{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,3]],"date-time":"2026-10-03T21:53:17Z","timestamp":1791064397730,"version":"4.1.0"},"reference-count":39,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100012669","name":"Natural Science Foundation Project of Chongqing","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012669","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005230","name":"Natural Science Foundation of Chongqing Municipality","doi-asserted-by":"publisher","award":["CSTB2024NSCQ-QCXMX0088"],"award-info":[{"award-number":["CSTB2024NSCQ-QCXMX0088"]}],"id":[{"id":"10.13039\/501100005230","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Environmental Management"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.jenvman.2026.130999","type":"journal-article","created":{"date-parts":[[2026,9,21]],"date-time":"2026-09-21T22:31:23Z","timestamp":1790029883000},"page":"130999","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Threshold effects of organic amendment on acidic red soil remediation: Community assembly and core microbiome-mediated metabolic coupling"],"prefix":"10.1016","volume":"417","author":[{"given":"Peng","family":"Xu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4645-0771","authenticated-orcid":false,"given":"Lei","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yifan","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qinghong","family":"Jiang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuhang","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoqing","family":"Wu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yun","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.jenvman.2026.130999_bib1","doi-asserted-by":"crossref","first-page":"5893","DOI":"10.1093\/jxb\/erab239","article-title":"Hydrogen sulfide signaling in plant adaptations to adverse conditions: molecular mechanisms","volume":"72","author":"Aroca","year":"2021","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.jenvman.2026.130999_bib2","first-page":"355","article-title":"Soil and agricultural chemistry analysis","author":"Bao","year":"2000","journal-title":"Agriculture Publication"},{"key":"10.1016\/j.jenvman.2026.130999_bib3","doi-asserted-by":"crossref","DOI":"10.3389\/fagro.2022.849911","article-title":"Plant growth promoting actinobacteria, the Most promising candidates as bioinoculants?","volume":"4","author":"Boukhatem","year":"2022","journal-title":"Front. Agron."},{"key":"10.1016\/j.jenvman.2026.130999_bib4","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2025.109835","article-title":"High soil salinity reduces straw decomposition but primes soil organic carbon loss","volume":"207","author":"Chen","year":"2025","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.jenvman.2026.130999_bib5","doi-asserted-by":"crossref","first-page":"1438","DOI":"10.1038\/s41467-024-45895-8","article-title":"A genome and gene catalog of the aquatic microbiomes of the Tibetan Plateau","volume":"15","author":"Cheng","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2026.130999_bib6","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1038\/s41396-019-0567-9","article-title":"Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems","volume":"14","author":"Dai","year":"2020","journal-title":"ISME J."},{"key":"10.1016\/j.jenvman.2026.130999_bib7","doi-asserted-by":"crossref","first-page":"3116","DOI":"10.1038\/s41467-025-58080-2","article-title":"Core microbes regulate plant-soil resilience by maintaining network resilience during long-term restoration of alpine grasslands","volume":"16","author":"Du","year":"2025","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2026.130999_bib8","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1146\/annurev.ecolsys.35.021103.105711","article-title":"Regime shifts, resilience, and biodiversity in ecosystem management","volume":"35","author":"Folke","year":"2004","journal-title":"Annu. Rev. Ecol. Evol. Syst."},{"key":"10.1016\/j.jenvman.2026.130999_bib9","doi-asserted-by":"crossref","DOI":"10.1016\/j.geoderma.2025.117558","article-title":"A robust soil quality index for mountain ecosystems driven by XGBoost and network analysis","volume":"463","author":"Gao","year":"2025","journal-title":"Geoderma"},{"key":"10.1016\/j.jenvman.2026.130999_bib10","doi-asserted-by":"crossref","DOI":"10.1016\/j.still.2024.106352","article-title":"Network analysis was effective in establishing the soil quality index and differentiated among changes in land-use type","volume":"246","author":"Gao","year":"2025","journal-title":"Soil Tillage Res."