{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,30]],"date-time":"2026-10-30T05:39:18Z","timestamp":1793338758007,"version":"4.5.0"},"reference-count":86,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,10,1]],"date-time":"2024-10-01T00:00:00Z","timestamp":1727740800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001407","name":"Department of Biotechnology, Ministry of Science and Technology, India","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001407","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Environmental Management"],"published-print":{"date-parts":[[2024,10]]},"DOI":"10.1016\/j.jenvman.2024.122342","type":"journal-article","created":{"date-parts":[[2024,9,3]],"date-time":"2024-09-03T15:50:33Z","timestamp":1725378633000},"page":"122342","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":9,"special_numbering":"C","title":["Comparative assessment of microbiome and resistome of influent and effluent of sewage treatment plant and common effluent treatment plant located in Delhi, India using shotgun approach"],"prefix":"10.1016","volume":"369","author":[{"given":"Prerna","family":"Yadav","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shashi Prabha","family":"Kumari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sunila","family":"Hooda","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rakesh Kumar","family":"Gupta","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6009-8105","authenticated-orcid":false,"given":"Prerna","family":"Diwan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.jenvman.2024.122342_bib1","series-title":"Bioinformatics and Biomedical Engineering","first-page":"136","article-title":"Detection of pools of bacteria with public health importance in wastewater effluent from a municipality in South Africa using next generation sequencing and metagenomics analysis","volume":"vol. 11466","author":"Adegoke","year":"2019"},{"key":"10.1016\/j.jenvman.2024.122342_bib2","doi-asserted-by":"crossref","first-page":"1253","DOI":"10.1007\/s00253-016-7959-9","article-title":"Amplicon-based profiling of bacteria in raw and secondary treated wastewater from treatment plants across Australia","volume":"101","author":"Ahmed","year":"2017","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.jenvman.2024.122342_bib3","doi-asserted-by":"crossref","first-page":"527","DOI":"10.3390\/w15030527","article-title":"Profiling of antibiotic residues in surface water of river Yamuna stretch passing through Delhi, India","volume":"15","author":"Akhter","year":"2023","journal-title":"Water"},{"key":"10.1016\/j.jenvman.2024.122342_bib4","doi-asserted-by":"crossref","DOI":"10.1038\/srep32191","article-title":"Gut microbiome and dietary patterns in different Saudi populations and monkeys","volume":"6","author":"Angelakis","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2024.122342_bib5","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.779196","article-title":"Metagenomics insights into the microbial diversity and microbiome network analysis on the heterogeneity of influent to effluent water","volume":"13","author":"Azli","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib6","doi-asserted-by":"crossref","first-page":"5501","DOI":"10.1016\/j.biortech.2010.02.018","article-title":"Phenol degradation by Bacillus cereus: pathway and kinetic modeling","volume":"101","author":"Banerjee","year":"2010","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.jenvman.2024.122342_bib7","doi-asserted-by":"crossref","first-page":"6349","DOI":"10.1038\/s41598-024-56870-0","article-title":"Metagenomic insights into the wastewater resistome before and after purification at large-scale wastewater treatment plants in the Moscow city","volume":"14","author":"Begmatov","year":"2024","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2024.122342_bib8","doi-asserted-by":"crossref","first-page":"3458","DOI":"10.1038\/s41598-022-07132-4","article-title":"The structure of microbial communities of activated sludge of large-scale wastewater treatment plants in the city of Moscow","volume":"12","author":"Begmatov","year":"2022","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2024.122342_bib9","doi-asserted-by":"crossref","first-page":"398","DOI":"10.1007\/s11270-017-3569-0","article-title":"Phenol biodegradation by Pseudomonas putida in an airlift reactor: assessment of kinetic, hydrodynamic, and mass transfer parameters","volume":"228","author":"Bertollo","year":"2017","journal-title":"Water, Air, Soil Pollut."