{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,7]],"date-time":"2026-08-07T15:07:02Z","timestamp":1786115222467,"version":"build-2736575974"},"reference-count":158,"publisher":"Elsevier BV","issue":"4","license":[{"start":{"date-parts":[[2026,8,1]],"date-time":"2026-08-01T00:00:00Z","timestamp":1785542400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,8,1]],"date-time":"2026-08-01T00:00:00Z","timestamp":1785542400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,3,2]],"date-time":"2026-03-02T00:00:00Z","timestamp":1772409600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["2022YFC2303000"],"award-info":[{"award-number":["2022YFC2303000"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008235","name":"Peking Union Medical College Hospital","doi-asserted-by":"publisher","award":["2025-PUMCH-A-088"],"award-info":[{"award-number":["2025-PUMCH-A-088"]}],"id":[{"id":"10.13039\/501100008235","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008235","name":"Peking Union Medical College Hospital","doi-asserted-by":"publisher","award":["UBJ11757"],"award-info":[{"award-number":["UBJ11757"]}],"id":[{"id":"10.13039\/501100008235","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008235","name":"Peking Union Medical College Hospital","doi-asserted-by":"publisher","award":["UBJ11583"],"award-info":[{"award-number":["UBJ11583"]}],"id":[{"id":"10.13039\/501100008235","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005150","name":"Chinese Academy of Medical Sciences &amp; Peking Union Medical College","doi-asserted-by":"publisher","award":["2025bkjg032"],"award-info":[{"award-number":["2025bkjg032"]}],"id":[{"id":"10.13039\/501100005150","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005150","name":"Chinese Academy of Medical Sciences &amp; Peking Union Medical College","doi-asserted-by":"publisher","award":["2021-I2M-1-044"],"award-info":[{"award-number":["2021-I2M-1-044"]}],"id":[{"id":"10.13039\/501100005150","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100001547","name":"China Medical Board Inc","doi-asserted-by":"publisher","award":["23-520"],"award-info":[{"award-number":["23-520"]}],"id":[{"id":"10.13039\/100001547","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100011176","name":"Peking Union Medical College","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100011176","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002855","name":"Ministry of Science and Technology of the People&apos;s Republic of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002855","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["clinicalkey.com","clinicalkey.com.au","clinicalkey.es","clinicalkey.fr","clinicalkey.jp","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Microbiology, Immunology and Infection"],"published-print":{"date-parts":[[2026,8]]},"DOI":"10.1016\/j.jmii.2026.03.003","type":"journal-article","created":{"date-parts":[[2026,3,7]],"date-time":"2026-03-07T08:04:11Z","timestamp":1772870651000},"page":"425-437","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["The 2025 guidance on the surveillance and control of Candida infections: Recommendations from the China invasive fungal surveillance net (CHIF-NET) study group"],"prefix":"10.1016","volume":"59","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-2103-7008","authenticated-orcid":false,"given":"Meng","family":"Xiao","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"He","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xin","family":"Fan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Menglan","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jing","family":"Lin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Li","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6823-4757","authenticated-orcid":false,"given":"Jun","family":"Xia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhiyong","family":"Zong","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wenkui","family":"Sun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jun","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiao","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xin","family":"Su","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuqian","family":"Sun","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fan","family":"Yang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Na","family":"Cui","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sizhou","family":"Feng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yi","family":"Shi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lixin","family":"Xie","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Chao","family":"Zhuo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Minggui","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ruoyu","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yingchun","family":"Xu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhengyin","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib1","doi-asserted-by":"crossref","first-page":"e280","DOI":"10.1016\/S1473-3099(24)00749-7","article-title":"Global