{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,29]],"date-time":"2026-10-29T12:36:14Z","timestamp":1793277374704,"version":"4.5.0"},"reference-count":100,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,8,1]],"date-time":"2025-08-01T00:00:00Z","timestamp":1754006400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["42377032"],"award-info":[{"award-number":["42377032"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["42177234"],"award-info":[{"award-number":["42177234"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004479","name":"Jiangxi Provincial Natural Science Foundation","doi-asserted-by":"publisher","award":["20232ACB213016"],"award-info":[{"award-number":["20232ACB213016"]}],"id":[{"id":"10.13039\/501100004479","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012165","name":"Key Technologies Research and Development Program","doi-asserted-by":"publisher","award":["2022YFD1700805"],"award-info":[{"award-number":["2022YFD1700805"]}],"id":[{"id":"10.13039\/501100012165","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Hazardous Materials"],"published-print":{"date-parts":[[2025,8]]},"DOI":"10.1016\/j.jhazmat.2025.138658","type":"journal-article","created":{"date-parts":[[2025,5,18]],"date-time":"2025-05-18T01:53:34Z","timestamp":1747533214000},"page":"138658","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":6,"special_numbering":"C","title":["Integrated multi-omics and DNA stable-isotope probing approaches to reveal soil-ryegrass response to ionic rare earth mineral ammonium-lead contamination"],"prefix":"10.1016","volume":"494","author":[{"given":"Huixian","family":"Yang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9914-6808","authenticated-orcid":false,"given":"Jun","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"4","key":"10.1016\/j.jhazmat.2025.138658_bib1","doi-asserted-by":"crossref","first-page":"1285","DOI":"10.1016\/j.gsf.2018.12.005","article-title":"Rare earth elements: a review of applications, occurrence, exploration, analysis, recycling, and environmental impact","volume":"10","author":"Balaram","year":"2019","journal-title":"Geosci Front"},{"key":"10.1016\/j.jhazmat.2025.138658_bib2","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.130913","article-title":"Denitrifying bacteria agent together with composite materials enhanced soil chemical properties and denitrifying functions in rare earth tailings: a field study","volume":"448","author":"Dai","year":"2023","journal-title":"J Hazard Mater"},{"key":"10.1016\/j.jhazmat.2025.138658_bib3","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2020.115449","article-title":"Ammonia nitrogen sources and pollution along soil profiles in an in-situ leaching rare earth ore","volume":"267","author":"Zhang","year":"2020","journal-title":"Environ Pollut"},{"key":"10.1016\/j.jhazmat.2025.138658_bib4","doi-asserted-by":"crossref","DOI":"10.1016\/j.chemosphere.2021.131096","article-title":"Simultaneous hyperaccumulation of rare earth elements, manganese and aluminum in Phytolacca americana in response to soil properties","volume":"282","author":"Liu","year":"2021","journal-title":"Chemosphere"},{"key":"10.1016\/j.jhazmat.2025.138658_bib5","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.152075","article-title":"Biogeochemical cycles of nutrients, rare earth elements (REEs) and Al in soil-plant system in ion-adsorption REE mine tailings remediated with amendment and ramie (Boehmeria nivea L.)","volume":"809","author":"Liu","year":"2022","journal-title":"Sci Total Environ"},{"key":"10.1016\/j.jhazmat.2025.138658_bib6","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2020.142521","article-title":"Microbial communities in rare earth mining soil after in-situ leaching mining","volume":"755","author":"Liu","year":"2021","journal-title":"Sci Total Environ"},{"issue":"6","key":"10.1016\/j.jhazmat.2025.138658_bib7","doi-asserted-by":"crossref","first-page":"1362","DOI":"10.1111\/jipb.13467","article-title":"The alleviation of ammonium toxicity in plants","volume":"65","author":"Xiao","year":"2023","journal-title":"J Integr Plant Biol"},{"issue":"9","key":"10.1016\/j.jhazmat.2025.138658_bib8","doi-asserted-by":"crossref","first-page":"1514","DOI":"10.1038\/s41477-023-01494-x","article-title":"Plastid-localized amino acid metabolism coordinates rice ammonium tolerance and nitrogen use efficiency","volume":"9","author":"Xie","year":"2023","journal-title":"Nat