},{"key":"10.1016\/j.jenvman.2024.122342_bib10","doi-asserted-by":"crossref","DOI":"10.1016\/j.envadv.2023.100425","article-title":"Aeromonas hydrophila in surface water and their removal using a POU technology for drinking in rural communities","volume":"13","author":"Botero","year":"2023","journal-title":"Environ. Adv."},{"key":"10.1016\/j.jenvman.2024.122342_bib11","doi-asserted-by":"crossref","first-page":"e6","DOI":"10.5808\/GI.2019.17.1.e6","article-title":"Statistical analysis of metagenomics data","volume":"17","author":"Calle","year":"2019","journal-title":"Genomics Inform"},{"key":"10.1016\/j.jenvman.2024.122342_bib12","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1186\/1471-2105-10-421","article-title":"BLAST+: architecture and applications","volume":"10","author":"Camacho","year":"2009","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.jenvman.2024.122342_bib13","doi-asserted-by":"crossref","first-page":"3895","DOI":"10.1128\/AAC.02412-14","article-title":"In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing","volume":"58","author":"Carattoli","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.jenvman.2024.122342_bib14","series-title":"Microbial Biodegradation and Bioremediation","first-page":"81","article-title":"Metagenomic approaches to study the culture-independent bacterial diversity of a polluted environment\u2014a case study on north-eastern coast of Bay of Bengal, India","author":"Chakraborty","year":"2022"},{"key":"10.1016\/j.jenvman.2024.122342_bib15","doi-asserted-by":"crossref","first-page":"165","DOI":"10.1186\/s12864-023-09245-0","article-title":"Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation","volume":"24","author":"Commichaux","year":"2023","journal-title":"BMC Genom."},{"key":"10.1016\/j.jenvman.2024.122342_bib16","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1007\/s11274-016-2012-9","article-title":"Bacterial communities in full-scale wastewater treatment systems","volume":"32","author":"Cydzik-Kwiatkowska","year":"2016","journal-title":"World J. Microbiol. Biotechnol."},{"key":"10.1016\/j.jenvman.2024.122342_bib17","doi-asserted-by":"crossref","first-page":"1731","DOI":"10.1080\/10643389.2023.2181620","article-title":"Recommendations for the use of metagenomics for routine monitoring of antibiotic resistance in wastewater and impacted aquatic environments","volume":"53","author":"Davis","year":"2023","journal-title":"Crit. Rev. Environ. Sci. Technol."},{"key":"10.1016\/j.jenvman.2024.122342_bib18","doi-asserted-by":"crossref","first-page":"442","DOI":"10.1016\/j.ijheh.2011.08.002","article-title":"Emerging pollutants in wastewater: a review of the literature","volume":"214","author":"Deblonde","year":"2011","journal-title":"Int. J. Hyg Environ. Health"},{"key":"10.1016\/j.jenvman.2024.122342_bib19","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2020.115603","article-title":"Characterization of antibiotic resistance genes and bacterial community in selected municipal and industrial sewage treatment plants beside Poyang Lake","volume":"174","author":"Ding","year":"2020","journal-title":"Water Res."},{"key":"10.1016\/j.jenvman.2024.122342_bib20","doi-asserted-by":"crossref","first-page":"202","DOI":"10.1007\/s00253-006-0632-y","article-title":"Adsorption of bisphenol A by lactic acid bacteria, Lactococcus, strains","volume":"74","author":"Endo","year":"2007","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.jenvman.2024.122342_bib21","doi-asserted-by":"crossref","first-page":"877","DOI":"10.1186\/1471-2164-15-877","article-title":"Adaptation to environmental factors shapes the organization of regulatory regions in microbial communities","volume":"15","author":"Fernandez","year":"2014","journal-title":"BMC Genom."