{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,10]],"date-time":"2026-07-10T18:08:19Z","timestamp":1783706899212,"version":"3.55.0"},"reference-count":44,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Environmental Sciences"],"published-print":{"date-parts":[[2022,3]]},"DOI":"10.1016\/j.jes.2021.06.024","type":"journal-article","created":{"date-parts":[[2021,7,17]],"date-time":"2021-07-17T11:44:05Z","timestamp":1626522245000},"page":"394-402","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":15,"special_numbering":"C","title":["Metabolic responses of indigenous bacteria in chicken faeces and maggots to multiple antibiotics via heavy water labeled single-cell Raman spectroscopy"],"prefix":"10.1016","volume":"113","author":[{"given":"Oladipo Oladiti","family":"Olaniyi","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hongzhe","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yongguan","family":"Zhu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Cui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"2","key":"10.1016\/j.jes.2021.06.024_bib0001","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1111\/jwas.12380","article-title":"Effects of Bacillus subtilis strains on growth, immune parameters, and Streptococcus iniae susceptibility in Nile tilapia, Oreochromis niloticus","volume":"48","author":"Addo","year":"2017","journal-title":"J. World Aquacult. Soc."},{"issue":"3","key":"10.1016\/j.jes.2021.06.024_bib0002","first-page":"1","article-title":"Proteus spp. as putative gastrointestinal pathogens","volume":"31","author":"Amy","year":"2018","journal-title":"Clin. Microbiol. Rev."},{"issue":"2","key":"10.1016\/j.jes.2021.06.024_bib0003","first-page":"197","article-title":"Sustainable commercial maggot production (maggotry) for animal and aqua feeds in Rivers State, South Nigeria","volume":"4","author":"Aniebo","year":"2008","journal-title":"Int. J. Biotechnol. Biochem."},{"issue":"2","key":"10.1016\/j.jes.2021.06.024_bib0004","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1073\/pnas.1420406112","article-title":"Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells","volume":"112","author":"Berry","year":"2015","journal-title":"Proc. Natl. Acad. Sci. USA."},{"issue":"1","key":"10.1016\/j.jes.2021.06.024_bib0005","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13071-019-3517-5","article-title":"Surface sterilization methods impact measures of internal microbial diversity in ticks","volume":"12","author":"Binetruy","year":"2019","journal-title":"Parasit Vectors"},{"key":"10.1016\/j.jes.2021.06.024_bib0006","doi-asserted-by":"crossref","first-page":"1260","DOI":"10.3389\/fmicb.2019.01260","article-title":"Diversity, virulence, and clinical significance of extended-spectrum \u03b2-lactamase- and pAmpC-producing Escherichia coli from companion animals","volume":"10","author":"Bortolami","year":"2019","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.jes.2021.06.024_bib0007","doi-asserted-by":"crossref","first-page":"22","DOI":"10.4103\/0377-4929.151161","article-title":"Genomic analysis and clinical importance of Escherichia coli isolate from patients with sepsis","volume":"58","author":"Chakraborty","year":"2015","journal-title":"Indian J. Pathol Microbiol."},{"issue":"3","key":"10.1016\/j.jes.2021.06.024_bib0008","doi-asserted-by":"crossref","first-page":"1086","DOI":"10.2134\/jeq2008.0128","article-title":"Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste","volume":"38","author":"Chee-Sanford","year":"2009","journal-title":"J. Environ. Qual."},{"issue":"8","key":"10.1016\/j.jes.2021.06.024_bib0009","doi-asserted-by":"crossref","first-page":"5082","DOI":"10.1021\/acs.analchem.7b05080","article-title":"Functional single-cell approach to probing nitrogen-fixing bacteria in soil communities by resonance Raman spectroscopy with 15N2 labeling","volume":"90","author":"Cui","year":"2018","journal-title":"Anal. Chem."},{"issue":"11","key":"10.1016\/j.jes.2021.06.024_bib0010","doi-asserted-by":"crossref","first-page":"5793","DOI":"10.1021\/acs.analchem.6b04913","article-title":"Surface-enhanced Raman spectroscopy combined with stable isotope probing to monitor nitrogen assimilation at both bulk and single-cell level","volume":"89","author":"Cui","year":"2017","journal-title":"Anal. Chem."