Plants"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib9","doi-asserted-by":"crossref","first-page":"4944","DOI":"10.1038\/s41467-021-25238-7","article-title":"Excessive ammonium assimilation by plastidic glutamine synthetase causes ammonium toxicity in Arabidopsis thaliana","volume":"12","author":"Hachiya","year":"2021","journal-title":"Nat Commun"},{"key":"10.1016\/j.jhazmat.2025.138658_bib10","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.133079","article-title":"Physiological and transcriptomic response reveals new insight into manganese tolerance of Celosia argentea Linn","volume":"465","author":"Liang","year":"2024","journal-title":"J Hazard Mater"},{"key":"10.1016\/j.jhazmat.2025.138658_bib11","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.133263","article-title":"Transcriptome-wide m6A methylation profiling identifies GmAMT1;1 as a promoter of lead and cadmium tolerance in soybean nodules","volume":"465","author":"Ma","year":"2024","journal-title":"J Hazard Mater"},{"key":"10.1016\/j.jhazmat.2025.138658_bib12","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2024.134450","article-title":"Pioneer plants enhance soil multifunctionality by reshaping underground multitrophic community during natural succession of an abandoned rare earth mine tailing","volume":"472","author":"Li","year":"2024","journal-title":"J Hazard Mater"},{"key":"10.1016\/j.jhazmat.2025.138658_bib13","doi-asserted-by":"crossref","DOI":"10.1016\/j.jclepro.2024.141653","article-title":"Drilling into the physiology, transcriptomics, and metabolomics to enhance insight on Vallisneria denseserrulata responses to nanoplastics and metalloid co-stress","volume":"448","author":"Tang","year":"2024","journal-title":"J Clean Prod"},{"issue":"2","key":"10.1016\/j.jhazmat.2025.138658_bib14","doi-asserted-by":"crossref","first-page":"1010","DOI":"10.1021\/acs.est.3c03649","article-title":"Toxicity mechanisms of nanoplastics on crop growth, interference of phyllosphere microbes, and evidence for foliar penetration and translocation","volume":"58","author":"Shi","year":"2023","journal-title":"Environ Sci Technol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib15","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2020.109962","article-title":"NH4+-N\/NO3--N ratio controlling nitrogen transformation accompanied with NO2--N accumulation in the oxic-anoxic transition zone","volume":"189","author":"Liu","year":"2020","journal-title":"Environ Res"},{"key":"10.1016\/j.jhazmat.2025.138658_bib16","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2023.116975","article-title":"Transport and distribution of residual nitrogen in ion-adsorption rare earth tailings","volume":"237","author":"Ou","year":"2023","journal-title":"Environ Res"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib17","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1007\/s11104-020-04467-7","article-title":"Carbon and nitrogen cycling in a lead polluted grassland evaluated using stable isotopes (\u03b413C and \u03b415N) and microbial, plant and soil parameters","volume":"449","author":"Rijk","year":"2020","journal-title":"Plant Soil"},{"issue":"8","key":"10.1016\/j.jhazmat.2025.138658_bib18","doi-asserted-by":"crossref","first-page":"661","DOI":"10.1016\/j.tplants.2017.05.004","article-title":"How Plant Root Exudates Shape the Nitrogen Cycle","volume":"22","author":"Coskun","year":"2017","journal-title":"Trends Plant Sci"},{"issue":"11","key":"10.1016\/j.jhazmat.2025.138658_bib19","doi-asserted-by":"crossref","first-page":"2561","DOI":"10.1038\/s41396-022-01300-0","article-title":"Nitrogen cycling and microbial cooperation in the terrestrial subsurface","volume":"16","author":"Mosley","year":"2022","journal-title":"Isme J"},{"key":"10.1016\/j.jhazmat.2025.138658_bib20","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2021.113642","article-title":"Vertical distribution and occurrence state of the residual leaching agent (ammonium sulfate) in the weathered crust elution-deposited rare earth ore","volume":"299","author":"Huang","year":"2021","journal-title":"J Environ Manag"},{"key":"10.1016\/j.jhazmat.2025.138658_bib21","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2022.157854","article-title":"Effects of composite materials and revegetation on soil nutrients, chemical and microbial properties in rare earth tailings","volume":"850","author":"Dai","year":"2022","journal-title":"Sci Total Environ"},{"issue":"10","key":"10.1016\/j.jhazmat.2025.138658_bib22","doi-asserted-by":"crossref","first-page":"1522","DOI":"10.1134\/S106422932360077X","article-title":"Analysis