{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T10:06:30Z","timestamp":1761991590705,"version":"build-2065373602"},"reference-count":20,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T00:00:00Z","timestamp":1669852800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,12,1]],"date-time":"2022-12-01T00:00:00Z","timestamp":1669852800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,9,28]],"date-time":"2022-09-28T00:00:00Z","timestamp":1664323200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01AI135118"],"award-info":[{"award-number":["R01AI135118"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000061","name":"Fogarty International Center","doi-asserted-by":"publisher","award":["D43TW010540"],"award-info":[{"award-number":["D43TW010540"]}],"id":[{"id":"10.13039\/100000061","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100006978","name":"University of California Berkeley","doi-asserted-by":"publisher","award":["6252","PRJEB50568"],"award-info":[{"award-number":["6252","PRJEB50568"]}],"id":[{"id":"10.13039\/100006978","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Global Antimicrobial Resistance"],"published-print":{"date-parts":[[2022,12]]},"DOI":"10.1016\/j.jgar.2022.09.009","type":"journal-article","created":{"date-parts":[[2022,10,3]],"date-time":"2022-10-03T03:15:50Z","timestamp":1664766950000},"page":"212-215","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"special_numbering":"C","title":["Evaluation of changes in the faecal resistome associated with children's exposure to domestic animals and food animal production"],"prefix":"10.1016","volume":"31","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0905-9944","authenticated-orcid":false,"given":"Sara G.","family":"Cifuentes","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7062-6293","authenticated-orcid":false,"given":"Jay","family":"Graham","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7629-4864","authenticated-orcid":false,"given":"Fernanda","family":"Loayza","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0224-9734","authenticated-orcid":false,"given":"Carlos","family":"Saraiva","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6319-3012","authenticated-orcid":false,"given":"Liseth","family":"Salinas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2617-9021","authenticated-orcid":false,"given":"Gabriel","family":"Trueba","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9626-4489","authenticated-orcid":false,"given":"Pa\u00fal A.","family":"C\u00e1rdenas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.jgar.2022.09.009_bib0001","doi-asserted-by":"crossref","first-page":"87","DOI":"10.3389\/fmicb.2013.00087","article-title":"The human microbiome as a reservoir of antimicrobial resistance","volume":"4","author":"Penders","year":"2013","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jgar.2022.09.009_bib0002","doi-asserted-by":"crossref","first-page":"e78822","DOI":"10.1371\/journal.pone.0078822","article-title":"Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes","volume":"8","author":"Moore","year":"2013","journal-title":"Plos One"},{"key":"10.1016\/j.jgar.2022.09.009_bib0003","article-title":"Host genetic and environmental factors shape the human gut resistome","author":"Roy","year":"2020","journal-title":"BioRxiv"},{"key":"10.1016\/j.jgar.2022.09.009_bib0004","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1002\/bies.201300143","article-title":"Metagenomic insights into the human gut resistome and the forces that shape it","volume":"36","author":"Forslund","year":"2014","journal-title":"BioEssays"},{"key":"10.1016\/j.jgar.2022.09.009_bib0005","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1038\/nature17672","article-title":"Interconnected microbiomes and resistomes in low-income human habitats","volume":"533","author":"Pehrsson","year":"2016","journal-title":"Nature"},{"key":"10.1016\/j.jgar.2022.09.009_bib0006","doi-asserted-by":"crossref","first-page":"709","DOI":"10.4269\/ajtmh.12-0568","article-title":"Formative Research on Hygiene Behaviors and Geophagy among Infants and Young Children and Implications of Exposure to Fecal Bacteria","volume":"89","author":"Ngure","year":"2013","journal-title":"Am J Tropical Medicine Hyg"},{"key":"10.1016\/j.jgar.2022.09.009_bib0007","doi-asserted-by":"crossref","DOI":"10.1289\/EHP7729","article-title":"Environmental Spread of Extended Spectrum Beta-Lactamase (ESBL) Producing Escherichia coli and ESBL Genes among Children and Domestic Animals in Ecuador","volume":"129","author":"Salinas","year":"2021","journal-title":"Environ Health