},{"key":"10.1016\/j.jenvman.2026.130999_bib11","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2022.108604","article-title":"From diversity to complexity: microbial networks in soils","volume":"169","author":"Guseva","year":"2022","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.jenvman.2026.130999_bib12","doi-asserted-by":"crossref","DOI":"10.1016\/j.agee.2023.108462","article-title":"Metagenomic strategies uncover the soil bioavailable phosphorus improved by organic fertilization in Mollisols","volume":"349","author":"Hu","year":"2023","journal-title":"Agric. Ecosyst. Environ."},{"key":"10.1016\/j.jenvman.2026.130999_bib13","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.975571","article-title":"Short-term application of chicken manure under different nitrogen rates alters structure and co-occurrence pattern but not diversity of soil microbial community in wheat field","volume":"13","author":"Jin","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.jenvman.2026.130999_bib14","doi-asserted-by":"crossref","first-page":"5920","DOI":"10.1038\/s41467-024-50276-2","article-title":"Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau","volume":"15","author":"Kang","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2026.130999_bib15","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2025.109737","article-title":"Organic cropping systems alter metabolic potential and carbon, nitrogen and phosphorus cycling capacity of soil microbial communities","volume":"203","author":"Krause","year":"2025","journal-title":"Soil Biol. Biochem."},{"key":"10.1016\/j.jenvman.2026.130999_bib16","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1007\/s11104-021-04913-0","article-title":"Short-term lime application impacts microbial community composition and potential function in an acid black soil","volume":"470","author":"Li","year":"2022","journal-title":"Plant Soil"},{"key":"10.1016\/j.jenvman.2026.130999_bib17","doi-asserted-by":"crossref","DOI":"10.1038\/s41467-025-66019-w","article-title":"Global-scale prevalence of low nutrient use efficiency across major crops","volume":"16","author":"Liu","year":"2025","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2026.130999_bib18","doi-asserted-by":"crossref","first-page":"115","DOI":"10.1061\/JRCEA4.0001137","article-title":"Crop salt Tolerance\u2014Current assessment","volume":"103","author":"Maas","year":"1977","journal-title":"J. Irrigat. Drain. Div."},{"key":"10.1016\/j.jenvman.2026.130999_bib19","doi-asserted-by":"crossref","first-page":"5003","DOI":"10.1128\/AEM.00848-15","article-title":"Comparative analysis of denitrifying activities of Hyphomicrobium nitrativorans, Hyphomicrobium denitrificans, and Hyphomicrobium zavarzinii","volume":"81","author":"Martineau","year":"2015","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.jenvman.2026.130999_bib20","doi-asserted-by":"crossref","first-page":"129","DOI":"10.21315\/tlsr2022.33.3.8","article-title":"Effect of Spent mushroom Compost of Pleurotus eous Strain P-31 on Growth Performance and nodulation ff cowpea (vigna u nguiculata Walp.)","volume":"33","author":"Michael","year":"2022","journal-title":"Trop. Life Sci. Res."},{"key":"10.1016\/j.jenvman.2026.130999_bib21","doi-asserted-by":"crossref","first-page":"9495","DOI":"10.1038\/s41467-025-65319-5","article-title":"Denitrification is a community trait with partial pathways dominating across microbial genomes and biomes","volume":"16","author":"Pold","year":"2025","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2026.130999_bib22","doi-asserted-by":"crossref","DOI":"10.1590\/s0102-0536-2023-e2545","article-title":"Composting of fresh vegetable residues and its application in lettuce cultivation","volume":"41","author":"Porto","year":"2023","journal-title":"Hortic. Bras."},{"key":"10.1016\/j.jenvman.2026.130999_bib23","doi-asserted-by":"crossref","first-page":"591","DOI":"10.1038\/35098000","article-title":"Catastrophic shifts in ecosystems","volume":"413","author":"Scheffer","year":"2001","journal-title":"Nature"},{"key":"10.1016\/j.jenvman.2026.130999_bib24","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1038\/s41396-023-01402-3","article-title":"Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass","volume":"17","author":"Sieradzki","year":"2023","journal-title":"ISME J."},{"key":"10.1016\/j.jenvman.2026.130999_bib25","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1146\/annurev-environ-030323-075629","article-title":"Status of the world's soils","volume":"49","author":"Smith","year":"2024","journal-title":"Annu. Rev. Environ. Resour."},{"key":"10.1016\/j.jenvman.2026.130999_bib26","doi-asserted-by":"crossref","DOI":"10.1016\/j.fcr.2025.109841","article-title":"How do integrated agronomic practices enhance sunflower productivity and stability in saline-alkali soils of arid regions? Evidence from China","volume":"326","author":"Sun","year":"2025","journal-title":"Field Crops Res."