of the Sources and Risk Assessment of Heavy Metals in the Soil of an Ion-Type Rare Earth Mining Area in Southern Jiangxi","volume":"56","author":"Zhang","year":"2023","journal-title":"Eurasia Soil Sci"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib23","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1007\/s11104-019-04110-0","article-title":"The relative contributions of pH, organic anions, and phosphatase to rhizosphere soil phosphorus mobilization and crop phosphorus uptake in maize\/alfalfa polyculture","volume":"447","author":"Sun","year":"2020","journal-title":"Plant Soil"},{"key":"10.1016\/j.jhazmat.2025.138658_bib24","doi-asserted-by":"crossref","first-page":"1150","DOI":"10.1016\/j.scitotenv.2018.11.317","article-title":"Effects of arbuscular mycorrhizal fungi, biochar and cadmium on the yield and element uptake of Medicago sativa","volume":"655","author":"Zhang","year":"2019","journal-title":"Sci Total Environ"},{"issue":"44","key":"10.1016\/j.jhazmat.2025.138658_bib25","doi-asserted-by":"crossref","first-page":"16873","DOI":"10.1021\/acs.est.3c04820","article-title":"Stable stable isotope ratios trace the rice uptake of cadmium from atmospheric deposition via leaves and roots","volume":"57","author":"Xia","year":"2023","journal-title":"Environ Sci Technol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib26","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.174439","article-title":"Interactive effects of ammonium sulfate and lead on alfalfa in rare earth tailings: physiological responses and toxicity thresholds","volume":"947","author":"Yang","year":"2024","journal-title":"Sci Total Environ"},{"key":"10.1016\/j.jhazmat.2025.138658_bib27","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.161544","article-title":"Oxidative response of rice (Oryza sativa L.) seedlings to quinolone antibiotics and its correlation with phyllosphere microbes and antibiotic resistance genes","volume":"867","author":"Jin","year":"2023","journal-title":"Sci Total Environ"},{"issue":"001","key":"10.1016\/j.jhazmat.2025.138658_bib28","first-page":"113","article-title":"Determining 15N abundance in ammonium, nitrate and nitrite in soil by measuring nitrous oxide produced","volume":"50","author":"Cao","year":"2013","journal-title":"Acta Pedologica Sin"},{"issue":"6","key":"10.1016\/j.jhazmat.2025.138658_bib29","doi-asserted-by":"crossref","first-page":"837","DOI":"10.1016\/0038-0717(85)90144-0","article-title":"Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil","volume":"17","author":"Brookes","year":"1985","journal-title":"Soil Biol Biochem"},{"key":"10.1016\/j.jhazmat.2025.138658_bib30","doi-asserted-by":"crossref","DOI":"10.1016\/j.geoderma.2022.115713","article-title":"Biochar amendment benefits 15N fertilizer retention and rhizosphere N enrichment in a maize-soil system","volume":"412","author":"Zhang","year":"2022","journal-title":"Geoderma"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib31","doi-asserted-by":"crossref","first-page":"108","DOI":"10.1186\/s40168-022-01287-y","article-title":"Reduced chemodiversity suppresses rhizosphere microbiome functioning in the mono-cropped agroecosystems","volume":"10","author":"Li","year":"2022","journal-title":"Microbiome"},{"key":"10.1016\/j.jhazmat.2025.138658_bib32","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2023.109226","article-title":"Active microbial taxa preferentially assimilate inorganic nitrogen in acidic upland soils using a 15N-DNA-SIP approach","volume":"188","author":"Liu","year":"2024","journal-title":"Soil Biol Biochem"},{"key":"10.1016\/j.jhazmat.2025.138658_bib33","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2019.135186","article-title":"Regulatory mechanisms of nitrogen (N) on cadmium (Cd) uptake and accumulation in plants: a review","volume":"708","author":"Yang","year":"2020","journal-title":"Sci Total Environ"},{"issue":"2","key":"10.1016\/j.jhazmat.2025.138658_bib34","doi-asserted-by":"crossref","first-page":"277","DOI":"10.3390\/antiox10020277","article-title":"Abiotic stress and reactive oxygen species: generation, signaling, and defense mechanisms","volume":"10","author":"Sachdev","year":"2021","journal-title":"Antioxid-Basel"},{"issue":"10","key":"10.1016\/j.jhazmat.2025.138658_bib35","doi-asserted-by":"crossref","DOI":"10.3390\/plants8100403","article-title":"Nitric oxide enhances cytotoxicity of lead by modulating the generation of reactive oxygen species and is involved in the regulation of