guideline for the diagnosis and management of candidiasis: an initiative of the ECMM in cooperation with ISHAM and ASM","volume":"25","author":"Cornely","year":"2025","journal-title":"Lancet Infect Dis"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib2","doi-asserted-by":"crossref","first-page":"e428","DOI":"10.1016\/S1473-3099(23)00692-8","article-title":"Global incidence and mortality of severe fungal disease","volume":"24","author":"Denning","year":"2024","journal-title":"Lancet Infect Dis"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib3","article-title":"Candida auris: new clade, same challenges","volume":"5","year":"2024","journal-title":"Lancet Microbe"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib4","doi-asserted-by":"crossref","first-page":"8369","DOI":"10.1038\/s41467-023-43380-2","article-title":"Tandem gene duplications contributed to high-level azole resistance in a rapidly expanding Candida tropicalis population","volume":"14","author":"Fan","year":"2023","journal-title":"Nat Commun"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib5","doi-asserted-by":"crossref","first-page":"e470","DOI":"10.1016\/S2666-5247(23)00067-8","article-title":"Worldwide emergence of fluconazole-resistant Candida parapsilosis: current framework and future research roadmap","volume":"4","author":"Daneshnia","year":"2023","journal-title":"Lancet Microbe"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib6","doi-asserted-by":"crossref","first-page":"e1","DOI":"10.1093\/cid\/civ933","article-title":"Clinical practice guideline for the management of candidiasis: 2016 update by the infectious diseases society of America","volume":"62","author":"Pappas","year":"2016","journal-title":"Clin Infect Dis"},{"key":"10.1016\/j.jmii.2026.03.003_bib7","series-title":"WHO Handbook for Guideline development","year":"2014"},{"issue":"i4852","key":"10.1016\/j.jmii.2026.03.003_bib8","article-title":"The AGREE reporting checklist: a tool to improve reporting of clinical practice guidelines","volume":"354","year":"2016","journal-title":"Br Med J"},{"key":"10.1016\/j.jmii.2026.03.003_bib9","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1016\/j.zefq.2017.10.008","article-title":"[A reporting tool for practice guidelines in health care: the RIGHT statement]","volume":"127\u2013128","author":"Chen","year":"2017","journal-title":"Z Evid Fortbild Qual Gesundhwes"},{"key":"10.1016\/j.jmii.2026.03.003_bib10","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1016\/j.zefq.2018.05.004","article-title":"[GRADE: Evidence to Decision (EtD) frameworks - a systematic and transparent approach to making well informed healthcare choices. 1: Introduction]","volume":"134","author":"Nussbaumer-Streit","year":"2018","journal-title":"Z Evid Fortbild Qual Gesundhwes"},{"issue":"Suppl 2","key":"10.1016\/j.jmii.2026.03.003_bib11","doi-asserted-by":"crossref","first-page":"S139","DOI":"10.1093\/infdis\/jiz573","article-title":"Distribution and antifungal susceptibility of Candida species causing candidemia in China: an update from the CHIF-NET study","volume":"221","author":"Xiao","year":"2020","journal-title":"J Infect Dis"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib12","doi-asserted-by":"crossref","first-page":"548","DOI":"10.7326\/M14-1885","article-title":"Guidelines international network: principles for disclosure of interests and management of conflicts in guidelines","volume":"163","author":"Schunemann","year":"2015","journal-title":"Ann Intern Med"},{"issue":"11","key":"10.1016\/j.jmii.2026.03.003_bib13","doi-asserted-by":"crossref","DOI":"10.1128\/jcm.00873-23","article-title":"A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC","volume":"61","author":"de Hoog","year":"2023","journal-title":"J Clin Microbiol"},{"issue":"Suppl 7","key":"10.1016\/j.jmii.2026.03.003_bib14","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1111\/imj.15589","article-title":"Consensus guidelines for the diagnosis and management of invasive candidiasis in haematology, oncology and intensive care settings, 2021","volume":"51","author":"Keighley","year":"2021","journal-title":"Intern Med J"},{"key":"10.1016\/j.jmii.2026.03.003_bib15","unstructured":"Higgins JPT TJ, Chandler J, Cumpston M, Li T, Page MJ, Welch VA, Cochrane handbook for systematic reviews of interventions (version 6.5). www.cochrane.org\/handbook [Accessed 1 October 2025]."