},{"key":"10.1016\/j.jenvman.2026.130999_bib27","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2025.1621513","article-title":"Extended photoperiod improves growth and nutritional quality of pak choi under constant daily light integral","volume":"16","author":"Susilo","year":"2025","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.jenvman.2026.130999_bib28","doi-asserted-by":"crossref","DOI":"10.1038\/s41467-025-66544-8","article-title":"Functional diversity of soil microbial communities increases with ecosystem development","volume":"16","author":"Sveen","year":"2025","journal-title":"Nat. Commun."},{"key":"10.1016\/j.jenvman.2026.130999_bib29","doi-asserted-by":"crossref","first-page":"3598","DOI":"10.1038\/s41598-024-83616-9","article-title":"Nano urea's environmental edge and economic efficacy in boosting wheat grain yield across diverse Indian agro-climates","volume":"15","author":"Tripathi","year":"2025","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jenvman.2026.130999_bib30","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2022.1009631","article-title":"Manure properties, soil conditions and managerial factors regulate greenhouse vegetable yield with organic fertilizer application across China","volume":"13","author":"Xiang","year":"2022","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.jenvman.2026.130999_bib31","article-title":"Short-term high-temperature pretreatment to reduce gaseous emissions and accelerate humification in food waste digestate composting: performance and mechanisms","volume":"13","author":"Xu","year":"2025","journal-title":"J. Environ. Chem. Eng."},{"key":"10.1016\/j.jenvman.2026.130999_bib32","article-title":"Soil biota abundance supports ecosystem multifunctionality under carbon farming","author":"Xue","year":"2026","journal-title":"Natl. Sci. Rev."},{"key":"10.1016\/j.jenvman.2026.130999_bib33","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/s40168-023-01726-4","article-title":"A tripartite bacterial-fungal-plant symbiosis in the mycorrhiza-shaped microbiome drives plant growth and mycorrhization","volume":"12","author":"Zhang","year":"2024","journal-title":"Microbiome"},{"key":"10.1016\/j.jenvman.2026.130999_bib35","doi-asserted-by":"crossref","first-page":"891","DOI":"10.3390\/horticulturae11080891","article-title":"Influence of agricultural practices on soil physicochemical properties and rhizosphere microbial communities in Apple orchards in Xinjiang, China","volume":"11","author":"Zhang","year":"2025","journal-title":"Horticulturae"},{"key":"10.1016\/j.jenvman.2026.130999_bib36","article-title":"Manure refinement affects Apple rhizosphere bacterial community structure: a Study in sandy soil","volume":"8","author":"Zhang","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.jenvman.2026.130999_bib34","doi-asserted-by":"crossref","DOI":"10.1016\/j.scienta.2023.112749","article-title":"Yield, nutritional and flavor quality of Chinese cabbage under different rates of chicken manure substituted for chemical fertilizer","volume":"326","author":"Zhang","year":"2024","journal-title":"Sci. Hortic."},{"key":"10.1016\/j.jenvman.2026.130999_bib37","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1016\/j.jare.2025.09.019","article-title":"Nutrition cycling microbiomes drive the succession of antibiotic resistome in long-term manured soils","volume":"84","author":"Zheng","year":"2026","journal-title":"J. Adv. Res."},{"key":"10.1016\/j.jenvman.2026.130999_bib38","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1186\/s13059-020-01999-0","article-title":"The preceding root system drives the composition and function of the rhizosphere microbiome","volume":"21","author":"Zhou","year":"2020","journal-title":"Genome Biol."},{"key":"10.1016\/j.jenvman.2026.130999_bib39","doi-asserted-by":"crossref","first-page":"1194","DOI":"10.1038\/s41396-023-01421-0","article-title":"Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes","volume":"17","author":"Zhou","year":"2023","journal-title":"ISME J."}],"container-title":["Journal of Environmental Management"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S030147972602459X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S030147972602459X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,3]],"date-time":"2026-10-03T21:24:46Z","timestamp":1791062686000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S030147972602459X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":39,"alternative-id":["S030147972602459X"],"URL":"https:\/\/doi.org\/10.1016\/j.jenvman.2026.130999","relation":{},"ISSN":["0301-4797"],"issn-type":[{"value":"0301-4797","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Threshold effects of organic amendment on acidic red soil remediation: Community assembly and core microbiome-mediated metabolic coupling","name":"articletitle","label":"Article Title"},{"value":"Journal of Environmental Management","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jenvman.2026.130999","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"130999"}}