{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T01:15:36Z","timestamp":1778634936018,"version":"3.51.4"},"reference-count":51,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,11,1]],"date-time":"2024-11-01T00:00:00Z","timestamp":1730419200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,10,22]],"date-time":"2024-10-22T00:00:00Z","timestamp":1729555200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100008349","name":"Universit\u00e4t Duisburg-Essen","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100008349","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["426547801"],"award-info":[{"award-number":["426547801"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["CRC 1439\/1"],"award-info":[{"award-number":["CRC 1439\/1"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Invertebrate Pathology"],"published-print":{"date-parts":[[2024,11]]},"DOI":"10.1016\/j.jip.2024.108224","type":"journal-article","created":{"date-parts":[[2024,10,23]],"date-time":"2024-10-23T21:31:30Z","timestamp":1729719090000},"page":"108224","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"special_numbering":"C","title":["Metacollinia emscheri n. sp., a novel sanguicolous apostome ciliate of freshwater amphipods (Gammarus spp.)"],"prefix":"10.1016","volume":"207","author":[{"given":"Sebastian","family":"Prati","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sonja","family":"R\u00fcckert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel S.","family":"Grabner","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bernd","family":"Sures","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jamie","family":"Bojko","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.jip.2024.108224_b0005","doi-asserted-by":"crossref","first-page":"609","DOI":"10.1111\/j.1365-2761.1995.tb00365.x","article-title":"Development of a diagnostic test for Mikrocytos roughleyi, the aetiological agent of Australian winter mortality of the commercial rock oyster, Saccostrea commercialis (Iredale & Roughley)","volume":"18","author":"Adlard","year":"1995","journal-title":"J. Fish Dis."},{"key":"10.1016\/j.jip.2024.108224_b0010","doi-asserted-by":"crossref","first-page":"37","DOI":"10.3354\/dao03395","article-title":"Fluctuating asymmetry, parasitism and reproductive fitness in two species of gammarid crustacean","volume":"136","author":"Arundell","year":"2019","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0015","doi-asserted-by":"crossref","first-page":"51","DOI":"10.3354\/dao03416","article-title":"Podocotyle atomon (Trematoda: Digenea) impacts reproductive behaviour, survival and physiology in Gammarus zaddachi (Amphipoda)","volume":"136","author":"Arundell","year":"2019","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0020","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J. Comput. Biol."},{"key":"10.1016\/j.jip.2024.108224_b0025","doi-asserted-by":"crossref","first-page":"1403","DOI":"10.1111\/1755-0998.12399","article-title":"metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data","volume":"15","author":"Bengtsson-Palme","year":"2015","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.jip.2024.108224_b0030","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1186\/s13071-017-2108-6","article-title":"Parasites, pathogens and commensals in the \u201clow-impact\u201d non-native amphipod host Gammarus roeselii","volume":"10","author":"Bojko","year":"2017","journal-title":"Parasit. Vectors"},{"key":"10.1016\/j.jip.2024.108224_b0035","doi-asserted-by":"crossref","first-page":"3","DOI":"10.3354\/dao03321","article-title":"Pathogens and other symbionts of the Amphipoda: taxonomic diversity and pathological significance","volume":"136","author":"Bojko","year":"2019","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0040","doi-asserted-by":"crossref","first-page":"241","DOI":"10.3354\/dao02658","article-title":"Baseline histopathological survey of a recently invading island population of \u2018killer shrimp\u2019, Dikerogammarus villosus","volume":"106","author":"Bojko","year":"2013","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0045","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jip.2024.108224_b0050","doi-asserted-by":"crossref","first-page":"141","DOI":"10.3354\/dao001141","article-title":"Discovery of an apostome ciliate (Collinia beringensis n. sp.) endoparasitic in the Bering Sea euphausiid Thysanoessa inermis","volume":"1","author":"Capriulo","year":"1985","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0055","series-title":"Recherches sur les infusoires astomes: anatomie, biologie, ethologie