},{"key":"10.1016\/j.jes.2021.06.024_bib0011","unstructured":"CLSI (Clinical and Laboratory Standards Institute), 2015. performance standards for antimicrobial susceptibility testing; twenty-fifth informational supplement."},{"issue":"4","key":"10.1016\/j.jes.2021.06.024_bib0012","doi-asserted-by":"crossref","first-page":"465","DOI":"10.1089\/fpd.2010.0673","article-title":"Escherichia coli O157:H7: animal reservoir and sources of human infection","volume":"8","author":"Ferens","year":"2011","journal-title":"Foodborne Pathog. Dis."},{"issue":"6","key":"10.1016\/j.jes.2021.06.024_bib0013","doi-asserted-by":"crossref","first-page":"1749","DOI":"10.1099\/mic.0.026385-0","article-title":"The ecology, epidemiology and virulence of enterococcus","volume":"155","author":"Fisher","year":"2009","journal-title":"Microbiology"},{"issue":"3","key":"10.1016\/j.jes.2021.06.024_bib0014","doi-asserted-by":"crossref","first-page":"657","DOI":"10.1111\/j.1462-2920.2006.01185.x","article-title":"Manure and sulfadiazine synergistically increased bacterial antibiotic resistance in soil over at least two months","volume":"9","author":"Heuer","year":"2007","journal-title":"Environ. Microbiol."},{"issue":"7","key":"10.1016\/j.jes.2021.06.024_bib0015","doi-asserted-by":"crossref","first-page":"2527","DOI":"10.1128\/AEM.02577-10","article-title":"Accumulation of sulfonamide resistance genes in arable soils due to repeated application of manure containing sulfadiazine","volume":"77","author":"Heuer","year":"2011","journal-title":"Appl. Environ. Microbiol."},{"issue":"4","key":"10.1016\/j.jes.2021.06.024_bib0016","first-page":"57","article-title":"Mass production of maggots for fish feed using naturally occurring adult houseflies (Musca domestica)","volume":"31","author":"Hezron","year":"2019","journal-title":"Livest. Res. Rural. Dev."},{"issue":"1","key":"10.1016\/j.jes.2021.06.024_bib0017","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1111\/1574-6941.12191","article-title":"Structural and functional response of the soil bacterial community to application of manure from difloxacin-treated pigs","volume":"87","author":"Jechalke","year":"2014","journal-title":"FEMS Microbiol. Ecol."},{"issue":"4","key":"10.1016\/j.jes.2021.06.024_bib0018","doi-asserted-by":"crossref","first-page":"411","DOI":"10.4103\/0019-5049.84842","article-title":"Proteus penneri lurking in the intensive care unit: an important often ignored nosocomial pathogen","volume":"55","author":"Kaistha","year":"2011","journal-title":"Indian J. Anaesth."},{"issue":"2","key":"10.1016\/j.jes.2021.06.024_bib0019","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1007\/s00248-006-9059-3","article-title":"Isolation of Pseudomonas aeruginosa from open ocean and comparison with freshwater, clinical, and animal isolates","volume":"53","author":"Khan","year":"2007","journal-title":"Microb. Ecol."},{"key":"10.1016\/j.jes.2021.06.024_bib0020","series-title":"Nucleic Acid Techniques in Bacterial Systematic","first-page":"115","article-title":"16S\/23S rRNA sequencing","author":"Lane","year":"1991"},{"issue":"6","key":"10.1016\/j.jes.2021.06.024_bib0021","doi-asserted-by":"crossref","first-page":"1034","DOI":"10.1038\/s41564-019-0394-9","article-title":"An automated Raman-based platform for the sorting of live cells by functional properties","volume":"4","author":"Lee","year":"2019","journal-title":"Nat. Microbiol."},{"issue":"10","key":"10.1016\/j.jes.2021.06.024_bib0022","doi-asserted-by":"crossref","first-page":"1841","DOI":"10.4315\/0362-028X-73.10.1841","article-title":"Tetracycline resistance associated with commensal bacteria from representative ready-to-consume deli and restaurant foods","volume":"73","author":"Li","year":"2010","journal-title":"J. Food Prot."},{"issue":"18","key":"10.1016\/j.jes.2021.06.024_bib0023","doi-asserted-by":"crossref","first-page":"5701","DOI":"10.1128\/AEM.01682-13","article-title":"Impact of manure fertilization on the abundance of antibiotic resistant bacteria and frequency of detection of antibiotic resistance genes in soil and on vegetables at harvest","volume":"79","author":"Marti","year":"2013","journal-title":"Appl. Environ. Microbiol."