{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,11,6]],"date-time":"2026-11-06T15:59:44Z","timestamp":1793980784353,"version":"4.8.0"},"reference-count":25,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,1,1]],"date-time":"2025-01-01T00:00:00Z","timestamp":1735689600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,10,17]],"date-time":"2024-10-17T00:00:00Z","timestamp":1729123200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":["journalofhospitalinfection.com","clinicalkey.fr","clinicalkey.jp","clinicalkey.es","clinicalkey.com.au","clinicalkey.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Hospital Infection"],"published-print":{"date-parts":[[2025,1]]},"DOI":"10.1016\/j.jhin.2024.10.003","type":"journal-article","created":{"date-parts":[[2024,10,18]],"date-time":"2024-10-18T22:56:42Z","timestamp":1729292202000},"page":"115-122","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":7,"special_numbering":"C","title":["Genotyping of Candida tropicalis isolates uncovers nosocomial transmission of two lineages in Italian tertiary care hospital"],"prefix":"10.1016","volume":"155","author":[{"given":"B.","family":"Spruijtenburg","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E.","family":"De Carolis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"C.","family":"Magri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J.F.","family":"Meis","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M.","family":"Sanguinetti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"T.","family":"de Groot","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"E.F.J.","family":"Meijer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.jhin.2024.10.003_bib1","doi-asserted-by":"crossref","first-page":"1927","DOI":"10.3389\/fmicb.2017.01927","article-title":"An update on Candida tropicalis based on basic and clinical approaches","volume":"8","author":"Zuza-Alves","year":"2017","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jhin.2024.10.003_bib2","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1007\/s12281-023-00455-3","article-title":"Candidiasis and other emerging yeasts","volume":"17","author":"Sharma","year":"2023","journal-title":"Curr Fungal Infect Rep"},{"key":"10.1016\/j.jhin.2024.10.003_bib3","doi-asserted-by":"crossref","first-page":"8369","DOI":"10.1038\/s41467-023-43380-2","article-title":"Tandem gene duplications contributed to high-level azole resistance in a rapidly expanding Candida tropicalis population","volume":"14","author":"Fan","year":"2023","journal-title":"Nat Commun"},{"key":"10.1016\/j.jhin.2024.10.003_bib4","doi-asserted-by":"crossref","first-page":"766","DOI":"10.1093\/mmy\/myz124","article-title":"Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates","volume":"58","author":"Arastehfar","year":"2020","journal-title":"Med Mycol"},{"key":"10.1016\/j.jhin.2024.10.003_bib5","doi-asserted-by":"crossref","first-page":"326","DOI":"10.1111\/myc.13048","article-title":"Investigation of a healthcare-associated Candida tropicalis candidiasis cluster in a haematology unit and a systematic review of nosocomial outbreaks","volume":"63","author":"Barac","year":"2020","journal-title":"Mycoses"},{"key":"10.1016\/j.jhin.2024.10.003_bib6","first-page":"1059","article-title":"Outbreaks of fungal infections in hospitals: epidemiology, detection, and management","volume":"9","author":"Douglas","year":"2023","journal-title":"J\u00a0Fungi (Basel)"},{"key":"10.1016\/j.jhin.2024.10.003_bib7","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02388-23","article-title":"The Fourier-transform infrared spectroscopy-based method as a new typing tool for Candida parapsilosis clinical isolates","volume":"11","author":"De Carolis","year":"2023","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.jhin.2024.10.003_bib8","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s11046-024-00877-8","article-title":"Short tandem repeat genotyping of medically important fungi: a comprehensive review of a powerful tool with extensive future potential","volume":"189","author":"Spruijtenburg","year":"2024","journal-title":"Mycopathologia"},{"key":"10.1016\/j.jhin.2024.10.003_bib9","doi-asserted-by":"crossref","first-page":"1453","DOI":"10.1128\/JCM.03355-13","article-title":"Development and validation of an in-house database for matrix-assisted laser desorption ionization-time of flight mass spectrometry-based yeast identification using a fast protein extraction procedure","volume":"52","author":"De Carolis","year":"2014","journal-title":"J\u00a0Clin Microbiol"},{"key":"10.1016\/j.jhin.2024.10.003_bib10","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.04618-22","article-title":"Development and application of a short tandem repeat multiplex typing assay for Candida tropicalis","volume":"11","author":"Spruijtenburg","year":"2023","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.jhin.2024.10.003_bib11","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/j.jgar.2023.06.012","article-title":"Genotyping and susceptibility testing uncovers large azole-resistant Candida tropicalis clade in Alexandria, Egypt","volume":"34","author":"Spruijtenburg","year":"2023","journal-title":"J\u00a0Glob Antimicrob Resist"},{"key":"10.1016\/j.jhin.2024.10.003_bib12","series-title":"Reference method for