Pb2+\u2009and Ca2+\u2009fluxes in tobacco BY-2 cells","volume":"8","author":"Wu","year":"2019","journal-title":"Plants"},{"issue":"4","key":"10.1016\/j.jhazmat.2025.138658_bib36","doi-asserted-by":"crossref","first-page":"1859","DOI":"10.1104\/pp.113.225961","article-title":"Rapid ammonia gas transport accounts for futile transmembrane cycling under NH3\/NH4+ toxicity in plant roots","volume":"163","author":"Coskun","year":"2013","journal-title":"Plant Physiol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib37","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1016\/j.freeradbiomed.2016.03.033","article-title":"The role of mitochondria in plant development and stress tolerance","volume":"100","author":"Liberatore","year":"2016","journal-title":"Free Radic Bio Med"},{"issue":"9","key":"10.1016\/j.jhazmat.2025.138658_bib38","doi-asserted-by":"crossref","first-page":"1100","DOI":"10.3390\/plants11091100","article-title":"Abiotic stresses in plants and their markers: a practice view of plant stress responses and programmed cell death mechanisms","volume":"11","author":"de Melo","year":"2022","journal-title":"Plants-Basel"},{"key":"10.1016\/j.jhazmat.2025.138658_bib39","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.168559","article-title":"Responses of non-structural carbohydrates and biomass in plant to heavy metal treatment","volume":"909","author":"Yang","year":"2024","journal-title":"Sci Total Environ"},{"key":"10.1016\/j.jhazmat.2025.138658_bib40","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1016\/j.plaphy.2019.10.032","article-title":"Oxidative stress induced by cadmium in lettuce (Lactuca sativa Linn.): Oxidative stress indicators and prediction of their genes","volume":"146","author":"Kolahi","year":"2020","journal-title":"Plant Physiol Biochem"},{"issue":"2","key":"10.1016\/j.jhazmat.2025.138658_bib41","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1021\/acs.est.8b05304","article-title":"Potential toxicity of complex mixtures in surface waters from a nationwide survey of United States streams: Identifying in vitro bioactivities and causative chemicals","volume":"53","author":"Blackwell","year":"2019","journal-title":"Environ Sci Technol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib42","doi-asserted-by":"crossref","first-page":"1585","DOI":"10.1016\/j.scitotenv.2018.04.375","article-title":"Plant uptake and translocation of contaminants of emerging concern in soil","volume":"636","author":"Pullagurala","year":"2018","journal-title":"Sci Total Environ"},{"key":"10.1016\/j.jhazmat.2025.138658_bib43","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2020.123005","article-title":"Comprehensive phenotyping and multi-omic profiling in the toxicity assessment of nanopolystyrene with different surface properties","volume":"399","author":"Kim","year":"2020","journal-title":"J Hazard Mater"},{"issue":"3","key":"10.1016\/j.jhazmat.2025.138658_bib44","doi-asserted-by":"crossref","first-page":"1123","DOI":"10.1111\/nph.17072","article-title":"Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs","volume":"232","author":"Freschet","year":"2021","journal-title":"N Phytol"},{"issue":"5","key":"10.1016\/j.jhazmat.2025.138658_bib45","article-title":"MdbZIP44-MdCPRF2-like-Md\u03b1-GP2 regulate starch and sugar metabolism in apple under nitrogen supply","volume":"11","author":"Cao","year":"2024","journal-title":"Hortic Res-Engl"},{"key":"10.1016\/j.jhazmat.2025.138658_bib46","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2024.134851","article-title":"An integration of physiology, transcriptomics, and proteomics reveals carbon and nitrogen metabolism responses in alfalfa (Medicago sativa L.) exposed to titanium dioxide nanoparticles","volume":"474","author":"Chen","year":"2024","journal-title":"J Hazard Mater"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib47","doi-asserted-by":"crossref","first-page":"8693","DOI":"10.1038\/s41467-024-52945-8","article-title":"AtPRMT3-RPS2B promotes ribosome biogenesis and coordinates growth and cold adaptation trade-off","volume":"15","author":"Wang","year":"2024","journal-title":"Nat Commun"},{"key":"10.1016\/j.jhazmat.2025.138658_bib48","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2021.127966","article-title":"The role and its transcriptome mechanisms of cell wall polysaccharides in vanadium detoxication of rice","volume":"425","author":"Yuan","year":"2022","journal-title":"J Hazard