{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,4]],"date-time":"2026-11-04T04:11:55Z","timestamp":1793765515324,"version":"4.6.1"},"reference-count":33,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,9,1]],"date-time":"2024-09-01T00:00:00Z","timestamp":1725148800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,9,1]],"date-time":"2024-09-01T00:00:00Z","timestamp":1725148800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,5,17]],"date-time":"2024-05-17T00:00:00Z","timestamp":1715904000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Global Antimicrobial Resistance"],"published-print":{"date-parts":[[2024,9]]},"DOI":"10.1016\/j.jgar.2024.05.011","type":"journal-article","created":{"date-parts":[[2024,5,24]],"date-time":"2024-05-24T00:21:23Z","timestamp":1716510083000},"page":"111-115","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":10,"special_numbering":"C","title":["Draft genome sequences of clinical mastitis-associated Enterococcus faecalis and Enterococcus faecium carrying multiple antimicrobial resistance genes isolated from dairy cows"],"prefix":"10.1016","volume":"38","author":[{"given":"Mohammad H.","family":"Rahman","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1056-4761","authenticated-orcid":false,"given":"Mohamed E.","family":"El Zowalaty","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Linda","family":"Falgenhauer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mohammad Ferdousur Rahman","family":"Khan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5439-1412","authenticated-orcid":false,"given":"Jahangir","family":"Alam","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Najmun Nahar","family":"Popy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Md. Bahanur","family":"Rahman","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.jgar.2024.05.011_bib0001","doi-asserted-by":"crossref","first-page":"57","DOI":"10.3390\/antibiotics11010057","article-title":"Etiology of mastitis and antimicrobial resistance in dairy cattle farms in the western part of Romania","volume":"11","author":"Pascu","year":"2022","journal-title":"Antibiotics"},{"key":"10.1016\/j.jgar.2024.05.011_bib0002","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.928346","article-title":"Escherichia coli mastitis in dairy cattle: etiology, diagnosis, and treatment challenges","volume":"13","author":"Goulart","year":"2022","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jgar.2024.05.011_bib0003","doi-asserted-by":"crossref","first-page":"82","DOI":"10.1016\/j.micpath.2019.01.031","article-title":"Enterococcal isolates from bovine subclinical and clinical mastitis: antimicrobial resistance and integron-gene cassette distribution","volume":"129","author":"Gao","year":"2019","journal-title":"Microb Pathog"},{"issue":"5","key":"10.1016\/j.jgar.2024.05.011_bib0004","doi-asserted-by":"crossref","first-page":"e63413","DOI":"10.1371\/journal.pone.0063413","article-title":"Prevalence and antimicrobial susceptibility patterns of bacteria from milkmen and cows with clinical mastitis in and around Kampala, Uganda","volume":"8","author":"Kateete","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.jgar.2024.05.011_bib0005","doi-asserted-by":"crossref","first-page":"18609","DOI":"10.1038\/s41598-023-42838-z","article-title":"Antimicrobial resistance and whole genome sequencing of novel sequence types of Enterococcus faecalis, Enterococcus faecium, and Enterococcus durans isolated from livestock","volume":"13","author":"El Zowalaty","year":"2023","journal-title":"Sci Rep"},{"key":"10.1016\/j.jgar.2024.05.011_bib0006","doi-asserted-by":"crossref","DOI":"10.1155\/2022\/8101866","article-title":"Antimicrobial resistance, virulence profiles, and public health significance of Enterococcus faecalis isolated from clinical mastitis of cattle in Bangladesh","volume":"2022","author":"Bag","year":"2022","journal-title":"Biomed Res Int"},{"issue":"11","key":"10.1016\/j.jgar.2024.05.011_bib0007","doi-asserted-by":"crossref","first-page":"1407","DOI":"10.3390\/ani12111407","article-title":"Prevalence and virulence characteristics of Enterococcus faecalis and Enterococcus faecium in bovine mastitis milk compared to bovine normal raw milk in South Korea","volume":"12","author":"Kim","year":"2022","journal-title":"Animals (Basel)"},{"issue":"2","key":"10.1016\/j.jgar.2024.05.011_bib0008","doi-asserted-by":"crossref","first-page":"1217","DOI":"10.1007\/s42770-023-00929-z","article-title":"Resistance profile and biofilm production of Enterococcus spp., Staphylococcus sp., and Streptococcus spp. from dairy farms in southern Brazil","volume":"54","author":"Santos","year":"2023","journal-title":"Braz J