label":"Copyright"}],"article-number":"104852"}}