},{"key":"10.1016\/j.jenvman.2024.122342_bib22","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1186\/s40168-019-0648-z","article-title":"Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters","volume":"7","author":"Fresia","year":"2019","journal-title":"Microbiome"},{"key":"10.1016\/j.jenvman.2024.122342_bib23","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1016\/j.mib.2005.04.005","article-title":"Prokaryotic sulfur oxidation","volume":"8","author":"Friedrich","year":"2005","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib24","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2023.122802","article-title":"Metagenomic analysis reveals the distribution, function, and bacterial hosts of degradation genes in activated sludge from industrial wastewater treatment plants","volume":"340","author":"Gao","year":"2024","journal-title":"Environ. Pollut."},{"key":"10.1016\/j.jenvman.2024.122342_bib25","doi-asserted-by":"crossref","first-page":"4663","DOI":"10.1007\/s00253-016-7307-0","article-title":"Correlating microbial community compositions with environmental factors in activated sludge from four full-scale municipal wastewater treatment plants in Shanghai, China","volume":"100","author":"Gao","year":"2016","journal-title":"Appl. Microbiol. Biotechnol."},{"key":"10.1016\/j.jenvman.2024.122342_bib26","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1007\/s00203-019-01793-y","article-title":"Dissecting microbial community structure in sewage treatment plant for pathogens' detection using metagenomic sequencing technology","volume":"202","author":"Giwa","year":"2020","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib27","doi-asserted-by":"crossref","first-page":"1537","DOI":"10.3390\/w14101537","article-title":"Bacterial community composition and function in a tropical municipal wastewater treatment plant","volume":"14","author":"Gu","year":"2022","journal-title":"Water"},{"key":"10.1016\/j.jenvman.2024.122342_bib28","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2022.154488","article-title":"A longitudinal survey of antibiotic-resistant Enterobacterales in the Irish environment, 2019\u20132020","volume":"828","author":"Hooban","year":"2022","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.jenvman.2024.122342_bib29","doi-asserted-by":"crossref","first-page":"e23","DOI":"10.1016\/j.jid.2016.01.005","article-title":"Research techniques made simple: bacterial 16S ribosomal RNA gene sequencing in cutaneous research","volume":"136","author":"Jo","year":"2016","journal-title":"J. Invest. Dermatol."},{"key":"10.1016\/j.jenvman.2024.122342_bib30","doi-asserted-by":"crossref","first-page":"726","DOI":"10.1016\/j.jmb.2015.11.006","article-title":"BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences","volume":"428","author":"Kanehisa","year":"2016","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.jenvman.2024.122342_bib31","article-title":"Antibiotic consumption in India: geographical variations and temporal changes between 2011 and 2019","volume":"4","author":"Koya","year":"2022","journal-title":"JAC-Antimicrobial Resist."},{"key":"10.1016\/j.jenvman.2024.122342_bib32","article-title":"Consumption of systemic antibiotics in India in 2019","volume":"4","author":"Koya","year":"2022","journal-title":"Lancet Reg. Heal. - Southeast Asia"},{"key":"10.1016\/j.jenvman.2024.122342_bib33","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1016\/j.ecoinf.2015.12.001","article-title":"Bioinformatics aided microbial approach for bioremediation of wastewater containing textile dyes","volume":"31","author":"Kumar","year":"2016","journal-title":"Ecol. Inform."},{"key":"10.1016\/j.jenvman.2024.122342_bib34","doi-asserted-by":"crossref","DOI":"10.1016\/j.jece.2017.12.041","article-title":"Sewage mediated transfer of antibiotic resistance to River Yamuna in Delhi, India","volume":"8","author":"Lamba","year":"2020","journal-title":"J. Environ. Chem. Eng."},{"key":"10.1016\/j.jenvman.2024.122342_bib35","doi-asserted-by":"crossref","first-page":"87380","DOI":"10.1039\/C6RA19603A","article-title":"Evolution of bacterial consortia in an integrated tannery wastewater treatment process","volume":"6","author":"Liang","year":"2016","journal-title":"RSC Adv."},{"key":"10.1016\/j.jenvman.2024.122342_bib36","doi-asserted-by":"crossref","first-page":"771","DOI":"10.1016\/j.jhazmat.2010.06.101","article-title":"Biodegradation of naphthalene by strain Bacillus fusiformis (BFN)","volume":"182","author":"Lin","year":"2010","journal-title":"J. Hazard Mater."