Mater"},{"issue":"47","key":"10.1016\/j.jhazmat.2025.138658_bib49","doi-asserted-by":"crossref","first-page":"20352","DOI":"10.1073\/pnas.1012999107","article-title":"Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states","volume":"107","author":"Hashimoto","year":"2010","journal-title":"P Natl Acad Sci USA"},{"issue":"9","key":"10.1016\/j.jhazmat.2025.138658_bib50","doi-asserted-by":"crossref","first-page":"2930","DOI":"10.1105\/tpc.110.078154","article-title":"Endoplasmic reticulum protein quality control and its relationship to environmental stress responses in plants","volume":"22","author":"Liu","year":"2010","journal-title":"Plant Cell"},{"issue":"9","key":"10.1016\/j.jhazmat.2025.138658_bib51","doi-asserted-by":"crossref","first-page":"924","DOI":"10.1038\/s41477-019-0502-0","article-title":"Cell wall integrity maintenance during plant development and interaction with the environment","volume":"5","author":"Vaahtera","year":"2019","journal-title":"Nat Plants"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib52","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1016\/j.molp.2021.09.016","article-title":"Toxic metals and metalloids: Uptake, transport, detoxification, phytoremediation, and crop improvement for safer food","volume":"15","author":"Zhao","year":"2022","journal-title":"Mol Plant"},{"key":"10.1016\/j.jhazmat.2025.138658_bib53","doi-asserted-by":"crossref","DOI":"10.1016\/j.envpol.2021.116834","article-title":"Ammonium detoxification mechanism of ammonium-tolerant duckweed (Landoltia punctata) revealed by carbon and nitrogen metabolism under ammonium stress","volume":"277","author":"Tian","year":"2021","journal-title":"Environ Pollut"},{"issue":"5","key":"10.1016\/j.jhazmat.2025.138658_bib54","doi-asserted-by":"crossref","first-page":"1029","DOI":"10.1111\/pce.12666","article-title":"Lipid signalling in plant responses to abiotic stress","volume":"39","author":"Hou","year":"2016","journal-title":"Plant Cell Environ"},{"issue":"10","key":"10.1016\/j.jhazmat.2025.138658_bib55","doi-asserted-by":"crossref","first-page":"1443","DOI":"10.3390\/biom13101443","article-title":"Nitrogen Journey in Plants: From Uptake to Metabolism, Stress Response, and Microbe Interaction","volume":"13","author":"Zayed","year":"2023","journal-title":"Biomolecules"},{"issue":"4","key":"10.1016\/j.jhazmat.2025.138658_bib56","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1007\/s00299-011-1182-z","article-title":"ArabidopsisACA7, encoding a putative auto-regulated Ca2+\u2009-ATPase, is required for normal pollen development","volume":"31","author":"Lucca","year":"2012","journal-title":"Plant Cell Rep"},{"issue":"4","key":"10.1016\/j.jhazmat.2025.138658_bib57","doi-asserted-by":"crossref","first-page":"1239","DOI":"10.1093\/jxb\/erz521","article-title":"The role of P-type IIA and P-type IIB Ca2+\u2009-ATPases in plant development and growth","volume":"71","author":"Garc\u00eda Bossi","year":"2019","journal-title":"J Exp Bot"},{"key":"10.1016\/j.jhazmat.2025.138658_bib58","article-title":"Molecular Interaction and Evolution of Jasmonate Signaling With Transport and Detoxification of Heavy Metals and Metalloids in Plants","volume":"12 - 2021","author":"Chen","year":"2021","journal-title":"Front Plant Sci"},{"key":"10.1016\/j.jhazmat.2025.138658_bib59","doi-asserted-by":"crossref","DOI":"10.1016\/j.phytochem.2021.112663","article-title":"ABCG transporter proteins with beneficial activity on plants","volume":"184","author":"Dhara","year":"2021","journal-title":"Phytochemistry"},{"key":"10.1016\/j.jhazmat.2025.138658_bib60","doi-asserted-by":"crossref","DOI":"10.1016\/j.biotechadv.2023.108245","article-title":"Carbohydrate flow through agricultural ecosystems: Implications for synthesis and microbial conversion of carbohydrates","volume":"69","author":"Low","year":"2023","journal-title":"Biotechnol Adv"},{"key":"10.1016\/j.jhazmat.2025.138658_bib61","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1016\/bs.ctm.2019.07.001","article-title":"Structural and signaling role of lipids in plasma membrane repair","volume":"84","author":"Horn","year":"2019","journal-title":"Curr Top Membr"},{"key":"10.1016\/j.jhazmat.2025.138658_bib62","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodchem.2024.138612","article-title":"Metabolomics profiling reveals the detoxification and tolerance behavior of two bread wheat (Triticum aestivum L.)varieties under arsenate stress","volume":"443","author":"Saeed","year":"2024","journal-title":"Food Chem"},{"issue":"11","key":"10.1016\/j.jhazmat.2025.138658_bib63","doi-asserted-by":"crossref","first-page":"4038","DOI":"10.1093\/jxb\/erab019","article-title":"Organic