Persp"},{"key":"10.1016\/j.jgar.2022.09.009_bib0008","unstructured":"Andrews S. FastQC: a quality control tool for high throughput sequence data 2010. https:\/\/www.bioinformatics.babraham.ac.uk\/projects\/fastqc\/ (accessed September 17, 2020)"},{"key":"10.1016\/j.jgar.2022.09.009_bib0009","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jgar.2022.09.009_bib0010","doi-asserted-by":"crossref","first-page":"2640","DOI":"10.1093\/jac\/dks261","article-title":"Identification of acquired antimicrobial resistance genes","volume":"67","author":"Zankari","year":"2012","journal-title":"J Antimicrob Chemoth"},{"key":"10.1016\/j.jgar.2022.09.009_bib0011","doi-asserted-by":"crossref","first-page":"24645","DOI":"10.1038\/srep24645","article-title":"Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems","volume":"6","author":"Noyes","year":"2016","journal-title":"Sci Rep"},{"key":"10.1016\/j.jgar.2022.09.009_bib0012","doi-asserted-by":"crossref","first-page":"lqab018","DOI":"10.1093\/nargab\/lqab018","article-title":"ResistoXplorer: a web-based tool for visual, statistical and exploratory data analysis of resistome data","volume":"3","author":"Dhariwal","year":"2021","journal-title":"NAR Genom Bioinform"},{"key":"10.1016\/j.jgar.2022.09.009_bib0013","doi-asserted-by":"crossref","first-page":"1200","DOI":"10.1038\/nmeth.2658","article-title":"Differential abundance analysis for microbial marker-gene surveys","volume":"10","author":"Paulson","year":"2013","journal-title":"Nat Methods"},{"key":"10.1016\/j.jgar.2022.09.009_bib0014","doi-asserted-by":"crossref","first-page":"139","DOI":"10.1093\/bioinformatics\/btp616","article-title":"edgeR: a Bioconductor package for differential expression analysis of digital gene expression data","volume":"26","author":"Robinson","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jgar.2022.09.009_bib0015","doi-asserted-by":"crossref","first-page":"274","DOI":"10.1186\/s12864-018-4637-6","article-title":"Comparison of normalization methods for the analysis of metagenomic gene abundance data","volume":"19","author":"Pereira","year":"2018","journal-title":"BMC Genomics"},{"key":"10.1016\/j.jgar.2022.09.009_bib0016","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"Journal of the Royal Statistical Society"},{"key":"10.1016\/j.jgar.2022.09.009_bib0017","doi-asserted-by":"crossref","first-page":"975","DOI":"10.1016\/j.chom.2021.03.017","article-title":"The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition","volume":"29","author":"Li","year":"2021","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.jgar.2022.09.009_bib0018","doi-asserted-by":"crossref","first-page":"536","DOI":"10.3389\/fmicb.2015.00536","article-title":"Spread of tetracycline resistance genes at a conventional dairy farm","volume":"6","author":"Kyselkov\u00e1","year":"2015","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jgar.2022.09.009_bib0019","first-page":"394","article-title":"Genomic interplay in bacterial communities: implications for growth promoting practices in animal husbandry","volume":"5","author":"Chowdhury","year":"2014","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jgar.2022.09.009_bib0020","doi-asserted-by":"crossref","first-page":"3290","DOI":"10.1038\/s41598-021-82640-3","article-title":"The distribution of antibiotic resistance genes in chicken gut microbiota commensals","volume":"11","author":"Juricova","year":"2021","journal-title":"Sci Rep"}],"container-title":["Journal of Global Antimicrobial Resistance"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2213716522002235?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2213716522002235?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T10:01:47Z","timestamp":1761991307000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2213716522002235"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,12]]},"references-count":20,"alternative-id":["S2213716522002235"],"URL":"https:\/\/doi.org\/10.1016\/j.jgar.2022.09.009","relation":{},"ISSN":["2213-7165"],"issn-type":[{"type":"print","value":"2213-7165"}],"subject":[],"published":{"date-parts":[[2022,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Evaluation of changes in the faecal resistome associated with children's exposure to domestic animals and food animal production","name":"articletitle","label":"Article Title"},{"value":"Journal of Global Antimicrobial Resistance","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jgar.2022.09.009","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 The Author(s). Published by Elsevier Ltd on behalf of International Society for Antimicrobial Chemotherapy.","name":"copyright","label":"Copyright"}]}}