{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,22]],"date-time":"2025-10-22T20:54:52Z","timestamp":1761166492447,"version":"build-2065373602"},"reference-count":83,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2019,5,1]],"date-time":"2019-05-01T00:00:00Z","timestamp":1556668800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2019,5,1]],"date-time":"2019-05-01T00:00:00Z","timestamp":1556668800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Molecular Graphics and Modelling"],"published-print":{"date-parts":[[2019,5]]},"DOI":"10.1016\/j.jmgm.2019.01.018","type":"journal-article","created":{"date-parts":[[2019,2,1]],"date-time":"2019-02-01T07:49:34Z","timestamp":1549007374000},"page":"209-220","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":16,"special_numbering":"C","title":["Computational approach to understand molecular mechanism involved in BPH resistance in Bt- rice plant"],"prefix":"10.1016","volume":"88","author":[{"given":"Manoj Kumar","family":"Gupta","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ramakrishna","family":"Vadde","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gayatri","family":"Gouda","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ravindra","family":"Donde","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jitendra","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lambodar","family":"Behera","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.jmgm.2019.01.018_bib1","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1093\/mp\/sst030","article-title":"Towards understanding of molecular interactions between rice and the brown planthopper","volume":"6","author":"Cheng","year":"2013","journal-title":"Mol. Plant"},{"key":"10.1016\/j.jmgm.2019.01.018_bib2","doi-asserted-by":"crossref","first-page":"3921","DOI":"10.3390\/ijms14023921","article-title":"Proteome analysis of rice (Oryza sativa L.) mutants reveals differentially induced proteins during brown planthopper (Nilaparvata lugens) infestation","volume":"14","author":"Sangha","year":"2013","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib3","doi-asserted-by":"crossref","DOI":"10.1038\/srep05872","article-title":"Map-based cloning and characterization of a brown planthopper resistance gene BPH26 from Oryza sativa L. ssp. indica cultivar ADR52","volume":"4","author":"Tamura","year":"2014","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jmgm.2019.01.018_bib4","doi-asserted-by":"crossref","first-page":"34376","DOI":"10.1038\/srep34376","article-title":"Map-based cloning and characterization of the BPH18 gene from wild rice conferring resistance to brown planthopper (BPH) insect pest","volume":"6","author":"Ji","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jmgm.2019.01.018_bib5","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1007\/s12284-010-9050-y","article-title":"Current status of Brown planthopper (BPH) resistance and genetics","volume":"3","author":"Jena","year":"2010","journal-title":"Rice"},{"key":"10.1016\/j.jmgm.2019.01.018_bib6","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1080\/07352689.2012.735986","article-title":"Rice resistance to planthoppers and leafhoppers","volume":"32","author":"Fujita","year":"2013","journal-title":"Crit. Rev. Plant Sci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib7","doi-asserted-by":"crossref","DOI":"10.1038\/srep37645","article-title":"Bph32, a novel gene encoding an unknown SCR domain-containing protein, confers resistance against the brown planthopper in rice","volume":"6","author":"Ren","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jmgm.2019.01.018_bib8","first-page":"41","volume":"vol. 10","author":"Prahalada","year":"2017"},{"key":"10.1016\/j.jmgm.2019.01.018_bib9","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1007\/s10681-016-1786-z","article-title":"Mapping of brown planthopper [<Emphasis Type=\"Italic\">Nilaparvata lugens<\/Emphasis> (St\u00e5l)] resistance gene (<Emphasis Type=\"Italic\">bph<\/Emphasis>5) in rice (<Emphasis Type=\"Italic\">Oryza sativa<\/Emphasis> L.)","volume":"213","author":"Deen","year":"2017","journal-title":"Euphytica"},{"key":"10.1016\/j.jmgm.2019.01.018_bib10","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1007\/s10681-017-1835-2","article-title":"Identification of novel quantitative trait loci associated with brown planthopper resistance in the rice landrace