},{"issue":"5","key":"10.1016\/j.jes.2021.06.024_bib0024","doi-asserted-by":"crossref","first-page":"286","DOI":"10.1016\/j.amjopharm.2011.07.002","article-title":"Urinary tract infections in the elderly population","volume":"9","author":"Matthews","year":"2011","journal-title":"Am. J. Geriatr. Pharmacother."},{"issue":"12","key":"10.1016\/j.jes.2021.06.024_bib0025","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1016\/j.cell.2012.10.052","article-title":"Xenobiotics shape the physiology and gene expression of the active human gut microbiome","volume":"152","author":"Maurice","year":"2013","journal-title":"Cell"},{"key":"10.1016\/j.jes.2021.06.024_bib0026","series-title":"Conference on International Agricultural Research for Development, Germany","article-title":"Housefly maggot meal (Magmeal): an emerging substitute of fishmeal in Tilapia diets","author":"Ogunji","year":"2006"},{"issue":"3","key":"10.1016\/j.jes.2021.06.024_bib0027","doi-asserted-by":"crossref","first-page":"1455","DOI":"10.1007\/s00253-018-9459-6","article-title":"Heavy water-labeled Raman spectroscopy reveals carboxymethylcellulose-degrading bacteria and degradation activity at the single-cell level","volume":"103","author":"Olaniyi","year":"2018","journal-title":"Appl. Microbiol. Biotechnol."},{"issue":"13","key":"10.1016\/j.jes.2021.06.024_bib0028","doi-asserted-by":"crossref","first-page":"2001","DOI":"10.9734\/BJAST\/2014\/2714","article-title":"Effect of maggot dietary protein level on growth performance, feed utilization, survival rate and body composition of Heterobranchus longifilis larvae reared in aquarium","volume":"4","author":"Ossey","year":"2014","journal-title":"Br. J. Appl. Sci. Technol."},{"issue":"1","key":"10.1016\/j.jes.2021.06.024_bib0029","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1756-0500-3-169","article-title":"Prevalence of asymptomatic bacteriuria in type 2 diabetic subjects with and without microalbuminuria","volume":"3","author":"Papazafiropoulou","year":"2010","journal-title":"BMC Res. Notes"},{"issue":"4","key":"10.1016\/j.jes.2021.06.024_bib0030","doi-asserted-by":"crossref","first-page":"452","DOI":"10.1016\/j.aninu.2018.03.005","article-title":"Impact of on-range choice feeding with black soldier fly larvae (Hermetia illucens) on flock performance, egg quality, and range use of free-range laying hens","volume":"4","author":"Ruhnke","year":"2018","journal-title":"Anim. Nutr."},{"issue":"5","key":"10.1016\/j.jes.2021.06.024_bib0031","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1128\/microbiolspec.UTI-0017-2013","article-title":"Proteus mirabilis and urinary tract infections","volume":"3","author":"Schaffer","year":"2015","journal-title":"Microbiol. Spectr"},{"issue":"17","key":"10.1016\/j.jes.2021.06.024_bib0032","doi-asserted-by":"crossref","first-page":"8782","DOI":"10.1021\/acs.analchem.7b01025","article-title":"Using infrared spectroscopy and multivariate analysis to detect antibiotics\u2019 resistant Escherichia coli bacteria","volume":"89","author":"Sharaha","year":"2017","journal-title":"Anal. Chem."},{"issue":"1","key":"10.1016\/j.jes.2021.06.024_bib0033","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1097\/00013542-200501000-00003","article-title":"Antimicrobial growth promoter use in livestock-implications for human health","volume":"16","author":"Shuford","year":"2005","journal-title":"Rev. Med. Microbiol."},{"issue":"1","key":"10.1016\/j.jes.2021.06.024_bib0034","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1038\/s41598-017-16898-x","article-title":"Raman-deuterium isotope probing for in-situ identification of antimicrobial resistant bacteria in Thames River","volume":"7","author":"Song","year":"2017","journal-title":"Sci. Rep."},{"issue":"7","key":"10.1016\/j.jes.2021.06.024_bib0035","doi-asserted-by":"crossref","first-page":"4108","DOI":"10.1021\/acs.analchem.6b05051","article-title":"Metabolic-activity-based assessment of antimicrobial effects by D2O-Labeled single-cell Raman microspectroscopy","volume":"89","author":"Tao","year":"2017","journal-title":"Anal. Chem."