parasitaire, syste\u00e9matique","author":"C\u00e9p\u00e8de","year":"1910"},{"key":"10.1016\/j.jip.2024.108224_b0060","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1016\/j.protis.2013.09.001","article-title":"Fusiforma themisticola n. gen., n. sp., a new genus and species of apostome ciliate infecting the Hyperiid amphipod Themisto libellula in the Canadian Beaufort Sea (Arctic Ocean), and establishment of the Pseudocolliniidae (Ciliophora, Apostomatia)","volume":"164","author":"Chantangsi","year":"2013","journal-title":"Protist"},{"key":"10.1016\/j.jip.2024.108224_b0065","doi-asserted-by":"crossref","first-page":"S23","DOI":"10.1017\/S003118200001698X","article-title":"Concomitant infections, parasites and immune responses","volume":"122","author":"Cox","year":"2001","journal-title":"Parasitology"},{"key":"10.1016\/j.jip.2024.108224_b0070","first-page":"61","article-title":"Etude de la tomitogen\u00e8se et de l\u2019ultrastructure de Collinia orchestiae, cili\u00e9 apostome sanguicole, endoparasite du crustac\u00e9 Orchestia gammarella Pallas","volume":"11","author":"De Puytorac","year":"1975","journal-title":"Protistologica"},{"key":"10.1016\/j.jip.2024.108224_b0075","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1051\/parasite\/1962373195","article-title":"La tomitog\u00e9n\u00e8se des Collinia cili\u00e9s apostomes sanguicoles endoparasites des crustac\u00e9s","volume":"37","author":"De Puytorac","year":"1962","journal-title":"Ann. Parasitol. Hum. Comp."},{"key":"10.1016\/j.jip.2024.108224_b0085","doi-asserted-by":"crossref","first-page":"877","DOI":"10.1016\/S0003-3472(05)80989-3","article-title":"Symmetrical assessment of female quality by male Gammarus pulex (Amphipoda) during struggles over precopula females","volume":"40","author":"Dick","year":"1990","journal-title":"Anim. Behav."},{"key":"10.1016\/j.jip.2024.108224_b0090","first-page":"294","article-title":"DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates","volume":"3","author":"Folmer","year":"1994","journal-title":"Mol Mar. Biol. Biotechnol."},{"key":"10.1016\/j.jip.2024.108224_b0095","doi-asserted-by":"crossref","first-page":"377","DOI":"10.2307\/3546505","article-title":"A perspective on leaf litter breakdown in streams","volume":"85","author":"Gessner","year":"1999","journal-title":"Oikos"},{"key":"10.1016\/j.jip.2024.108224_b0100","doi-asserted-by":"crossref","first-page":"2429","DOI":"10.3390\/w12092429","article-title":"The ecological importance of amphipod\u2013parasite associations for aquatic ecosystems","volume":"12","author":"Giari","year":"2020","journal-title":"Water"},{"key":"10.1016\/j.jip.2024.108224_b0105","doi-asserted-by":"crossref","first-page":"15","DOI":"10.37543\/oceanides.v32i2.204","article-title":"Pseudocollinia histophagous ciliates infect krill in the Pacific and Atlantic Oceans and possibly worldwide","volume":"32","author":"G\u00f3mez-Guti\u00e9rrez","year":"2017","journal-title":"CICIMAR Oce\u00e1nides"},{"key":"10.1016\/j.jip.2024.108224_b0110","doi-asserted-by":"crossref","first-page":"57","DOI":"10.3354\/dao02450","article-title":"Pseudocollinia brintoni gen. nov., sp. nov. (Apostomatida: Colliniidae), a parasitoid ciliate infecting the euphausiid Nyctiphanes simplex","volume":"99","author":"G\u00f3mez-Guti\u00e9rrez","year":"2012","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0115","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1186\/s13071-015-1036-6","article-title":"Invaders, natives and their enemies: distribution patterns of amphipods and their microsporidian parasites in the Ruhr Metropolis","volume":"8","author":"Grabner","year":"2015","journal-title":"Germany. Parasit. Vectors"},{"key":"10.1016\/j.jip.2024.108224_b0120","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"Gurevich","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jip.2024.108224_b0125","unstructured":"Jankowski, A., 2007. Phylum Ciliophora Doflein, 1901, in: Alimov, A. F. (Ed.), Protista, Part 2, Handbook of Zoology. Russian Academy of Science, Zoological Institute, St. Petersburg, pp. 415\u2013993."},{"key":"10.1016\/j.jip.2024.108224_b0130","doi-asserted-by":"crossref","first-page":"705","DOI":"10.1111\/jeu.12515","article-title":"An optimized protocol of protargol staining for ciliated protozoa","volume":"65","author":"Ji","year":"2018","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.jip.2024.108224_b0135","doi-asserted-by":"crossref","first-page":"1160","DOI":"10.1093\/bib\/bbx108","article-title":"MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization","volume":"20","author":"Katoh","year":"2019","journal-title":"Brief. Bioinformatics"},{"key":"10.1016\/j.jip.2024.108224_b0140","article-title":"Improvement of silver impregnation technique using in situ synthesized protargol","volume":"56","author":"Kurilov","year":"2017","journal-title":"Acta Protozool."