},{"key":"10.1016\/j.jenvman.2024.122342_bib37","doi-asserted-by":"crossref","first-page":"8174","DOI":"10.1038\/s41598-020-65031-y","article-title":"Metagenomic analysis of an urban resistome before and after wastewater treatment","volume":"10","author":"Lira","year":"2020","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2024.122342_bib38","article-title":"Bacterial pathogens and community composition in advanced sewage treatment systems revealed by metagenomics analysis based on high-throughput sequencing","volume":"10","author":"Lu","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.jenvman.2024.122342_bib39","doi-asserted-by":"crossref","first-page":"154","DOI":"10.1186\/s40168-017-0369-0","article-title":"Catalogue of antibiotic resistome and host-tracking in drinking water deciphered by a large scale survey","volume":"5","author":"Ma","year":"2017","journal-title":"Microbiome"},{"key":"10.1016\/j.jenvman.2024.122342_bib40","doi-asserted-by":"crossref","first-page":"436","DOI":"10.1016\/j.biortech.2014.12.041","article-title":"Bacterial community compositions of coking wastewater treatment plants in steel industry revealed by Illumina high-throughput sequencing","volume":"179","author":"Ma","year":"2015","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.jenvman.2024.122342_bib41","doi-asserted-by":"crossref","first-page":"1168","DOI":"10.4014\/jmb.1712.12054","article-title":"Microbial community of tannery wastewater involved in nitrification revealed by Illumina MiSeq sequencing","volume":"28","author":"Ma","year":"2018","journal-title":"J. Microbiol. Biotechnol."},{"key":"10.1016\/j.jenvman.2024.122342_bib42","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.145399","article-title":"Targeted metagenomics reveals inferior resilience of farm soil resistome compared to soil microbiome after manure application","volume":"770","author":"Macedo","year":"2021","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.jenvman.2024.122342_bib43","doi-asserted-by":"crossref","first-page":"88","DOI":"10.3390\/tropicalmed4020088","article-title":"The one health approach\u2014why is it so important?","volume":"4","author":"Mackenzie","year":"2019","journal-title":"Trop. Med. Infect. Dis."},{"key":"10.1016\/j.jenvman.2024.122342_bib44","doi-asserted-by":"crossref","first-page":"1572","DOI":"10.1007\/s10646-020-02342-w","article-title":"Nanopore-based metagenomics analysis reveals prevalence of mobile antibiotic and heavy metal resistome in wastewater","volume":"30","author":"Martin","year":"2021","journal-title":"Ecotoxicology"},{"key":"10.1016\/j.jenvman.2024.122342_bib45","doi-asserted-by":"crossref","DOI":"10.3389\/fvets.2021.636715","article-title":"Genomic insights of multidrug-resistant Escherichia coli from wastewater sources and their association with clinical pathogens in South Africa","volume":"8","author":"Mbanga","year":"2021","journal-title":"Front. Vet. Sci."},{"key":"10.1016\/j.jenvman.2024.122342_bib46","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1186\/1471-2105-9-386","article-title":"The metagenomics RAST server \u2013 a public resource for the automatic phylogenetic and functional analysis of metagenomes","volume":"9","author":"Meyer","year":"2008","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.jenvman.2024.122342_bib47","doi-asserted-by":"crossref","first-page":"818","DOI":"10.3390\/metabo12090818","article-title":"Degradation of xenobiotic pollutants: an environmentally sustainable approach","volume":"12","author":"Miglani","year":"2022","journal-title":"Metabolites"},{"key":"10.1016\/j.jenvman.2024.122342_bib48","doi-asserted-by":"crossref","DOI":"10.3389\/fbioe.2021.632059","article-title":"Recent advanced technologies for the characterization of xenobiotic-degrading microorganisms and microbial communities","volume":"9","author":"Mishra","year":"2021","journal-title":"Front. Bioeng. Biotechnol."