acids: versatile stress-response roles in plants","volume":"72","author":"Panchal","year":"2021","journal-title":"J Exp Bot"},{"key":"10.1016\/j.jhazmat.2025.138658_bib64","doi-asserted-by":"crossref","DOI":"10.1016\/j.ecoenv.2020.111152","article-title":"Analysis of the effect of cadmium stress on root exudates of Sedum plumbizincicola based on metabolomics","volume":"205","author":"Sun","year":"2020","journal-title":"Ecotox Environ Safe"},{"key":"10.1016\/j.jhazmat.2025.138658_bib65","doi-asserted-by":"crossref","first-page":"928","DOI":"10.3389\/fpls.2020.00928","article-title":"Connections between amino acid metabolisms in plants: Lysine as an example","volume":"11","author":"Yang","year":"2020","journal-title":"Front Plant Sci"},{"issue":"23","key":"10.1016\/j.jhazmat.2025.138658_bib66","doi-asserted-by":"crossref","first-page":"15776","DOI":"10.1021\/acs.est.1c04059","article-title":"Transcriptomics and metabolomics revealed the biological response of Chlorella pyrenoidesa to single and repeated exposures of AgNPs at different concentrations","volume":"55","author":"Cao","year":"2021","journal-title":"Environ Sci Technol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib67","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2023.168421","article-title":"Toxic effects and mechanisms of engineered nanoparticles and nanoplastics on lettuce(Lactuca sativa L","volume":"908","author":"Li","year":"2024","journal-title":"Sci Total Environ"},{"issue":"7768","key":"10.1016\/j.jhazmat.2025.138658_bib68","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1038\/s41586-019-1442-6","article-title":"Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism","volume":"572","author":"Olin-Sandoval","year":"2019","journal-title":"Nature"},{"key":"10.1016\/j.jhazmat.2025.138658_bib69","doi-asserted-by":"crossref","DOI":"10.1016\/j.jhazmat.2023.133263","article-title":"Transcriptome-wide m6A methylation profiling identifies GmAMT1;1 as a promoter of lead and cadmium tolerance in soybean nodules","volume":"465","author":"Ma","year":"2024","journal-title":"J Hazard Mater"},{"key":"10.1016\/j.jhazmat.2025.138658_bib70","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2021.148208","article-title":"Plant inputs mediate the linkage between soil carbon and net nitrogen mineralization","volume":"790","author":"Zhang","year":"2021","journal-title":"Sci Total Environ"},{"key":"10.1016\/j.jhazmat.2025.138658_bib71","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2021.108541","article-title":"Root exudates shift how N mineralization and N fixation contribute to the plant-available N supply in low fertility soils","volume":"165","author":"Liu","year":"2022","journal-title":"Soil Biol Biochem"},{"key":"10.1016\/j.jhazmat.2025.138658_bib72","doi-asserted-by":"crossref","DOI":"10.1016\/j.envres.2021.111737","article-title":"Understanding the effect of free ammonia on microbial nitrification mechanisms in suspended activated sludge bioreactors","volume":"200","author":"Sun","year":"2021","journal-title":"Environ Res"},{"key":"10.1016\/j.jhazmat.2025.138658_bib73","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2024.109458","article-title":"Can heavy metal pollution stress reduce microbial carbon-use efficiencies?","volume":"195","author":"Soares","year":"2024","journal-title":"Soil Biol Biochem"},{"issue":"4","key":"10.1016\/j.jhazmat.2025.138658_bib74","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1016\/j.tplants.2023.09.007","article-title":"Nitrogen-loss and carbon-footprint reduction by plant-rhizosphere exudates","volume":"29","author":"Lu","year":"2024","journal-title":"Trends Plant Sci"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib75","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1186\/s12870-020-02363-x","article-title":"Internal ammonium excess induces ROS-mediated reactions and causes carbon scarcity in rice","volume":"20","author":"Yang","year":"2020","journal-title":"Bmc Plant Biol"},{"issue":"1-2","key":"10.1016\/j.jhazmat.2025.138658_bib76","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1007\/s11104-012-1575-y","article-title":"Nitrogen use efficiency (NUE) in rice links to NH4+\u2009toxicity and futile NH4+\u2009cycling in roots","volume":"369","author":"Chen","year":"2013","journal-title":"Plant Soil"},{"issue":"8","key":"10.1016\/j.jhazmat.2025.138658_bib77","doi-asserted-by":"crossref","first-page":"3185","DOI":"10.1093\/jxb\/erab057","article-title":"Ammonium