Microbiol"},{"issue":"1","key":"10.1016\/j.jgar.2024.05.011_bib0009","doi-asserted-by":"crossref","first-page":"93","DOI":"10.2478\/jvetres-2019-0014","article-title":"Occurrence of enterococci in mastitic cow's milk and their antimicrobial resistance","volume":"63","author":"R\u00f3\u017ca\u0144ska","year":"2019","journal-title":"J Vet Res"},{"key":"10.1016\/j.jgar.2024.05.011_bib0010","doi-asserted-by":"crossref","first-page":"336","DOI":"10.1515\/acve-2016-0029","article-title":"Distribution of antibiotic resistance genes in Enterococcus spp. isolated from mastitis bovine milk","volume":"66","author":"Erbas","year":"2016","journal-title":"Acta Vet"},{"key":"10.1016\/j.jgar.2024.05.011_bib0011","doi-asserted-by":"crossref","first-page":"13536","DOI":"10.1038\/s41598-019-49468-4","article-title":"Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis","volume":"9","author":"Hoque","year":"2019","journal-title":"Sci Rep"},{"issue":"8","key":"10.1016\/j.jgar.2024.05.011_bib0012","doi-asserted-by":"crossref","DOI":"10.1128\/mra.00166-23","article-title":"Draft genome sequences of two clinical mastitis-associated Escherichia coli strains, of sequence type 101 and novel sequence type 13054, isolated from dairy cows in Bangladesh","volume":"12","author":"Rahman","year":"2023","journal-title":"Microbiol Resour Announce"},{"key":"10.1016\/j.jgar.2024.05.011_bib0013","doi-asserted-by":"crossref","first-page":"19","DOI":"10.7150\/jgen.90833","article-title":"Molecular identification and whole genome sequence analyses of methicillin-resistant and mastitis-associated Staphylococcus aureus sequence types 6 and 2454 isolated from dairy cows","volume":"12","author":"Rahman MH","year":"2024","journal-title":"J Genomics"},{"key":"10.1016\/j.jgar.2024.05.011_bib0014","doi-asserted-by":"crossref","first-page":"2515","DOI":"10.3168\/jds.2018-15424","article-title":"Bovine mastitis bacteria resolved by MALDI-TOF mass spectrometry","volume":"102","author":"Nonnemann","year":"2018","journal-title":"J Dairy Sci"},{"issue":"3","key":"10.1016\/j.jgar.2024.05.011_bib0015","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1007134","article-title":"ASA3P: an automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates","volume":"16","author":"Schwengers","year":"2020","journal-title":"PLoS Comput Biol"},{"issue":"5","key":"10.1016\/j.jgar.2024.05.011_bib0016","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J Comput Biol"},{"key":"10.1016\/j.jgar.2024.05.011_bib0017","doi-asserted-by":"crossref","first-page":"6614","DOI":"10.1093\/nar\/gkw569","article-title":"NCBI prokaryotic genome annotation pipeline","volume":"44","author":"Tatusova","year":"2016","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jgar.2024.05.011_bib0018","doi-asserted-by":"crossref","first-page":"124","DOI":"10.12688\/wellcomeopenres.14826.1","article-title":"Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications","volume":"3","author":"Jolley","year":"2018","journal-title":"Wellcome Open Res"},{"issue":"6","key":"10.1016\/j.jgar.2024.05.011_bib0019","doi-asserted-by":"crossref","first-page":"1963","DOI":"10.1128\/JCM.40.6.1963-1971.2002","article-title":"Multilocus sequence typing scheme for Enterococcus faecium","volume":"40","author":"Homan","year":"2002","journal-title":"J Clin Microbiol"},{"issue":"6","key":"10.1016\/j.jgar.2024.05.011_bib0020","doi-asserted-by":"crossref","first-page":"2220","DOI":"10.1128\/JCM.02596-05","article-title":"Multilocus sequence typing scheme for Enterococcus faecalis reveals hospital-adapted genetic complexes in a background of high rates of recombination","volume":"44","author":"Ruiz-Garbajosa","year":"2006","journal-title":"J Clin Microbiol"},{"issue":"12","key":"10.1016\/j.jgar.2024.05.011_bib0021","doi-asserted-by":"crossref","first-page":"3491","DOI":"10.1093\/jac\/dkaa345","article-title":"ResFinder 4.0 for predictions of phenotypes from genotypes","volume":"75","author":"Bortolaia","year":"2020","journal-title":"J Antimicrob Chemother"},{"issue":"D1","key":"10.1016\/j.jgar.2024.05.011_bib0022","doi-asserted-by":"crossref","first-page":"D912","DOI":"10.1093\/nar\/gkab1107","article-title":"VFDB 2022: a general classification scheme for bacterial virulence factors","volume":"50","author":"Liu","year":"2022","journal-title":"Nucleic Acids Res"},{"issue":"11","key":"10.1016\/j.jgar.2024.05.011_bib0023","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1186\/s13059-014-0524-x","article-title":"The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes","volume":"15","author":"Treangen","year":"2014","journal-title":"Genome Biol"},{"issue":"6","key":"10.1016\/j.jgar.2024.05.011_bib0024","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1093\/molbev\/msy096","article-title":"MEGA