},{"key":"10.1016\/j.jip.2024.108224_b0145","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2023.1222186","article-title":"Mitochondrial genome annotation with MFannot: a critical analysis of gene identification and gene model prediction","volume":"14","author":"Lang","year":"2023","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.jip.2024.108224_b0150","doi-asserted-by":"crossref","unstructured":"Lynn , D.H. (Ed.), 2008. The ciliated protozoa: characterization, classification, and guide to the literature , third ed. Springer , Netherlands, Dordrecht . doi: 10.1007\/978-1-4020-8239-9_17Lynn, D.H. (Ed.), 2008. The ciliated protozoa: characterization, classification, and guide to the literature, third ed. Springer Netherlands, Dordrecht. doi:10.1007\/978-1-4020-8239-9_17.","DOI":"10.1007\/978-1-4020-8239-9_17"},{"key":"10.1016\/j.jip.2024.108224_b0155","doi-asserted-by":"crossref","first-page":"89","DOI":"10.3354\/dao02796","article-title":"Ciliate species diversity and host-parasitoid codiversification in Pseudocollinia infecting krill, with description of Pseudocollinia similis sp. nov","volume":"112","author":"Lynn","year":"2014","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0160","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1111\/jeu.12638","article-title":"The sanguicolous apostome Metacollinia luciensis Jankowski 1980 (Colliniidae, Apostomatia, Ciliophora) is not closely related to other sanguicolous apostomes","volume":"66","author":"Lynn","year":"2019","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.jip.2024.108224_b0165","first-page":"349","article-title":"The trophic ecology of freshwater Gammarus spp. (Crustacea: Amphipoda): problems and perspectives concerning the functional feeding group concept","volume":"72","author":"Macneil","year":"1997","journal-title":"Biol. Rev. Cambridge Philos. Soc."},{"key":"10.1016\/j.jip.2024.108224_b0170","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1111\/j.1469-185X.1999.tb00035.x","article-title":"The dynamics of predation on Gammarus spp. (Crustacea: Amphipoda)","volume":"74","author":"Macneil","year":"1999","journal-title":"Biol. Rev."},{"key":"10.1016\/j.jip.2024.108224_b0175","doi-asserted-by":"crossref","first-page":"795","DOI":"10.1016\/S0020-7519(03)00110-3","article-title":"Parasite transmission and cannibalism in an amphipod (Crustacea)","volume":"33","author":"MacNeil","year":"2003","journal-title":"Int. J. Parasitol."},{"key":"10.1016\/j.jip.2024.108224_b0180","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1007\/s10750-007-0731-5","article-title":"Habitat-mediated cannibalism and microhabitat restriction in the stream invertebrate Gammarus pulex","volume":"589","author":"McGrath","year":"2007","journal-title":"Hydrobiologia"},{"key":"10.1016\/j.jip.2024.108224_bib256","doi-asserted-by":"crossref","unstructured":"McKinley, K., Tsaousis, A. D., R\u00fcckert, S., 2024. Description and prevalence of gregarines infecting the amphipod Gammarus pulex, in the Water of Leith, Scotland, UK. Eur. J. Protistol. 94, 126084. doi:10.1016\/j.ejop.2024.126084.","DOI":"10.1016\/j.ejop.2024.126084"},{"key":"10.1016\/j.jip.2024.108224_b0185","doi-asserted-by":"crossref","DOI":"10.1111\/jeu.12847","article-title":"Lynnia grapsolytica n. gen., n. sp. (Ciliophora: Apostomatida: Colliniidae), a deadly blood parasite of crabs with a novel pseudocytopharynx","volume":"68","author":"Metz","year":"2021","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.jip.2024.108224_b0190","doi-asserted-by":"crossref","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: New models and efficient methods for phylogenetic inference in the genomic era","volume":"37","author":"Minh","year":"2020","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.jip.2024.108224_b0195","first-page":"333","article-title":"Sur un infusoire du genre Balantidium, parasite du tube digestif d\u2019Orchestia littorea Mont","volume":"84","author":"Poisson","year":"1921","journal-title":"Compt. Rend. Seances Soc. Biol. Fil."},{"key":"10.1016\/j.jip.2024.108224_b0200","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1111\/j.1095-8649.2000.tb02090.x","article-title":"Variation in the intraspecific relationship between fish length and intensity of parasitic infection: biological and statistical causes","volume":"56","author":"Poulin","year":"2000","journal-title":"J. Fish Biol."