Salkathi","volume":"213","author":"Mohanty","year":"2017","journal-title":"Euphytica"},{"key":"10.1016\/j.jmgm.2019.01.018_bib11","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1603\/EN12055","article-title":"Impact of six transgenic Bacillus thuringiensis rice lines on four nontarget thrips species attacking rice panicles in the paddy field","volume":"42","author":"Akhtar","year":"2013","journal-title":"Environ. Entomol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib12","doi-asserted-by":"crossref","first-page":"335","DOI":"10.4001\/003.025.0335","article-title":"Efficacy of Bacillus thuringiensis sprays and cotton cultivars expressing Cry proteins in the control of Earias biplaga (Walker)(Lepidoptera: Noctuidae)","volume":"25","author":"Fourie","year":"2017","journal-title":"Afr. Entomol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib13","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.jip.2016.07.018","article-title":"Specificity determinants for Cry insecticidal proteins: insights from their mode of action","volume":"142","author":"Jurat-Fuentes","year":"2017","journal-title":"J.\u00a0Invertebr. Pathol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib14","doi-asserted-by":"crossref","first-page":"2048","DOI":"10.1021\/acs.jafc.6b05769","article-title":"Possible insecticidal mechanisms mediated by immune-response-related cry-binding proteins in the midgut juice of plutella xylostella and spodoptera exigua","volume":"65","author":"Lu","year":"2017","journal-title":"J.\u00a0Agric. Food Chem."},{"key":"10.1016\/j.jmgm.2019.01.018_bib15","series-title":"Rice Genet. II 2 Parts","first-page":"605","article-title":"Transgenic rice plants produced by direct uptake of the \u03b4-endotoxin protein gene from Bacillus thuringiensis into rice protoplasts","author":"Yang","year":"1991"},{"key":"10.1016\/j.jmgm.2019.01.018_bib16","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2015.01181","article-title":"Comparing gene expression profiles between Bt and non-Bt rice in response to brown planthopper infestation","volume":"6","author":"Wang","year":"2015","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib17","doi-asserted-by":"crossref","first-page":"1730","DOI":"10.1603\/EC10389","article-title":"Resistance performances of transgenic bt rice lines T(2A)-1 and T1c-19 against Cnaphalocrocis medinalis (Lepidoptera: Pyralidae)","volume":"104","author":"Zheng","year":"2011","journal-title":"J.\u00a0Econ. Entomol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib18","doi-asserted-by":"crossref","first-page":"1164","DOI":"10.3390\/molecules22071164","article-title":"Extraction of pathogenesis-related proteins and phenolics in Sauvignon Blanc as affected by grape harvesting and processing conditions","volume":"22","author":"Tian","year":"2017","journal-title":"Molecules"},{"key":"10.1016\/j.jmgm.2019.01.018_bib19","doi-asserted-by":"crossref","first-page":"715","DOI":"10.1603\/EN09095","article-title":"Impacts of six bt rice lines on nontarget rice feeding thrips under laboratory and field conditions","volume":"39","author":"Akhtar","year":"2010","journal-title":"Environ. Entomol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib20","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1007\/s11248-011-9530-x","article-title":"Bt rice expressing Cry1Ab does not stimulate an outbreak of its non-target herbivore, Nilaparvata lugens","volume":"21","author":"Chen","year":"2012","journal-title":"Transgenic Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib21","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/j.gene.2016.10.032","article-title":"In silico analysis of differential gene expressions in biliary stricture and hepatic carcinoma","volume":"597","author":"Gupta","year":"2017","journal-title":"Gene"},{"key":"10.1016\/j.jmgm.2019.01.018_bib22","doi-asserted-by":"crossref","first-page":"131","DOI":"10.4103\/0972-9062.211687","article-title":"Identification and characterization of differentially expressed genes from human microglial cell samples infected with Japanese encephalitis virus","volume":"54","author":"Gupta","year":"2017","journal-title":"J.\u00a0Vector Borne Dis."