X: molecular evolutionary genetics analysis across computing platforms","volume":"35","author":"Kumar","year":"2018","journal-title":"Mol Biol Evol"},{"key":"10.1016\/j.jgar.2024.05.011_bib0025","doi-asserted-by":"crossref","first-page":"W242","DOI":"10.1093\/nar\/gkw290","article-title":"Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees","volume":"44","author":"Letunic","year":"2016","journal-title":"Nucleic Acids Res"},{"issue":"8","key":"10.1016\/j.jgar.2024.05.011_bib0026","first-page":"e00319","article-title":"Genomic, antimicrobial resistance, and public health insights into Enterococcus spp. from Australian chickens","volume":"57","author":"O'Dea","year":"2019","journal-title":"J Clin Microbiol"},{"issue":"3","key":"10.1016\/j.jgar.2024.05.011_bib0027","doi-asserted-by":"crossref","first-page":"e60589","DOI":"10.1371\/journal.pone.0060589","article-title":"Microevolutionary events involving narrow host plasmids influences local fixation of vancomycin-resistance in Enterococcus populations","volume":"8","author":"Freitas","year":"2013","journal-title":"PLoS One"},{"issue":"1\u20132","key":"10.1016\/j.jgar.2024.05.011_bib0028","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1016\/j.vetmic.2012.05.019","article-title":"Improved identification including MALDI-TOF mass spectrometry analysis of group D streptococci from bovine mastitis and subsequent molecular characterization of corresponding Enterococcus faecalis and Enterococcus faecium isolates","volume":"160","author":"Werner","year":"2012","journal-title":"Vet Microbiol"},{"issue":"6","key":"10.1016\/j.jgar.2024.05.011_bib0029","doi-asserted-by":"crossref","first-page":"1104","DOI":"10.1093\/jac\/dkp103","article-title":"Clonal expansion within clonal complex 2 and spread of vancomycin-resistant plasmids among different genetic lineages of Enterococcus faecalis from Portugal","volume":"63","author":"Freitas","year":"2009","journal-title":"J Antimicrob Chemother"},{"issue":"1","key":"10.1016\/j.jgar.2024.05.011_bib0030","doi-asserted-by":"crossref","first-page":"fiaa241","DOI":"10.1093\/femsec\/fiaa241","article-title":"Mammary microbial dysbiosis leads to the zoonosis of bovine mastitis: a One-Health perspective","volume":"97","author":"Maity","year":"2021","journal-title":"FEMS Microbiol Ecol"},{"issue":"3","key":"10.1016\/j.jgar.2024.05.011_bib0031","doi-asserted-by":"crossref","DOI":"10.1128\/CMR.00181-19","article-title":"Antimicrobial resistance in ESKAPE pathogens","volume":"33","author":"De Oliveira","year":"2020","journal-title":"Clin Microbiol Rev"},{"key":"10.1016\/j.jgar.2024.05.011_bib0032","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijheh.2022.114006","article-title":"Prevalence of ESKAPE pathogens in the environment: antibiotic resistance status, community-acquired infection and risk to human health","volume":"244","author":"Denissen","year":"2022","journal-title":"Int J Hyg Environ Health"},{"issue":"3","key":"10.1016\/j.jgar.2024.05.011_bib0033","doi-asserted-by":"crossref","first-page":"318","DOI":"10.1016\/S1473-3099(17)30753-3","article-title":"WHO Pathogens Priority List Working Group. Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis","volume":"18","author":"Tacconelli","year":"2018","journal-title":"Lancet Infect Dis"}],"container-title":["Journal of Global Antimicrobial Resistance"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2213716524000997?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2213716524000997?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,10,6]],"date-time":"2024-10-06T19:40:40Z","timestamp":1728243640000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2213716524000997"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,9]]},"references-count":33,"alternative-id":["S2213716524000997"],"URL":"https:\/\/doi.org\/10.1016\/j.jgar.2024.05.011","relation":{},"ISSN":["2213-7165"],"issn-type":[{"value":"2213-7165","type":"print"}],"subject":[],"published":{"date-parts":[[2024,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Draft genome sequences of clinical mastitis-associated Enterococcus faecalis and Enterococcus faecium carrying multiple antimicrobial resistance genes isolated from dairy cows","name":"articletitle","label":"Article Title"},{"value":"Journal of Global Antimicrobial Resistance","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jgar.2024.05.011","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"simple-article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Author(s). Published by Elsevier Ltd on behalf of International Society for Antimicrobial Chemotherapy.","name":"copyright","label":"Copyright"}]}}