{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T16:07:34Z","timestamp":1790179654394,"version":"4.1.0"},"reference-count":48,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,9,1]],"date-time":"2026-09-01T00:00:00Z","timestamp":1788220800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,5,28]],"date-time":"2026-05-28T00:00:00Z","timestamp":1779926400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100017964","name":"Tianjin Municipal Health Commission","doi-asserted-by":"publisher","award":["TJYXZDXK-3-014B"],"award-info":[{"award-number":["TJYXZDXK-3-014B"]}],"id":[{"id":"10.13039\/100017964","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Global Antimicrobial Resistance"],"published-print":{"date-parts":[[2026,9]]},"DOI":"10.1016\/j.jgar.2026.05.010","type":"journal-article","created":{"date-parts":[[2026,6,2]],"date-time":"2026-06-02T23:43:19Z","timestamp":1780443799000},"page":"36-45","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Molecular epidemiology and evolutionary analysis of multidrug-resistant Acinetobacter baumannii SToxf2499 clone at a tertiary hospital in Tianjin, China"],"prefix":"10.1016","volume":"50","author":[{"given":"Han","family":"Cheng","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tiejun","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jingyi","family":"Hu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yan","family":"Yan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Changwei","family":"Lei","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-2767-2432","authenticated-orcid":false,"given":"Qin","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.jgar.2026.05.010_bib0001","article-title":"Drug-resistant Acinetobacter baumannii: mortality, emerging treatments, and future pharmacological targets for a WHO priority pathogen","volume":"38","author":"Dubey","year":"2026","journal-title":"Clin Microbiol Rev"},{"key":"10.1016\/j.jgar.2026.05.010_bib0002","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.00086-24","article-title":"A panel of genotypically and phenotypically diverse clinical Acinetobacter baumannii strains for novel antibiotic development","volume":"12","author":"Sun","year":"2024","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.jgar.2026.05.010_bib0003","doi-asserted-by":"crossref","first-page":"629","DOI":"10.1016\/S0140-6736(21)02724-0","article-title":"Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis","volume":"399","year":"2022","journal-title":"Lancet"},{"key":"10.1016\/j.jgar.2026.05.010_bib0004","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1016\/S1473-3099(25)00118-5","article-title":"The WHO Bacterial Priority Pathogens List 2024: a prioritisation study to guide research, development, and public health strategies against antimicrobial resistance","volume":"25","author":"Sati","year":"2025","journal-title":"Lancet Infect Dis"},{"key":"10.1016\/j.jgar.2026.05.010_bib0005","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1093\/cid\/ciad556","article-title":"Clinical outcomes and bacterial characteristics of carbapenem-resistant Acinetobacter baumannii among patients from different global regions","volume":"78","author":"Wang","year":"2024","journal-title":"Clin Infect Dis"},{"key":"10.1016\/j.jgar.2026.05.010_bib0006","doi-asserted-by":"crossref","first-page":"3472","DOI":"10.1016\/j.jmb.2019.04.002","article-title":"\u03b2-lactamases and \u03b2-lactamase inhibitors in the 21st century","volume":"431","author":"Tooke","year":"2019","journal-title":"J Mol Biol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0007","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1016\/j.jgar.2020.01.001","article-title":"Dissemination of blaOXA-23-harbouring carbapenem-resistant Acinetobacter baumannii clones in Pakistan","volume":"21","author":"Khurshid","year":"2020","journal-title":"J Glob Antimicrob Resist"},{"key":"10.1016\/j.jgar.2026.05.010_bib0008","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02207-23","article-title":"Nosocomial surveillance of multidrug-resistant Acinetobacter baumannii: a genomic epidemiological study","volume":"12","author":"Duan","year":"2024","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.jgar.2026.05.010_bib0009","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES.2024.29.15.2300352","article-title":"Epidemiology, resistance genomics and susceptibility of Acinetobacter species: results from the 2020 Spanish nationwide surveillance study","volume":"29","author":"Lasarte-Monterrubio","year":"2024","journal-title":"Euro Surveill"},{"key":"10.1016\/j.jgar.2026.05.010_bib0010","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.02260-23","article-title":"A global view on carbapenem-resistant Acinetobacter baumannii","volume":"14","author":"M\u00fcller","year":"2023","journal-title":"mBio"},{"key":"10.1016\/j.jgar.2026.05.010_bib0011","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1186\/s13756-019-0614-3","article-title":"The effect of varying multidrug-resistance (MDR) definitions on rates of MDR Gram-negative rods","volume":"8","author":"Wolfensberger","year":"2019","journal-title":"Antimicrob Resist Infect Control"},{"key":"10.1016\/j.jgar.2026.05.010_bib0012","series-title":"Performance standards for antimicrobial susceptibility testing","year":"2024"},{"key":"10.1016\/j.jgar.2026.05.010_bib0013","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J Comput Biol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0014","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0163962","article-title":"SeqKit: a cross-platform and ultrafast