},{"key":"10.1016\/j.jmgm.2019.01.018_bib23","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1016\/S1046-2023(03)00155-5","article-title":"Normalization of cDNA microarray data","volume":"31","author":"Smyth","year":"2003","journal-title":"Methods"},{"key":"10.1016\/j.jmgm.2019.01.018_bib24","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1186\/1471-2105-7-469","article-title":"Evaluating different methods of microarray data normalization","volume":"7","author":"Fujita","year":"2006","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.jmgm.2019.01.018_bib25","doi-asserted-by":"crossref","DOI":"10.2202\/1544-6115.1287","article-title":"A\u00a0comparison of normalization techniques for microRNA microarray data","volume":"7","author":"Rao","year":"2008","journal-title":"Stat. Appl. Genet. Mol. Biol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib26","doi-asserted-by":"crossref","first-page":"819","DOI":"10.1089\/10665270050514954","article-title":"Analysis of variance for gene expression microarray data","volume":"7","author":"Kerr","year":"2000","journal-title":"J.\u00a0Comput. Biol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib27","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1017\/S0016672301005055","article-title":"Statistical design and the analysis of gene expression microarray data","volume":"77","author":"Kerr","year":"2001","journal-title":"Genet. Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib28","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/30.4.e15","article-title":"Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation","volume":"30","author":"Yang","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib29","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1016\/j.tig.2003.09.015","article-title":"Fundamentals of cDNA microarray data analysis","volume":"19","author":"Leung","year":"2003","journal-title":"Trends Genet."},{"key":"10.1016\/j.jmgm.2019.01.018_bib30","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1038\/ng1032","article-title":"Microarray data normalization and transformation","volume":"32","author":"Quackenbush","year":"2002","journal-title":"Nat. Genet."},{"key":"10.1016\/j.jmgm.2019.01.018_bib31","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/30.4.e15","article-title":"Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation","volume":"30","author":"Yang","year":"2002","journal-title":"Nucleic Acids Res."},{"year":"2008","series-title":"Methods in Microarray Normalization","author":"Stafford","key":"10.1016\/j.jmgm.2019.01.018_bib32"},{"key":"10.1016\/j.jmgm.2019.01.018_bib33","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1186\/1471-2105-7-137","article-title":"How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results","volume":"7","author":"Millenaar","year":"2006","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.jmgm.2019.01.018_bib34","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/bioinformatics\/btg405","article-title":"affy\u2014analysis of Affymetrix GeneChip data at the probe level","volume":"20","author":"Gautier","year":"2004","journal-title":"Bioinformatics"},{"key":"10.1016\/j.jmgm.2019.01.018_bib35","series-title":"R: A Language and Environment for Statistical Computing","first-page":"2014","author":"Team","year":"2014"},{"key":"10.1016\/j.jmgm.2019.01.018_bib36","series-title":"Bioinforma. Comput. Biol. Solut. Using R Bioconductor","first-page":"397","article-title":"Limma: linear models for microarray data","author":"Smyth","year":"2005"},{"key":"10.1016\/j.jmgm.2019.01.018_bib37","doi-asserted-by":"crossref","first-page":"D362","DOI":"10.1093\/nar\/gkw937","article-title":"The STRING database in 2017: quality-controlled protein\u2013protein association networks, made broadly accessible","volume":"45","author":"Szklarczyk","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib38","doi-asserted-by":"crossref","first-page":"4947","DOI":"10.1242\/jcs.02714","article-title":"Scale-free networks in cell biology","volume":"118","author":"Albert","year":"2005","journal-title":"J.\u00a0Cell Sci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib39","doi-asserted-by":"crossref","first-page":"2674","DOI":"10.4238\/2014.April.8.10","article-title":"Analysis of differentially expressed genes in malignant biliary strictures","volume":"13","author":"Qi","year":"2014","journal-title":"Genet. Mol. Res. GMR."},{"key":"10.1016\/j.jmgm.2019.01.018_bib40","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J.