},{"issue":"42","key":"10.1016\/j.jes.2021.06.024_bib0036","doi-asserted-by":"crossref","first-page":"15202","DOI":"10.1073\/pnas.1409836111","article-title":"Bloom of resident antibiotic-resistant bacteria in soil following manure fertilization","volume":"111","author":"Udikovic-Kolic","year":"2014","journal-title":"Proc. Natl. Acad. Sci. USA"},{"issue":"3","key":"10.1016\/j.jes.2021.06.024_bib0037","doi-asserted-by":"crossref","first-page":"803","DOI":"10.3748\/wjg.v21.i3.803","article-title":"Application of metagenomics in the human gut microbiome","volume":"21","author":"Wang","year":"2015","journal-title":"World J. Gastroenterol."},{"issue":"2","key":"10.1016\/j.jes.2021.06.024_bib0038","doi-asserted-by":"crossref","first-page":"572","DOI":"10.1111\/1751-7915.13519","article-title":"Raman-deuterium isotope probing to study metabolic activities of single bacterial cells in human intestinal microbiota","volume":"13","author":"Wang","year":"2019","journal-title":"Microb. Biotechnol."},{"issue":"5","key":"10.1016\/j.jes.2021.06.024_bib0039","doi-asserted-by":"crossref","first-page":"439","DOI":"10.1016\/j.mib.2003.09.009","article-title":"Antibiotics in animal feed and their role in resistance development","volume":"6","author":"Wegener","year":"2003","journal-title":"Curr. Opin. Microbiol"},{"issue":"18","key":"10.1016\/j.jes.2021.06.024_bib0040","doi-asserted-by":"crossref","first-page":"11322","DOI":"10.1021\/acs.est.0c04292","article-title":"Temporal dynamics of antibiotic resistome in the plastisphere during microbial colonization","volume":"54","author":"Yang","year":"2020","journal-title":"Environ. Sci. Technol."},{"issue":"9","key":"10.1016\/j.jes.2021.06.024_bib0041","doi-asserted-by":"crossref","first-page":"6296","DOI":"10.1021\/acs.analchem.9b01064","article-title":"Rapid antibiotic susceptibility testing of pathogenic bacteria using heavy-water-labeled single-cell Raman Spectroscopy in clinical samples","volume":"91","author":"Yang","year":"2019","journal-title":"Anal. Chem"},{"key":"10.1016\/j.jes.2021.06.024_bib0042","doi-asserted-by":"crossref","first-page":"188","DOI":"10.1016\/j.envpol.2017.05.073","article-title":"Molecular characterization of antibiotic resistance in cultivable multidrug-resistant bacteria from livestock manure","volume":"229","author":"Yang","year":"2017","journal-title":"Environ. Pollut."},{"issue":"8","key":"10.1016\/j.jes.2021.06.024_bib0043","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0183267","article-title":"Genetic diversity of the O antigens of Proteus species and the development of a suspension array for molecular serotyping","volume":"12","author":"Yu","year":"2017","journal-title":"PLoS. One"},{"issue":"9","key":"10.1016\/j.jes.2021.06.024_bib0044","doi-asserted-by":"crossref","first-page":"3435","DOI":"10.1073\/pnas.1222743110","article-title":"Diverse and abundant antibiotic resistance genes in Chinese swine farms","volume":"110","author":"Zhu","year":"2013","journal-title":"Proc. Nat. Acad. Sci. USA"}],"container-title":["Journal of Environmental Sciences"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1001074221002527?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1001074221002527?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,19]],"date-time":"2025-10-19T10:27:53Z","timestamp":1760869673000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1001074221002527"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,3]]},"references-count":44,"alternative-id":["S1001074221002527"],"URL":"https:\/\/doi.org\/10.1016\/j.jes.2021.06.024","relation":{},"ISSN":["1001-0742"],"issn-type":[{"value":"1001-0742","type":"print"}],"subject":[],"published":{"date-parts":[[2022,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Metabolic responses of indigenous bacteria in chicken faeces and maggots to multiple antibiotics via heavy water labeled single-cell Raman spectroscopy","name":"articletitle","label":"Article Title"},{"value":"Journal of Environmental Sciences","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jes.2021.06.024","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2021 The Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences. Published by Elsevier B.V.","name":"copyright","label":"Copyright"}]}}