toolkit for FASTA\/Q file manipulation","volume":"11","author":"Shen","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.jgar.2026.05.010_bib0015","doi-asserted-by":"crossref","first-page":"1925","DOI":"10.1093\/bioinformatics\/btz848","article-title":"GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database","volume":"36","author":"Chaumeil","year":"2019","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jgar.2026.05.010_bib0016","doi-asserted-by":"crossref","first-page":"D785","DOI":"10.1093\/nar\/gkab776","article-title":"GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy","volume":"50","author":"Parks","year":"2022","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jgar.2026.05.010_bib0017","doi-asserted-by":"crossref","first-page":"3140","DOI":"10.1073\/pnas.95.6.3140","article-title":"Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms","volume":"95","author":"Maiden","year":"1998","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1016\/j.jgar.2026.05.010_bib0018","article-title":"Identification of further variation at the lipooligosaccharide outer core locus in Acinetobacter baumannii genomes and extension of the OCL reference sequence database for Kaptive","volume":"9","author":"Sorbello","year":"2023","journal-title":"Microb Genom"},{"key":"10.1016\/j.jgar.2026.05.010_bib0019","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1186\/1471-2164-9-75","article-title":"The RAST Server: rapid annotations using subsystems technology","volume":"9","author":"Aziz","year":"2008","journal-title":"BMC Genomics"},{"key":"10.1016\/j.jgar.2026.05.010_bib0020","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-021-91456-0","article-title":"AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence","volume":"11","author":"Feldgarden","year":"2021","journal-title":"Sci Rep"},{"key":"10.1016\/j.jgar.2026.05.010_bib0021","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/nmeth.3176","article-title":"Fast and sensitive protein alignment using DIAMOND","volume":"12","author":"Buchfink","year":"2015","journal-title":"Nat Methods"},{"key":"10.1016\/j.jgar.2026.05.010_bib0022","doi-asserted-by":"crossref","first-page":"3895","DOI":"10.1128\/AAC.02412-14","article-title":"In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing","volume":"58","author":"Carattoli","year":"2014","journal-title":"Antimicrob Agents Chemother"},{"key":"10.1016\/j.jgar.2026.05.010_bib0023","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jgar.2026.05.010_bib0024","doi-asserted-by":"crossref","first-page":"180","DOI":"10.1186\/s13059-020-02090-4","article-title":"Producing polished prokaryotic pangenomes with the Panaroo pipeline","volume":"21","author":"Tonkin-Hill","year":"2020","journal-title":"Genome Biol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0025","doi-asserted-by":"crossref","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era","volume":"37","author":"Minh","year":"2020","journal-title":"Mol Biol Evol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0026","doi-asserted-by":"crossref","first-page":"W78","DOI":"10.1093\/nar\/gkae268","article-title":"Interactive Tree of Life (iTOL) v6: recent updates to the phylogenetic tree display and annotation tool","volume":"52","author":"Letunic","year":"2024","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jgar.2026.05.010_bib0027","doi-asserted-by":"crossref","first-page":"vew007","DOI":"10.1093\/ve\/vew007","article-title":"Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen)","volume":"2","author":"Rambaut","year":"2016","journal-title":"Virus Evol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0028","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gku1196","article-title":"Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins","volume":"43","author":"Croucher","year":"2015","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jgar.2026.05.010_bib0029","article-title":"SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments","volume":"2","author":"Page","year":"2016","journal-title":"Microb Genom"},{"key":"10.1016\/j.jgar.2026.05.010_bib0030","doi-asserted-by":"crossref","first-page":"vey016","DOI":"10.1093\/ve\/vey016","article-title":"Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10","volume":"4","author":"Suchard","year":"2018","journal-title":"Virus Evol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0031","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1006650","article-title":"BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis","volume":"15","author":"Bouckaert","year":"2019","journal-title":"PLoS Comput Biol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0032","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLoS Comput Biol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0033","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1093\/jac\/dkaa390","article-title":"Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: mobileElementFinder","volume":"76","author":"Johansson","year":"2021","journal-title":"J Antimicrob Chemother"},{"key":"10.1016\/j.jgar.2026.05.010_bib0034","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1186\/1471-2164-12-402","article-title":"BLAST ring image generator (BRIG): simple prokaryote genome comparisons","volume":"12","author":"Alikhan","year":"2011","journal-title":"BMC Genomics"},{"key":"10.1016\/j.jgar.2026.05.010_bib0035","doi-asserted-by":"crossref","first-page":"1009","DOI":"10.1093\/bioinformatics\/btr039","article-title":"Easyfig: a genome comparison