{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,7]],"date-time":"2026-10-07T02:03:32Z","timestamp":1791338612127,"version":"4.3.1"},"reference-count":34,"publisher":"Elsevier BV","issue":"3","license":[{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,2,4]],"date-time":"2025-02-04T00:00:00Z","timestamp":1738627200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100020473","name":"Badan Riset dan Inovasi Nasional","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100020473","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100014538","name":"Lembaga Pengelola Dana Pendidikan","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100014538","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Microbiology, Immunology and Infection"],"published-print":{"date-parts":[[2025,6]]},"DOI":"10.1016\/j.jmii.2025.01.007","type":"journal-article","created":{"date-parts":[[2025,2,11]],"date-time":"2025-02-11T17:41:28Z","timestamp":1739295688000},"page":"325-332","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":6,"title":["An insight of Streptococcus pneumoniae serotype 3 genomic profile in Indonesia"],"prefix":"10.1016","volume":"58","author":[{"given":"Ratna Fathma","family":"Sari","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fadilah","family":"Fadilah","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yustinus","family":"Maladan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Rosantia","family":"Sarassari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8862-6707","authenticated-orcid":false,"given":"Miftahuddin Majid","family":"Khoeri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kuntjoro","family":"Harimurti","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lindawati","family":"Alimsardjono","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7639-7441","authenticated-orcid":false,"given":"Dodi","family":"Safari","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"1","key":"10.1016\/j.jmii.2025.01.007_bib1","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-022-17600-6","article-title":"Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018","volume":"12","author":"Cleary","year":"2022","journal-title":"Sci Rep"},{"issue":"43","key":"10.1016\/j.jmii.2025.01.007_bib2","doi-asserted-by":"crossref","first-page":"6310","DOI":"10.1016\/j.vaccine.2019.08.059","article-title":"Pneumococcal conjugate vaccine against serotype 3 pneumococcal pneumonia in adults: a systematic review and pooled analysis","volume":"37","author":"McLaughlin","year":"2019","journal-title":"Vaccine"},{"issue":"12","key":"10.1016\/j.jmii.2025.01.007_bib3","doi-asserted-by":"crossref","first-page":"2135","DOI":"10.1093\/cid\/ciy920","article-title":"Effectiveness of 13-valent pneumococcal conjugate vaccine against invasive disease caused by serotype 3 in children: a systematic review and meta-analysis of observational studies","volume":"68","author":"Sings","year":"2019","journal-title":"Clin Infect Dis"},{"issue":"1","key":"10.1016\/j.jmii.2025.01.007_bib4","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1016\/j.jmii.2021.08.002","article-title":"Carriage of Streptococcus pneumoniae in children under five years of age prior to pneumococcal vaccine introduction in Southeast Asia: a systematic review and meta-analysis (2001\u20132019)","volume":"55","author":"Daningrat","year":"2022","journal-title":"J Microbiol Immunol Infect"},{"issue":"6","key":"10.1016\/j.jmii.2025.01.007_bib5","doi-asserted-by":"crossref","first-page":"1175","DOI":"10.1016\/j.jmii.2020.10.003","article-title":"Serotype distribution and antimicrobial profile of Streptococcus pneumoniae isolated from adult patients with community-acquired pneumonia in Jakarta, Indonesia","volume":"54","author":"Amanda","year":"2021","journal-title":"J Microbiol Immunol Infect"},{"issue":"1","key":"10.1016\/j.jmii.2025.01.007_bib6","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0246122","article-title":"Streptococcus pneumoniae carriage and antibiotic susceptibility among Indonesian pilgrims during the Hajj pilgrimage in 2015. Karunasagar I","volume":"16","author":"Harimurti","year":"2021","journal-title":"PLoS One"},{"issue":"5","key":"10.1016\/j.jmii.2025.01.007_bib7","doi-asserted-by":"crossref","first-page":"396","DOI":"10.3390\/pathogens9050396","article-title":"Characteristics of serotype 3 invasive pneumococcal disease before and after universal childhood immunization with PCV13 in Massachusetts","volume":"9","author":"Lapidot","year":"2020","journal-title":"Pathogens"},{"issue":"2","key":"10.1016\/j.jmii.2025.01.007_bib8","doi-asserted-by":"crossref","first-page":"338","DOI":"10.7705\/biomedica.5407","article-title":"Streptococcus pneumoniae serotype 3 genotypes in invasive isolates from