\u00a0Mol. Biol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib41","doi-asserted-by":"crossref","first-page":"W174","DOI":"10.1093\/nar\/gkv342","article-title":"I-TASSER server: new development for protein structure and function predictions","volume":"43","author":"Yang","year":"2015","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib42","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1107\/S0021889892009944","article-title":"PROCHECK: a program to check the stereochemical quality of protein structures","volume":"26","author":"Laskowski","year":"1993","journal-title":"J.\u00a0Appl. Crystallogr."},{"key":"10.1016\/j.jmgm.2019.01.018_bib43","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1107\/S0907444909042073","article-title":"MolProbity: all-atom structure validation for macromolecular crystallography","volume":"66","author":"Chen","year":"2010","journal-title":"Acta Crystallogr. D Biol. Crystallogr."},{"key":"10.1016\/j.jmgm.2019.01.018_bib44","doi-asserted-by":"crossref","first-page":"W407","DOI":"10.1093\/nar\/gkm290","article-title":"ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins","volume":"35","author":"Wiederstein","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib45","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1016\/j.softx.2015.06.001","article-title":"GROMACS: high performance molecular simulations through multi-level parallelism from laptops to supercomputers","volume":"1\u20132","author":"Abraham","year":"2015","journal-title":"Software"},{"key":"10.1016\/j.jmgm.2019.01.018_bib46","doi-asserted-by":"crossref","first-page":"2169","DOI":"10.1002\/jcc.21507","article-title":"g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation","volume":"31","author":"Wolf","year":"2010","journal-title":"J.\u00a0Comput. Chem."},{"key":"10.1016\/j.jmgm.2019.01.018_bib47","doi-asserted-by":"crossref","first-page":"2002","DOI":"10.1016\/S0006-3495(97)78845-3","article-title":"Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature","volume":"72","author":"Berger","year":"1997","journal-title":"Biophys. J."},{"year":"2015","series-title":"GROMACS Tutorial: KALP15 in DPPC","author":"Lemkul","key":"10.1016\/j.jmgm.2019.01.018_bib48"},{"key":"10.1016\/j.jmgm.2019.01.018_bib49","doi-asserted-by":"crossref","first-page":"34984","DOI":"10.1038\/srep34984","article-title":"Structural insights into conformational stability of both wild-type and mutant EZH2 receptor","volume":"6","author":"Aier","year":"2016","journal-title":"Sci. Rep."},{"year":"2005","series-title":"XMGRACE, version 5.1.19","author":"Turner","key":"10.1016\/j.jmgm.2019.01.018_bib50"},{"year":"2004","series-title":"ArgusLab 4.0. 1","author":"Thompson","key":"10.1016\/j.jmgm.2019.01.018_bib51"},{"key":"10.1016\/j.jmgm.2019.01.018_bib52","doi-asserted-by":"crossref","first-page":"3352","DOI":"10.1093\/nar\/gkg512","article-title":"CASTp: computed Atlas of surface Topography of proteins","volume":"31","author":"Binkowski","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jmgm.2019.01.018_bib53","doi-asserted-by":"crossref","first-page":"2785","DOI":"10.1002\/jcc.21256","article-title":"AutoDock4 and AutoDockTools4: automated docking with selective receptor flexibility","volume":"30","author":"Morris","year":"2009","journal-title":"J.\u00a0Comput. Chem."},{"key":"10.1016\/j.jmgm.2019.01.018_bib54","first-page":"1","article-title":"Insights into the structure\u2013function relationship of brown plant hopper resistance protein, Bph14 of rice plant: a computational structural biology approach","volume":"0","author":"Gupta","year":"2018","journal-title":"J.\u00a0Biomol. Struct. Dyn."},{"key":"10.1016\/j.jmgm.2019.01.018_bib55","first-page":"1","article-title":"In silico identification of natural product inhibitors for \u03b3-secretase activating protein, a therapeutic target for Alzheimer's disease","author":"Gupta","year":"2018","journal-title":"J.\u00a0Cell. Biochem."},{"year":"2017","series-title":"Discovery Studio Visualizer, San Diego CA USA","author":"BIOVIA","key":"10.1016\/j.jmgm.2019.01.018_bib56"},{"key":"10.1016\/j.jmgm.2019.01.018_bib57","doi-asserted-by":"crossref","first-page":"1355","DOI":"10.1107\/S0907444904011679","article-title":"PRODRG: a tool for high-throughput crystallography of protein\u2013ligand complexes","volume":"60","author":"Sch\u00fcttelkopf","year":"2004","journal-title":"Acta Crystallogr. D Biol. Crystallogr."