visualizer","volume":"27","author":"Sullivan","year":"2011","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jgar.2026.05.010_bib0036","doi-asserted-by":"crossref","first-page":"D33","DOI":"10.1093\/nar\/gkad1044","article-title":"Database resources of the National Center for Biotechnology Information","volume":"52","author":"Sayers","year":"2024","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.jgar.2026.05.010_bib0037","doi-asserted-by":"crossref","first-page":"2473","DOI":"10.1093\/bioinformatics\/btab007","article-title":"clinker & clustermap.js: automatic generation of gene cluster comparison figures","volume":"37","author":"Gilchrist","year":"2021","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jgar.2026.05.010_bib0038","doi-asserted-by":"crossref","first-page":"829","DOI":"10.3390\/microorganisms13040829","article-title":"The multifaceted landscape of healthcare-associated infections caused by carbapenem-resistant Acinetobacter baumannii","volume":"13","author":"Russo","year":"2025","journal-title":"Microorganisms"},{"key":"10.1016\/j.jgar.2026.05.010_bib0039","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1016\/j.jgar.2023.04.007","article-title":"The clinical features and genomic epidemiology of carbapenem-resistant Acinetobacter baumannii infections at a tertiary hospital in Vietnam","volume":"33","author":"Diep","year":"2023","journal-title":"J Glob Antimicrob Resist"},{"key":"10.1016\/j.jgar.2026.05.010_bib0040","doi-asserted-by":"crossref","first-page":"1867","DOI":"10.2147\/IDR.S498212","article-title":"Risk and prognostic factors for bloodstream infections due to clonally transmitted Acinetobacter baumannii ST2 with armA, blaOXA-23, and blaOXA-66: a retrospective study","volume":"18","author":"Ji","year":"2025","journal-title":"Infect Drug Resist"},{"key":"10.1016\/j.jgar.2026.05.010_bib0041","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1016\/j.jgar.2023.06.011","article-title":"Outbreak of high-risk XDR CRAB of international clone 2 (IC2) in Rio Janeiro, Brazil","volume":"34","author":"Morgado","year":"2023","journal-title":"J Glob Antimicrob Resist"},{"key":"10.1016\/j.jgar.2026.05.010_bib0042","article-title":"Endemicity and diversification of carbapenem-resistant Acinetobacter baumannii in an intensive care unit","volume":"37","author":"Doughty","year":"2023","journal-title":"Lancet Reg Health West Pac"},{"key":"10.1016\/j.jgar.2026.05.010_bib0043","doi-asserted-by":"crossref","DOI":"10.1128\/aac.01262-24","article-title":"Characterization and genomic analysis of the highly virulent Acinetobacter baumannii ST1791 strain dominating in Anhui, China","volume":"69","author":"He","year":"2025","journal-title":"Antimicrob Agents Chemother"},{"key":"10.1016\/j.jgar.2026.05.010_bib0044","doi-asserted-by":"crossref","first-page":"102","DOI":"10.1007\/BF00326061","article-title":"IS15, a new insertion sequence widely spread in R plasmids of Gram-negative bacteria","volume":"189","author":"Labigne-Roussel","year":"1983","journal-title":"Mol Gen Genet"},{"key":"10.1016\/j.jgar.2026.05.010_bib0045","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1007\/s00294-024-01307-4","article-title":"Whole-genome evaluation and prophages characterization associated with genome of carbapenem-resistant Acinetobacter baumannii UOL-KIMZ-24-2","volume":"71","author":"Fatima","year":"2025","journal-title":"Curr Genet"},{"key":"10.1016\/j.jgar.2026.05.010_bib0046","doi-asserted-by":"crossref","DOI":"10.1016\/j.meegid.2023.105404","article-title":"Clonal evolution and antimicrobial resistance of Acinetobacter baumannii isolates from Korean hospitals over the last decade","volume":"108","author":"Jun","year":"2023","journal-title":"Infect Genet Evol"},{"key":"10.1016\/j.jgar.2026.05.010_bib0047","doi-asserted-by":"crossref","first-page":"10","DOI":"10.1016\/j.bbrc.2022.10.095","article-title":"Eugenol and geraniol impede Csu-pilus assembly and evades multidrug-resistant Acinetobacter baumannii biofilms: in-vitro and in-silico evidence","volume":"636","author":"Choudhary","year":"2022","journal-title":"Biochem Biophys Res Commun"},{"key":"10.1016\/j.jgar.2026.05.010_bib0048","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1038\/s41522-023-00465-6","article-title":"Csu pili dependent biofilm formation and virulence of Acinetobacter baumannii","volume":"9","author":"Ahmad","year":"2023","journal-title":"NPJ Biofilms Microbiomes"}],"container-title":["Journal of Global Antimicrobial Resistance"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2213716526000792?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2213716526000792?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T15:48:09Z","timestamp":1790178489000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2213716526000792"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,9]]},"references-count":48,"alternative-id":["S2213716526000792"],"URL":"https:\/\/doi.org\/10.1016\/j.jgar.2026.05.010","relation":{},"ISSN":["2213-7165"],"issn-type":[{"value":"2213-7165","type":"print"}],"subject":[],"published":{"date-parts":[[2026,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Molecular epidemiology and evolutionary analysis of multidrug-resistant Acinetobacter baumannii SToxf2499 clone at a tertiary hospital in Tianjin, China","name":"articletitle","label":"Article Title"},{"value":"Journal of Global Antimicrobial Resistance","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jgar.2026.05.010","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Author(s). Published by Elsevier Ltd on behalf of International Society for Antimicrobial Chemotherapy.","name":"copyright","label":"Copyright"}]}}