Colombia","volume":"41","author":"Alarc\u00f3n","year":"2021","journal-title":"Biomedica"},{"key":"10.1016\/j.jmii.2025.01.007_bib9","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2020.613287","article-title":"Sugar-coated killer: serotype 3 pneumococcal disease","volume":"10","author":"Luck","year":"2020","journal-title":"Front Cell Infect Microbiol"},{"issue":"2","key":"10.1016\/j.jmii.2025.01.007_bib10","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1128\/CVI.00591-15","article-title":"Capsular polysaccharide (CPS) release by serotype 3 pneumococcal strains reduces the protective effect of anti-type 3 CPS antibodies","volume":"23","author":"Choi","year":"2016","journal-title":"Clin Vaccine Immunol"},{"key":"10.1016\/j.jmii.2025.01.007_bib11","doi-asserted-by":"crossref","DOI":"10.1093\/infdis\/jiae040","article-title":"Clonal expansion of a Streptococcus pneumoniae serotype 3 capsule variant sequence type 700 with enhanced vaccine escape potential after 13-valent pneumococcal conjugate vaccine introduction","author":"Kalizang\u2019oma","year":"2024","journal-title":"J Infect Dis"},{"key":"10.1016\/j.jmii.2025.01.007_bib12","doi-asserted-by":"crossref","first-page":"84","DOI":"10.1186\/s13073-021-00901-2","article-title":"Global genomic pathogen surveillance to inform vaccine strategies: a decade-long expedition in pneumococcal genomics","volume":"13","author":"Bentley","year":"2021","journal-title":"Genome Med"},{"key":"10.1016\/j.jmii.2025.01.007_bib13","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-022-17600-6","article-title":"Changes in serotype prevalence of Streptococcus pneumoniae in Southampton, UK between 2006 and 2018","volume":"12","author":"Cleary","year":"2022","journal-title":"Sci Rep"},{"issue":"11","key":"10.1016\/j.jmii.2025.01.007_bib14","doi-asserted-by":"crossref","first-page":"845","DOI":"10.3390\/genes10110845","article-title":"Evolution of Streptococcus pneumoniae serotype 3 in England and Wales: a major vaccine evader","volume":"10","author":"Groves","year":"2019","journal-title":"Genes"},{"key":"10.1016\/j.jmii.2025.01.007_bib15","article-title":"Clonal expansion of a Streptococcus pneumoniae serotype 3 capsule variant sequence type 700 with enhanced vaccine escape potential after 13-valent pneumococcal conjugate vaccine introduction","volume":"26","author":"Kalizang\u2019oma","year":"2024","journal-title":"J Infect Dis"},{"issue":"4","key":"10.1016\/j.jmii.2025.01.007_bib16","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1006966","article-title":"The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome","volume":"14","author":"Azarian","year":"2018","journal-title":"PLoS Pathog"},{"key":"10.1016\/j.jmii.2025.01.007_bib17","doi-asserted-by":"crossref","DOI":"10.1016\/j.dib.2024.110251","article-title":"Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population","volume":"53","author":"Khoeri","year":"2024","journal-title":"Data Brief"},{"issue":"3","key":"10.1016\/j.jmii.2025.01.007_bib18","doi-asserted-by":"crossref","DOI":"10.1099\/acmi.0.000703.v4","article-title":"Nasopharyngeal carriage rate, serotype distribution, and antimicrobial profiles of Streptococcus pneumoniae among patients with acute respiratory tract infection in Manado, North Sulawesi, Indonesia","volume":"6","author":"Purwanto","year":"2024","journal-title":"Access Microbiol"},{"issue":"1","key":"10.1016\/j.jmii.2025.01.007_bib19","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0297041","article-title":"Nasopharyngeal carriage of Streptococcus pneumoniae among children <5 years of age in Indonesia prior to pneumococcal conjugate vaccine introduction","volume":"19","author":"Safari","year":"2024","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.jmii.2025.01.007_bib20","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0246122","article-title":"Streptococcus pneumoniae carriage and antibiotic susceptibility among Indonesian pilgrims during the Hajj pilgrimage in 2015","volume":"16","author":"Harimurti","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.jmii.2025.01.007_bib21","doi-asserted-by":"crossref","DOI":"10.1016\/j.dib.2024.110251","article-title":"Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population","volume":"53","author":"Khoeri","year":"2024","journal-title":"Data Brief"},{"issue":"3","key":"10.1016\/j.jmii.2025.01.007_bib22","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1007134","article-title":"ASA3P: an automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates","volume":"16","author":"Schwengers","year":"2020","journal-title":"PLoS Comput Biol"},{"issue":"1","key":"10.1016\/j.jmii.2025.01.007_bib23","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1038\/s41564-020-00834-3","article-title":"Community-led, integrated, reproducible multi-omics with anvi'o","volume":"6","author":"Eren","year":"2021","journal-title":"Nat