},{"key":"10.1016\/j.jenvman.2024.122342_bib49","doi-asserted-by":"crossref","first-page":"e155","DOI":"10.1093\/nar\/gks678","article-title":"MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads","volume":"40","author":"Namiki","year":"2012","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jenvman.2024.122342_bib50","doi-asserted-by":"crossref","first-page":"1462","DOI":"10.3389\/fmicb.2018.01462","article-title":"Sewage sludge microbial structures and relations to their sources, treatments, and chemical attributes","volume":"9","author":"Nascimento","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib51","doi-asserted-by":"crossref","first-page":"172","DOI":"10.3389\/fmicb.2019.00172","article-title":"Metagenomic and resistome analysis of a full-scale municipal wastewater treatment plant in Singapore containing membrane bioreactors","volume":"10","author":"Ng","year":"2019","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib52","doi-asserted-by":"crossref","first-page":"506","DOI":"10.3390\/microorganisms7110506","article-title":"Profiling bacterial diversity and potential pathogens in wastewater treatment plants using high-throughput sequencing analysis","volume":"7","author":"Osunmakinde","year":"2019","journal-title":"Microorganisms"},{"key":"10.1016\/j.jenvman.2024.122342_bib53","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2021.112448","article-title":"Deciphering the black box of microbial community of common effluent treatment plant through integrated metagenomics: tackling industrial effluent","volume":"289","author":"Pandit","year":"2021","journal-title":"J. Environ. Manage."},{"key":"10.1016\/j.jenvman.2024.122342_bib54","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.00823-19","article-title":"Repeated isolation of extended-spectrum-\u03b2-lactamase-positive Escherichia coli sequence types 648 and 131 from community wastewater indicates that sewage systems are important sources of emerging clones of antibiotic-resistant bacteria","volume":"63","author":"Paulshus","year":"2019","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.jenvman.2024.122342_bib55","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.868890","article-title":"Aeromonas and human health disorders: clinical approaches","volume":"13","author":"Pessoa","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib56","doi-asserted-by":"crossref","first-page":"242","DOI":"10.1007\/s00203-003-0521-z","article-title":"Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing","volume":"179","author":"Qiu","year":"2003","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib57","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1002\/1097-0290(20000820)69:4<385::AID-BIT5>3.0.CO;2-Q","article-title":"Biodegradation kinetics of benzene, toluene, and phenol as single and mixed substrates for Pseudomonas putida F1","volume":"69","author":"Reardon","year":"2000","journal-title":"Biotechnol. Bioeng."},{"key":"10.1016\/j.jenvman.2024.122342_bib58","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2021.117742","article-title":"Diversified metabolism makes novel Thauera strain highly competitive in low carbon wastewater treatment","volume":"206","author":"Ren","year":"2021","journal-title":"Water Res."},{"key":"10.1016\/j.jenvman.2024.122342_bib59","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1007\/s12562-018-1193-6","article-title":"Metagenomic analysis using 16S ribosomal RNA genes of a bacterial community in an urban stream, the Tama River, Tokyo","volume":"84","author":"Reza","year":"2018","journal-title":"Fish. Sci."},{"key":"10.1016\/j.jenvman.2024.122342_bib60","article-title":"Colistin and carbapenems as last-resort antibiotics: challenging environmental impacts and analytical methods","volume":"2","author":"Sharma","year":"2024","journal-title":"Soil Environ. Heal."},{"key":"10.1016\/j.jenvman.2024.122342_bib61","doi-asserted-by":"crossref","first-page":"1794","DOI":"10.1111\/j.1365-294X.2012.05538.x","article-title":"Next-generation sequencing technologies for environmental DNA research","volume":"21","author":"Shokralla","year":"2012","journal-title":"Mol. Ecol."},{"key":"10.1016\/j.jenvman.2024.122342_bib62","doi-asserted-by":"crossref","first-page":"191","DOI":"10.3103\/S1063455X22030080","article-title":"Isolation and identification of benzoate degrading bacteria from food industry effluent","volume":"44","author":"Shweena","year":"2022","journal-title":"J. Water Chem. Technol."