supply induces differential metabolic adaptive responses in tomato according to leaf phenological stage","volume":"72","author":"Poucet","year":"2021","journal-title":"J Exp Bot"},{"key":"10.1016\/j.jhazmat.2025.138658_bib78","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.657986","article-title":"The origin of niches and species in the bacterial world","volume":"12","author":"Baquero","year":"2021","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib79","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1016\/j.soilbio.2016.08.020","article-title":"sp in current agriculture: from the laboratory to the field","volume":"103","author":"Cass\u00e1n","year":"2016","journal-title":"Soil Biol Biochem"},{"key":"10.1016\/j.jhazmat.2025.138658_bib80","doi-asserted-by":"crossref","DOI":"10.1016\/j.micres.2020.126672","article-title":"Selection of plant growth promoting rhizobacteria sharing suitable features to be commercially developed as biostimulant products","volume":"245","author":"Vasseur-Coronado","year":"2021","journal-title":"Microbiol Res"},{"key":"10.1016\/j.jhazmat.2025.138658_bib81","doi-asserted-by":"crossref","DOI":"10.7554\/eLife.59726","article-title":"Global landscape of phenazine biosynthesis and biodegradation reveals species-specific colonization patterns in agricultural soils and crop microbiomes","volume":"9","author":"Dar","year":"2020","journal-title":"Elife"},{"key":"10.1016\/j.jhazmat.2025.138658_bib82","doi-asserted-by":"crossref","first-page":"750","DOI":"10.3389\/fmicb.2020.00750","article-title":"Impact of soybean nodulation phenotypes and nitrogen fertilizer levels on the rhizosphere bacterial community","volume":"11","author":"Wang","year":"2020","journal-title":"Front Microbiol"},{"issue":"5","key":"10.1016\/j.jhazmat.2025.138658_bib83","doi-asserted-by":"crossref","first-page":"1130","DOI":"10.1038\/ismej.2016.191","article-title":"An acid-tolerant ammonia-oxidizing \u03b3-proteobacterium from soil","volume":"11","author":"Hayatsu","year":"2017","journal-title":"Isme J"},{"key":"10.1016\/j.jhazmat.2025.138658_bib84","doi-asserted-by":"crossref","DOI":"10.1016\/j.geoderma.2021.115102","article-title":"Changes in soil bacterial communities with increasing distance from maize roots affected by ammonium and nitrate additions","volume":"398","author":"Zhang","year":"2021","journal-title":"Geoderma"},{"issue":"23","key":"10.1016\/j.jhazmat.2025.138658_bib85","doi-asserted-by":"crossref","first-page":"10149","DOI":"10.1021\/acs.est.4c03677","article-title":"Significantly enhanced nitrate and phosphorus removal by pyrite\/sawdust composite-driven mixotrophic denitrification with boosted electron transfer: comprehensive evaluation of water-gas-biofilm phases during a long-term study","volume":"58","author":"Zhou","year":"2024","journal-title":"Environ Sci Technol"},{"issue":"2","key":"10.1016\/j.jhazmat.2025.138658_bib86","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1007\/s11274-017-2205-x","article-title":"Nitrogen fixing bacterial diversity in a tropical estuarine sediments","volume":"33","author":"Thajudeen","year":"2017","journal-title":"World J Micro Biot"},{"issue":"1-2","key":"10.1016\/j.jhazmat.2025.138658_bib87","doi-asserted-by":"crossref","first-page":"605","DOI":"10.1007\/s11104-023-05957-0","article-title":"Nitrate has a stronger rhizobacterial-based effect on rice growth and nitrogen use than ammonium in acidic paddy soil","volume":"487","author":"Xiao","year":"2023","journal-title":"Plant Soil"},{"key":"10.1016\/j.jhazmat.2025.138658_bib88","doi-asserted-by":"crossref","DOI":"10.1016\/j.biortech.2024.130501","article-title":"Prediction of heavy metal removal performance of sulfate-reducing bacteria using machine learning","volume":"397","author":"Xiong","year":"2024","journal-title":"Bioresour Technol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib89","doi-asserted-by":"crossref","DOI":"10.1016\/j.soilbio.2020.107873","article-title":"Temperatures beyond the community optimum promote the dominance of heat-adapted, fast growing and stress resistant bacteria in alpine soils","volume":"148","author":"Donhauser","year":"2020","journal-title":"Soil Biol Biochem"},{"key":"10.1016\/j.jhazmat.2025.138658_bib90","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2022.116493","article-title":"Changes in the composition of rhizosphere bacterial communities in response to soil types and acid rain","volume":"325","author":"Shu","year":"2023","journal-title":"J