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Sci."},{"key":"10.1016\/j.jenvman.2026.131133_bib81","doi-asserted-by":"crossref","first-page":"50","DOI":"10.1038\/embor.2010.186","article-title":"Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response","volume":"12","author":"Jaskiewicz","year":"2011","journal-title":"EMBO Rep."},{"key":"10.1016\/j.jenvman.2026.131133_bib82","doi-asserted-by":"crossref","DOI":"10.1038\/s43705-022-00094-8","article-title":"Exploring rhizo-microbiome transplants as a tool for protective plant-microbiome manipulation","volume":"2","author":"Jiang","year":"2022","journal-title":"ISME Commun."},{"key":"10.1016\/j.jenvman.2026.131133_bib83","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.737616","article-title":"Seed-Transmitted bacteria and fungi dominate juvenile plant microbiomes","volume":"12","author":"Johnston-Monje","year":"2021","journal-title":"Front. 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Dyn."},{"key":"10.1016\/j.jenvman.2026.131133_bib135","article-title":"Transgenerational effects and epigenetic memory in the clonal plant trifolium repens","volume":"871","author":"Rendina Gonz\u00e1lez","year":"2018","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.jenvman.2026.131133_bib136","doi-asserted-by":"crossref","first-page":"4257","DOI":"10.1021\/acs.jcim.5c00165","article-title":"Structural systems biology toolkit (SSBtoolkit): from molecular structure to subcellular signaling pathways","volume":"65","author":"Ribeiro","year":"2025","journal-title":"J. Chem. Inf. Model."},{"key":"10.1016\/j.jenvman.2026.131133_bib137","doi-asserted-by":"crossref","DOI":"10.1021\/acs.jcim.5b00654","article-title":"Better informed distance geometry: using what we know to improve conformation generation","volume":"55","author":"Riniker","year":"2015","journal-title":"J. Chem. Inf. 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