},{"key":"10.1016\/j.jmgm.2019.01.018_bib58","doi-asserted-by":"crossref","first-page":"12439","DOI":"10.1038\/s41598-017-12031-0","article-title":"Understanding the differences of the ligand binding\/unbinding pathways between phosphorylated and non-phosphorylated ARH1 using molecular dynamics simulations","volume":"7","author":"Zhu","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.jmgm.2019.01.018_bib59","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1016\/j.gene.2017.10.047","article-title":"Wild-type catalase peroxidase vs G279D mutant type: molecular basis of Isoniazid drug resistance in Mycobacterium tuberculosis","volume":"641","author":"Singh","year":"2018","journal-title":"Gene"},{"key":"10.1016\/j.jmgm.2019.01.018_bib60","article-title":"Recent developments and applications of the MMPBSA method","volume":"4","author":"Wang","year":"2017","journal-title":"Front. Mol. Biosci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib61","doi-asserted-by":"crossref","first-page":"482","DOI":"10.1104\/pp.16.00739","article-title":"Rice cellulose SynthaseA8 plant-conserved region is a coiled-coil at the catalytic core entrance","volume":"173","author":"Rushton","year":"2017","journal-title":"Plant Physiol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib62","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1111\/jipb.12637","article-title":"Cellulose synthase \u2018class specific regions\u2019 are intrinsically disordered and functionally undifferentiated","volume":"60","author":"Scavuzzo-Duggan","year":"2018","journal-title":"J.\u00a0Integr. Plant Biol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib63","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/0263-7855(96)00018-5","article-title":"VMD: visual molecular dynamics","volume":"14","author":"Humphrey","year":"1996","journal-title":"J.\u00a0Mol. Graph."},{"key":"10.1016\/j.jmgm.2019.01.018_bib64","doi-asserted-by":"crossref","first-page":"966","DOI":"10.1080\/07391102.2017.1305295","article-title":"In silico prediction of drug resistance due to S247R mutation of Influenza H1N1 neuraminidase protein","volume":"36","author":"Mandal","year":"2018","journal-title":"J.\u00a0Biomol. Struct. Dyn."},{"key":"10.1016\/j.jmgm.2019.01.018_bib65","first-page":"8","article-title":"Using autodock for ligand-receptor docking","author":"Morris","year":"2008","journal-title":"Curr. Protoc. Bioinforma."},{"key":"10.1016\/j.jmgm.2019.01.018_bib66","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1016\/j.sbi.2008.01.004","article-title":"Flexible ligand docking to multiple receptor conformations: a practical alternative","volume":"18","author":"Totrov","year":"2008","journal-title":"Curr. Opin. Struct. Biol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib67","series-title":"Curr. Protoc. Bioinforma.","article-title":"Analyzing and visualizing expression data with spotfire","author":"Kaushal","year":"2004"},{"key":"10.1016\/j.jmgm.2019.01.018_bib68","doi-asserted-by":"crossref","first-page":"282","DOI":"10.1186\/1471-2229-10-282","article-title":"Expression profiling and integrative analysis of the CESA\/CSL superfamily in rice","volume":"10","author":"Wang","year":"2010","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib69","doi-asserted-by":"crossref","first-page":"22163","DOI":"10.1073\/pnas.0912139106","article-title":"Identification and characterization of Bph14, a gene conferring resistance to brown planthopper in rice","volume":"106","author":"Du","year":"2009","journal-title":"Proc. Natl. Acad. Sci. Unit. States Am."},{"key":"10.1016\/j.jmgm.2019.01.018_bib70","doi-asserted-by":"crossref","first-page":"78","DOI":"10.1111\/1744-7917.12178","article-title":"Comparison of three transgenic Bt rice lines for insecticidal protein expression and resistance against a target pest, Chilo suppressalis (Lepidoptera: crambidae)","volume":"23","author":"Wang","year":"2016","journal-title":"Insect Sci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib71","doi-asserted-by":"crossref","first-page":"369","DOI":"10.1023\/A:1027336605479","article-title":"New insight into the mechanism of cellulose and callose biosynthesis: proteases may regulate callose biosynthesis upon wounding","volume":"10","author":"Nakashima","year":"2003","journal-title":"Cellulose"},{"key":"10.1016\/j.jmgm.2019.01.018_bib72","doi-asserted-by":"crossref","first-page":"9353","DOI":"10.1073\/pnas.92.20.9353","article-title":"A\u00a0membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants","volume":"92","author":"Amor","year":"1995","journal-title":"Proc. Natl. Acad. Sci. Unit. States Am."