},{"key":"10.1016\/j.jenvman.2024.122342_bib63","doi-asserted-by":"crossref","first-page":"3200","DOI":"10.1128\/aem.57.11.3200-3205.1991","article-title":"Biodegradation of 2,4-dinitrotoluene by a Pseudomonas sp","volume":"57","author":"Spanggord","year":"1991","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib64","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1186\/s40168-017-0298-y","article-title":"Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China","volume":"5","author":"Su","year":"2017","journal-title":"Microbiome"},{"key":"10.1016\/j.jenvman.2024.122342_bib65","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1038\/ismej.2012.80","article-title":"Mechanisms determining the fate of dispersed bacterial communities in new environments","volume":"7","author":"Sz\u00e9kely","year":"2013","journal-title":"ISME J."},{"key":"10.1016\/j.jenvman.2024.122342_bib66","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-019-49372-x","article-title":"Metagenomic analysis using next-generation sequencing of pathogens in bronchoalveolar lavage fluid from pediatric patients with respiratory failure","volume":"9","author":"Takeuchi","year":"2019","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2024.122342_bib67","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.04102-22","article-title":"Metagenomic insight into microbiome and antibiotic resistance genes of high clinical concern in urban and rural hospital wastewater of northern India origin: a major reservoir of antimicrobial resistance","volume":"11","author":"Talat","year":"2023","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.jenvman.2024.122342_bib68","doi-asserted-by":"crossref","first-page":"3245","DOI":"10.2147\/IDR.S412678","article-title":"The first report of Escherichia coli and Klebsiella pneumoniae strains that produce both NDM-5 and OXA-181 in Jiangsu Province, China","volume":"16","author":"Tao","year":"2023","journal-title":"Infect. Drug Resist."},{"key":"10.1016\/j.jenvman.2024.122342_bib69","doi-asserted-by":"crossref","first-page":"300","DOI":"10.3390\/pathogens11030300","article-title":"Pathogenesis of the Pseudomonas aeruginosa biofilm: a review","volume":"11","author":"Tuon","year":"2022","journal-title":"Pathogens"},{"key":"10.1016\/j.jenvman.2024.122342_bib70","doi-asserted-by":"crossref","first-page":"2538","DOI":"10.1111\/j.1462-2920.2012.02757.x","article-title":"Acinetobacter , Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure","volume":"14","author":"VandeWalle","year":"2012","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib71","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/j.biortech.2016.10.006","article-title":"Biodegradation of petroleum hydrocarbons by oleophilic strain of Pseudomonas aeruginosa NCIM 5514","volume":"222","author":"Varjani","year":"2016","journal-title":"Bioresour. Technol."},{"key":"10.1016\/j.jenvman.2024.122342_bib72","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.933373","article-title":"Metagenomics: an approach for unraveling the community structure and functional potential of activated sludge of a common effluent treatment plant","volume":"13","author":"Vasudeva","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib73","doi-asserted-by":"crossref","first-page":"2903","DOI":"10.1016\/j.ygeno.2020.04.002","article-title":"NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes","volume":"112","author":"Verma","year":"2020","journal-title":"Genomics"},{"key":"10.1016\/j.jenvman.2024.122342_bib74","doi-asserted-by":"crossref","first-page":"1595","DOI":"10.3390\/microorganisms9081595","article-title":"Habitats are more important than seasons in shaping soil bacterial communities on the Qinghai-Tibetan Plateau","volume":"9","author":"Wang","year":"2021","journal-title":"Microorganisms"},{"key":"10.1016\/j.jenvman.2024.122342_bib75","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1016\/j.watres.2016.09.003","article-title":"Efficacy of wastewater treatment on Arcobacter butzleri density and strain diversity","volume":"105","author":"Webb","year":"2016","journal-title":"Water Res."