broth dilution antifungal susceptibility testing of yeasts","year":"2017"},{"key":"10.1016\/j.jhin.2024.10.003_bib13","first-page":"100","article-title":"YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens","volume":"6","author":"Abbey","year":"2014","journal-title":"Genome Med"},{"key":"10.1016\/j.jhin.2024.10.003_bib14","first-page":"207","article-title":"Short tandem repeat genotyping and antifungal susceptibility testing of Latin American Candida tropicalis isolates","volume":"9","author":"Spruijtenburg","year":"2023","journal-title":"J\u00a0Fungi (Basel)"},{"key":"10.1016\/j.jhin.2024.10.003_bib15","doi-asserted-by":"crossref","first-page":"1994","DOI":"10.3389\/fmicb.2020.01994","article-title":"Phenotypic variability in a co-infection with three independent Candida parapsilosis lineages","volume":"11","author":"G\u00f3mez-Molero","year":"2020","journal-title":"Front Microbiol"},{"key":"10.1016\/j.jhin.2024.10.003_bib16","doi-asserted-by":"crossref","first-page":"1008","DOI":"10.1016\/j.ajic.2021.02.014","article-title":"A\u00a0multi-center outbreak of Candida tropicalis bloodstream infections associated with contaminated hemodialysis machine prime buckets","volume":"49","author":"Boyce","year":"2021","journal-title":"Am J Infect Control"},{"key":"10.1016\/j.jhin.2024.10.003_bib17","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.02645-22","article-title":"Optimization and validation of Candida auris short tandem repeat analysis","volume":"10","author":"de Groot","year":"2022","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.jhin.2024.10.003_bib18","doi-asserted-by":"crossref","first-page":"1079","DOI":"10.1111\/myc.13655","article-title":"Whole genome sequencing analysis demonstrates therapy-induced echinocandin resistance in Candida auris isolates","volume":"66","author":"Spruijtenburg","year":"2023","journal-title":"Mycoses"},{"key":"10.1016\/j.jhin.2024.10.003_bib19","article-title":"Genomic description of acquired fluconazole- and echinocandin-resistance in patients with serial Candida glabrata isolates","volume":"62","author":"Misas","year":"2024","journal-title":"J\u00a0Clin Microbiol"},{"key":"10.1016\/j.jhin.2024.10.003_bib20","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1186\/s12915-023-01608-z","article-title":"Evolution of loss of heterozygosity patterns in hybrid genomes of candida yeast pathogens","volume":"21","author":"Mix\u00e3o","year":"2023","journal-title":"BMC Biol"},{"key":"10.1016\/j.jhin.2024.10.003_bib21","doi-asserted-by":"crossref","first-page":"1525","DOI":"10.3390\/microorganisms11061525","article-title":"Application of novel short tandem repeat typing for Wickerhamomyces anomalus reveals simultaneous outbreaks within a single hospital","volume":"11","author":"Spruijtenburg","year":"2023","journal-title":"Microorganisms"},{"key":"10.1016\/j.jhin.2024.10.003_bib22","first-page":"146","article-title":"Evaluation of microsatellite typing, ITS sequencing, AFLP fingerprinting, MALDI-TOF MS, and Fourier-transform infrared spectroscopy analysis of Candida auris","volume":"6","author":"Vatanshenassan","year":"2020","journal-title":"J\u00a0Fungi (Basel)"},{"key":"10.1016\/j.jhin.2024.10.003_bib23","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2022.887754","article-title":"Surveillance diagnostic algorithm using real-time PCR assay and strain typing method development to assist with the control of C.\u00a0auris amid COVID-19 pandemic","volume":"12","author":"Contreras","year":"2022","journal-title":"Front Cell Infect Microbiol"},{"key":"10.1016\/j.jhin.2024.10.003_bib24","first-page":"428","article-title":"European candidaemia is characterzied by notable differential epidemiology and susceptibility pattern: results from the ECMM Candida III study","volume":"87","author":"Arendrup","year":"2024","journal-title":"J\u00a0Infect"},{"key":"10.1016\/j.jhin.2024.10.003_bib25","doi-asserted-by":"crossref","first-page":"2729","DOI":"10.1038\/s41467-021-22944-0","article-title":"Estimating COVID-19 mortality in Italy early in the COVID-19 pandemic","volume":"12","author":"Modi","year":"2021","journal-title":"Nat Commun"}],"container-title":["Journal of Hospital Infection"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0195670124003360?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0195670124003360?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T11:58:53Z","timestamp":1738411133000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0195670124003360"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,1]]},"references-count":25,"alternative-id":["S0195670124003360"],"URL":"https:\/\/doi.org\/10.1016\/j.jhin.2024.10.003","relation":{},"ISSN":["0195-6701"],"issn-type":[{"value":"0195-6701","type":"print"}],"subject":[],"published":{"date-parts":[[2025,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genotyping of Candida tropicalis isolates uncovers nosocomial transmission of two lineages in Italian tertiary care hospital","name":"articletitle","label":"Article Title"},{"value":"Journal of Hospital Infection","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jhin.2024.10.003","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Author(s). Published by Elsevier Ltd on behalf of The Healthcare Infection Society.","name":"copyright","label":"Copyright"}]}}