Microbiol"},{"issue":"3","key":"10.1016\/j.jmii.2025.01.007_bib24","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.01864-19","article-title":"The clinical and laboratory standards Institute subcommittee on antimicrobial susceptibility testing: background, organization, functions, and processes","volume":"58","author":"Weinstein","year":"2020","journal-title":"J Clin Microbiol"},{"issue":"9","key":"10.1016\/j.jmii.2025.01.007_bib25","doi-asserted-by":"crossref","first-page":"4194","DOI":"10.1128\/JCM.41.9.4194-4216.2003","article-title":"Clonal distribution of invasive pneumococcal isolatesfrom children and selected adults in the United States prior to7-valent conjugate VaccineIntroduction","volume":"41","author":"Gertz","year":"2003","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.jmii.2025.01.007_bib26","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.ijid.2013.11.005","article-title":"Serotypes and antibiotic resistance of non-invasive Streptococcus pneumoniae circulating in pediatric hospitals in Moscow, Russia","volume":"20","author":"Mayanskiy","year":"2014","journal-title":"Int J Infect Dis"},{"key":"10.1016\/j.jmii.2025.01.007_bib27","doi-asserted-by":"crossref","unstructured":"Hsieh YC, Wang JT, Lee WS, Hsueh PR, Shao PL, Chang LY, et al. Serotype Competence and Penicillin Resistance in Streptococcus pneumoniae - Volume 12, Number 11\u2014November 2006 - Emerging Infectious Diseases journal - CDC. [cited 2024 Jul 7]; Available from: https:\/\/wwwnc.cdc.gov\/eid\/article\/12\/11\/06-0414_article.","DOI":"10.3201\/eid1211.060414"},{"key":"10.1016\/j.jmii.2025.01.007_bib28","article-title":"Serotype distribution, antimicrobial susceptibility, multilocus sequencing type and virulence of invasive Streptococcus pneumoniae in China: a six-year multicenter study","volume":"12","author":"Zhou","year":"2022","journal-title":"Front Microbiol [Internet]"},{"key":"10.1016\/j.jmii.2025.01.007_bib29","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2021.648040","article-title":"Properties of mucoid serotype 3 Streptococcus pneumoniae from children in China","author":"Yang","year":"2021","journal-title":"Front Cell Infect Microbiol [Internet]"},{"issue":"6","key":"10.1016\/j.jmii.2025.01.007_bib30","doi-asserted-by":"crossref","first-page":"1689","DOI":"10.3201\/eid2706.203629","article-title":"Serotype-switch variant of multidrug-resistant Streptococcus pneumoniae sequence type 271","volume":"27","author":"Scherer","year":"2021","journal-title":"Emerg Infect Dis"},{"key":"10.1016\/j.jmii.2025.01.007_bib31","series-title":"The Pangenome [Internet]","first-page":"253","article-title":"Eukaryotic pangenomes","author":"Richard","year":"2020"},{"issue":"3","key":"10.1016\/j.jmii.2025.01.007_bib32","article-title":"Streptococcus pneumoniae serotype 3 population structure in the era of conjugate vaccines, 2001\u20132018","volume":"10","author":"Cella","year":"2024","journal-title":"Microb Genom"},{"issue":"2","key":"10.1016\/j.jmii.2025.01.007_bib33","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.GPP3-0019-2018","article-title":"Streptococcus pneumoniae capsular polysaccharide","volume":"7","author":"Paton","year":"2019","journal-title":"Microbiol Spectr"},{"issue":"4","key":"10.1016\/j.jmii.2025.01.007_bib34","doi-asserted-by":"crossref","first-page":"2309","DOI":"10.1128\/IAI.69.4.2309-2317.2001","article-title":"Essential role for cellular phosphoglucomutase in virulence of type 3 Streptococcus pneumoniae","volume":"69","author":"Hardy","year":"2001","journal-title":"Infect Immun"}],"container-title":["Journal of Microbiology, Immunology and Infection"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1684118225000313?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1684118225000313?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,12]],"date-time":"2026-05-12T21:52:02Z","timestamp":1778622722000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1684118225000313"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,6]]},"references-count":34,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2025,6]]}},"alternative-id":["S1684118225000313"],"URL":"https:\/\/doi.org\/10.1016\/j.jmii.2025.01.007","relation":{},"ISSN":["1684-1182"],"issn-type":[{"value":"1684-1182","type":"print"}],"subject":[],"published":{"date-parts":[[2025,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"An insight of Streptococcus pneumoniae serotype 3 genomic profile in Indonesia","name":"articletitle","label":"Article Title"},{"value":"Journal of Microbiology, Immunology and Infection","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jmii.2025.01.007","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Taiwan Society of Microbiology. Published by Elsevier Taiwan LLC.","name":"copyright","label":"Copyright"}]}}