},{"key":"10.1016\/j.jenvman.2024.122342_bib77","series-title":"Antimicrobial resistance","year":"2023"},{"key":"10.1016\/j.jenvman.2024.122342_bib78","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.163997","article-title":"Dissemination of carbapenemase-producing Enterobacterales through wastewater and gulls at a wastewater treatment plant in Sweden","volume":"886","author":"Woksepp","year":"2023","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.jenvman.2024.122342_bib79","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/s13568-017-0336-y","article-title":"Microbial community compositions in different functional zones of Carrousel oxidation ditch system for domestic wastewater treatment","volume":"7","author":"Xu","year":"2017","journal-title":"Amb. Express"},{"key":"10.1016\/j.jenvman.2024.122342_bib80","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2020.110332","article-title":"Functional metagenomic landscape of polluted river reveals potential genes involved in degradation of xenobiotic pollutants","volume":"192","author":"Yadav","year":"2021","journal-title":"Environ. Res."},{"key":"10.1016\/j.jenvman.2024.122342_bib81","doi-asserted-by":"crossref","first-page":"6","DOI":"10.3390\/d13010006","article-title":"Analysis of microbial communities and pathogen detection in domestic sewage using metagenomic sequencing","volume":"13","author":"Yasir","year":"2020","journal-title":"Diversity"},{"key":"10.1016\/j.jenvman.2024.122342_bib82","doi-asserted-by":"crossref","first-page":"4765","DOI":"10.1038\/s41467-021-25096-3","article-title":"An omics-based framework for assessing the health risk of antimicrobial resistance genes","volume":"12","author":"Zhang","year":"2021","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2024.122342_bib83","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-017-17743-x","article-title":"Structure and function of the microbial consortia of activated sludge in typical municipal wastewater treatment plants in winter","volume":"7","author":"Zhang","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2024.122342_bib84","article-title":"Metagenomic survey reveals more diverse and abundant antibiotic resistance genes in municipal wastewater than hospital wastewater","volume":"12","author":"Zhang","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib85","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.766364","article-title":"Advances in metagenomics and its application in environmental microorganisms","volume":"12","author":"Zhang","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2024.122342_bib86","doi-asserted-by":"crossref","first-page":"1137","DOI":"10.1038\/ismej.2011.188","article-title":"454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants","volume":"6","author":"Zhang","year":"2012","journal-title":"ISME J."},{"key":"10.1016\/j.jenvman.2024.122342_bib87","doi-asserted-by":"crossref","first-page":"e132","DOI":"10.1093\/nar\/gkq275","article-title":"Ab initio gene identification in metagenomic sequences","volume":"38","author":"Zhu","year":"2010","journal-title":"Nucleic Acids Res."}],"container-title":["Journal of Environmental Management"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0301479724023284?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0301479724023284?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,4]],"date-time":"2025-10-04T20:25:11Z","timestamp":1759609511000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0301479724023284"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,10]]},"references-count":86,"alternative-id":["S0301479724023284"],"URL":"https:\/\/doi.org\/10.1016\/j.jenvman.2024.122342","relation":{},"ISSN":["0301-4797"],"issn-type":[{"value":"0301-4797","type":"print"}],"subject":[],"published":{"date-parts":[[2024,10]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Comparative assessment of microbiome and resistome of influent and effluent of sewage treatment plant and common effluent treatment plant located in Delhi, India using shotgun approach","name":"articletitle","label":"Article Title"},{"value":"Journal of Environmental Management","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jenvman.2024.122342","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"122342"}}