},{"key":"10.1016\/j.jmgm.2019.01.018_bib73","doi-asserted-by":"crossref","first-page":"49","DOI":"10.3103\/S0095452715010090","article-title":"Callose: localization, functions, and synthesis in plant cells","volume":"49","author":"Nedukha","year":"2015","journal-title":"Cytol. Genet."},{"key":"10.1016\/j.jmgm.2019.01.018_bib74","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1007\/BF02493305","article-title":"Orientation of microfibrils and microtubules in cortical parenchyma cells of poplar during elongation growth","volume":"89","author":"Itoh","year":"1976","journal-title":"Bot. Mag. Shokubutsu-Gaku-Zasshi."},{"key":"10.1016\/j.jmgm.2019.01.018_bib75","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1007\/BF02506253","article-title":"Cell expansion and microfibril deposition inClosterium ehrenbergii","volume":"92","author":"Hogetsu","year":"1979","journal-title":"Bot. Mag. Shokubutsu-Gaku-Zasshi."},{"key":"10.1016\/j.jmgm.2019.01.018_bib76","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2014.00178","article-title":"The role of the cell wall in plant immunity","volume":"5","author":"Malinovsky","year":"2014","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.jmgm.2019.01.018_bib77","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1111\/j.1469-8137.2008.02385.x","article-title":"Cellulose biosynthesis and deposition in higher plants","volume":"178","author":"Taylor","year":"2008","journal-title":"New Phytol."},{"year":"2014","series-title":"Cellulose Synthesis and its Regulation","author":"Li","key":"10.1016\/j.jmgm.2019.01.018_bib78"},{"key":"10.1016\/j.jmgm.2019.01.018_bib79","doi-asserted-by":"crossref","first-page":"336","DOI":"10.1104\/pp.010875","article-title":"Cellulose synthase-like genes of rice","volume":"128","author":"Hazen","year":"2002","journal-title":"Plant Physiol."},{"key":"10.1016\/j.jmgm.2019.01.018_bib80","doi-asserted-by":"crossref","first-page":"2221","DOI":"10.1073\/pnas.0409179102","article-title":"Expression of cellulose synthase-like (Csl) genes in insect cells reveals that CslA family members encode mannan synthases","volume":"102","author":"Liepman","year":"2005","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.jmgm.2019.01.018_bib81","doi-asserted-by":"crossref","first-page":"1940","DOI":"10.1126\/science.1122975","article-title":"Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1, 3; 1, 4)-\u2216s s-D-glucans","volume":"311","author":"Burton","year":"2006","journal-title":"Science"},{"key":"10.1016\/j.jmgm.2019.01.018_bib82","doi-asserted-by":"crossref","first-page":"8550","DOI":"10.1073\/pnas.0703133104","article-title":"A\u00a0gene from the cellulose synthase-like C family encodes a \u03b2-1, 4 glucan synthase","volume":"104","author":"Cocuron","year":"2007","journal-title":"Proc. Natl. Acad. Sci. Unit. States Am."},{"key":"10.1016\/j.jmgm.2019.01.018_bib83","doi-asserted-by":"crossref","first-page":"786","DOI":"10.1104\/pp.102.019331","article-title":"Expression of a mutant form of cellulose synthase AtCesA7 causes dominant negative effect on cellulose biosynthesis","volume":"132","author":"Zhong","year":"2003","journal-title":"Plant Physiol."}],"container-title":["Journal of Molecular Graphics and Modelling"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1093326318308064?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1093326318308064?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,21]],"date-time":"2025-10-21T21:01:32Z","timestamp":1761080492000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1093326318308064"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,5]]},"references-count":83,"alternative-id":["S1093326318308064"],"URL":"https:\/\/doi.org\/10.1016\/j.jmgm.2019.01.018","relation":{},"ISSN":["1093-3263"],"issn-type":[{"type":"print","value":"1093-3263"}],"subject":[],"published":{"date-parts":[[2019,5]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Computational approach to understand molecular mechanism involved in BPH resistance in Bt- rice plant","name":"articletitle","label":"Article Title"},{"value":"Journal of Molecular Graphics and Modelling","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jmgm.2019.01.018","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2019 Elsevier Inc. All rights reserved.","name":"copyright","label":"Copyright"}]}}