},{"key":"10.1016\/j.jip.2024.108224_b0205","doi-asserted-by":"crossref","first-page":"973","DOI":"10.1017\/S0031182022000452","article-title":"Generalist parasites persist in degraded environments: a lesson learned from microsporidian diversity in amphipods","volume":"149","author":"Prati","year":"2022","journal-title":"Parasitology"},{"key":"10.1016\/j.jip.2024.108224_b0210","doi-asserted-by":"crossref","first-page":"9474","DOI":"10.1038\/s41598-023-36630-2","article-title":"Possible seasonal and diurnal modulation of Gammarus pulex (Crustacea, Amphipoda) drift by microsporidian parasites","volume":"13","author":"Prati","year":"2023","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jip.2024.108224_b0215","doi-asserted-by":"crossref","first-page":"1339","DOI":"10.1007\/s00300-010-0821-0","article-title":"Parasitic infection of the hyperiid amphipod Themisto libellula in the Canadian Beaufort Sea (Arctic Ocean), with a description of Ganymedes themistos sp. n. (Apicomplexa, Eugregarinorida)","volume":"33","author":"Prokopowicz","year":"2010","journal-title":"Polar Biol."},{"key":"10.1016\/j.jip.2024.108224_b0220","article-title":"An improved quantitative protargol stain for ciliates and other planktonic protists","volume":"339\u2013347","author":"Skibbe","year":"1994","journal-title":"Arch. Hydrobiol."},{"key":"10.1016\/j.jip.2024.108224_b0225","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1186\/1756-3305-3-56","article-title":"Larval trematode communities in Radix auricularia and Lymnaea stagnalis in a reservoir system of the Ruhr River","volume":"3","author":"Sold\u00e1nov\u00e1","year":"2010","journal-title":"Parasit. Vectors"},{"key":"10.1016\/j.jip.2024.108224_b0230","doi-asserted-by":"crossref","first-page":"3022","DOI":"10.1093\/molbev\/msab120","article-title":"MEGA11: Molecular Evolutionary Genetics Analysis Version 11","volume":"38","author":"Tamura","year":"2021","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.jip.2024.108224_b0235","doi-asserted-by":"crossref","first-page":"102","DOI":"10.1126\/science.277.5322.102","article-title":"Multiple trophic levels of a forest stream linked to terrestrial litter inputs","volume":"277","author":"Wallace","year":"1997","journal-title":"Science"},{"key":"10.1016\/j.jip.2024.108224_b0240","doi-asserted-by":"crossref","first-page":"47","DOI":"10.3354\/dao03658","article-title":"Histopathological survey for parasite groups in Gammarus varsoviensis (Amphipoda)","volume":"149","author":"Warren","year":"2022","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.jip.2024.108224_b0245","doi-asserted-by":"crossref","DOI":"10.1016\/j.jip.2023.107970","article-title":"Histopathological screening of Pontogammarus robustoides (Amphipoda), an invader on route to the United Kingdom","volume":"200","author":"Warren","year":"2023","journal-title":"J. Invertebr. Pathol."},{"key":"10.1016\/j.jip.2024.108224_b0250","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1016\/j.limno.2016.01.005","article-title":"Shared microsporidian profiles between an obligate (Niphargus) and facultative subterranean amphipod population (Gammarus) at sympatry provide indications for underground transmission pathways","volume":"58","author":"Weigand","year":"2016","journal-title":"Limnologica"},{"key":"10.1016\/j.jip.2024.108224_b0255","doi-asserted-by":"crossref","first-page":"1570","DOI":"10.1093\/infdis\/168.6.1570","article-title":"Small subunit rRNA sequence of Enterocytozoon bieneusi and its potential diagnostic role with use of the polymerase chain reaction","volume":"168","author":"Zhu","year":"1993","journal-title":"J. Infect. Dis."}],"container-title":["Journal of Invertebrate Pathology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022201124001678?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022201124001678?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T01:01:27Z","timestamp":1778634087000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022201124001678"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,11]]},"references-count":51,"alternative-id":["S0022201124001678"],"URL":"https:\/\/doi.org\/10.1016\/j.jip.2024.108224","relation":{},"ISSN":["0022-2011"],"issn-type":[{"value":"0022-2011","type":"print"}],"subject":[],"published":{"date-parts":[[2024,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Metacollinia emscheri n. sp., a novel sanguicolous apostome ciliate of freshwater amphipods (Gammarus spp.)","name":"articletitle","label":"Article Title"},{"value":"Journal of Invertebrate Pathology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jip.2024.108224","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Author(s). Published by Elsevier Inc.","name":"copyright","label":"Copyright"}],"article-number":"108224"}}