Environ Manag"},{"issue":"2","key":"10.1016\/j.jhazmat.2025.138658_bib91","doi-asserted-by":"crossref","first-page":"239","DOI":"10.3390\/jof9020239","article-title":"Fungi that promote plant growth in the rhizosphere boost crop growth","volume":"9","author":"Adedayo","year":"2023","journal-title":"J Fungi"},{"issue":"4","key":"10.1016\/j.jhazmat.2025.138658_bib92","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1007\/s00374-020-01463-y","article-title":"Everything you must know about Azospirillum and its impact on agriculture and beyond","volume":"56","author":"Cassan","year":"2020","journal-title":"Biol Fert Soils"},{"issue":"11","key":"10.1016\/j.jhazmat.2025.138658_bib93","doi-asserted-by":"crossref","first-page":"2982","DOI":"10.1021\/acssynbio.1c00287","article-title":"Improved Stability of Engineered Ammonia Production in the Plant-Symbiont","volume":"10","author":"Schnabel","year":"2021","journal-title":"Acs Synth Biol"},{"issue":"5","key":"10.1016\/j.jhazmat.2025.138658_bib94","doi-asserted-by":"crossref","first-page":"345","DOI":"10.1016\/j.enzmictec.2013.07.007","article-title":"Antioxidant defense system responses and role of nitrate reductase in the redox balance maintenance in Bradyrhizobium japonicum strains exposed to cadmium","volume":"53","author":"Bianucci","year":"2013","journal-title":"Enzym Micro Tech"},{"issue":"8","key":"10.1016\/j.jhazmat.2025.138658_bib95","doi-asserted-by":"crossref","first-page":"1518","DOI":"10.3390\/agronomy11081518","article-title":"Metabolic Adjustment of Glycine max (L.) Merril in the Presence of Nitrate and Bradyrhizobium japonicum","volume":"11","author":"J\u00fanior","year":"2021","journal-title":"Agronomy"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib96","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1007\/s13213-014-0839-6","article-title":"Phosphate solubilization by stress-tolerant soil fungus Talaromyces funiculosus SLS8 isolated from the Neem rhizosphere","volume":"65","author":"Kanse","year":"2015","journal-title":"Ann Microbiol"},{"issue":"1","key":"10.1016\/j.jhazmat.2025.138658_bib97","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1186\/2191-0855-3-19","article-title":"Importance of the ammonia assimilation by Penicillium purpurogenum in amino derivative Monascus pigment, PP-V, production","volume":"3","author":"Arai","year":"2013","journal-title":"Amb Express"},{"key":"10.1016\/j.jhazmat.2025.138658_bib98","doi-asserted-by":"crossref","DOI":"10.1016\/j.pbi.2022.102227","article-title":"Plant secondary metabolites altering root microbiome composition and function","volume":"67","author":"Koprivova","year":"2022","journal-title":"Curr Opin Plant Biol"},{"key":"10.1016\/j.jhazmat.2025.138658_bib99","doi-asserted-by":"crossref","DOI":"10.1016\/j.jenvman.2023.118732","article-title":"Mitigation of heavy metal stress in the soil through optimized interaction between plants and microbes","volume":"345","author":"Narayanan","year":"2023","journal-title":"J Environ Manag"},{"key":"10.1016\/j.jhazmat.2025.138658_bib100","doi-asserted-by":"crossref","DOI":"10.1016\/j.scitotenv.2024.171278","article-title":"Bio-organic fertilizer facilitated phytoremediation of heavy metal(loid) s-contaminated saline soil by mediating the plant-soil-rhizomicrobiota interactions","volume":"922","author":"Liu","year":"2024","journal-title":"Sci Total Environ"}],"container-title":["Journal of Hazardous Materials"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0304389425015742?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0304389425015742?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,12,25]],"date-time":"2025-12-25T19:52:08Z","timestamp":1766692328000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0304389425015742"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,8]]},"references-count":100,"alternative-id":["S0304389425015742"],"URL":"https:\/\/doi.org\/10.1016\/j.jhazmat.2025.138658","relation":{},"ISSN":["0304-3894"],"issn-type":[{"value":"0304-3894","type":"print"}],"subject":[],"published":{"date-parts":[[2025,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Integrated multi-omics and DNA stable-isotope probing approaches to reveal soil-ryegrass response to ionic rare earth mineral ammonium-lead contamination","name":"articletitle","label":"Article Title"},{"value":"Journal of Hazardous Materials","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jhazmat.2025.138658","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"138658"}}