},{"key":"10.1016\/j.jmii.2026.03.003_bib16","article-title":"Amstar 2: a critical appraisal tool for systematic reviews that include randomised or non-randomised studies of healthcare interventions, or both","volume":"358","author":"Shea","year":"2017","journal-title":"Br Med J"},{"key":"10.1016\/j.jmii.2026.03.003_bib17","doi-asserted-by":"crossref","DOI":"10.1136\/bmj.d5928","article-title":"The Cochrane Collaboration's tool for assessing risk of bias in randomised trials","volume":"343","author":"Higgins","year":"2011","journal-title":"Br Med J"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib18","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1007\/s10654-010-9491-z","article-title":"Critical evaluation of the Newcastle-Ottawa scale for the assessment of the quality of nonrandomized studies in meta-analyses","volume":"25","author":"Stang","year":"2010","journal-title":"Eur J Epidemiol"},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib19","doi-asserted-by":"crossref","first-page":"529","DOI":"10.7326\/0003-4819-155-8-201110180-00009","article-title":"QUADAS-2: a revised tool for the quality assessment of diagnostic accuracy studies","volume":"155","author":"Whiting","year":"2011","journal-title":"Ann Intern Med"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib20","doi-asserted-by":"crossref","first-page":"280","DOI":"10.7326\/0003-4819-158-4-201302190-00009","article-title":"Assessing bias in studies of prognostic factors","volume":"158","author":"Hayden","year":"2013","journal-title":"Ann Intern Med"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib21","doi-asserted-by":"crossref","first-page":"3522","DOI":"10.1038\/s41591-024-03275-1","article-title":"Seven-year performance of a clinical metagenomic next-generation sequencing test for diagnosis of central nervous system infections","volume":"30","author":"Benoit","year":"2024","journal-title":"Nat Med"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib22","doi-asserted-by":"crossref","first-page":"816","DOI":"10.1016\/j.cmi.2024.02.024","article-title":"Is the T2MR Candida Panel a suitable alternative to the SeptiFast for the rapid diagnosis of candidemia in routine clinical practice?","volume":"30","author":"Camp","year":"2024","journal-title":"Clin Microbiol Infect"},{"key":"10.1016\/j.jmii.2026.03.003_bib23","article-title":"Evaluation of Droplet Digital PCR assay for the diagnosis of candidemia in blood samples","volume":"12","author":"Chen","year":"2021","journal-title":"Front Microbiol"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib24","doi-asserted-by":"crossref","first-page":"1210","DOI":"10.1186\/s12879-024-10009-8","article-title":"Blood microbiota in HIV-infected and HIV-uninfected patients with suspected sepsis detected by metagenomic next-generation sequencing","volume":"24","author":"Chen","year":"2024","journal-title":"BMC Infect Dis"},{"issue":"5-6","key":"10.1016\/j.jmii.2026.03.003_bib25","doi-asserted-by":"crossref","first-page":"405","DOI":"10.1007\/s11046-015-9977-z","article-title":"A real-time PCR assay based on 5.8S rRNA gene (5.8S rDNA) for rapid detection of candida from whole blood samples","volume":"181","author":"Guo","year":"2016","journal-title":"Mycopathologia"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib26","article-title":"Clinical value of macrogenome next-generation sequencing on infections","volume":"19","author":"Han","year":"2024","journal-title":"Open Life Sci"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib27","doi-asserted-by":"crossref","DOI":"10.1016\/j.diagmicrobio.2024.116620","article-title":"Diagnostic value of metagenomic next-generation sequencing for bronchoalveolar lavage diagnostics in patients with lower respiratory tract infections","volume":"111","author":"Jiang","year":"2025","journal-title":"Diagn Microbiol Infect Dis"},{"key":"10.1016\/j.jmii.2026.03.003_bib28","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijmm.2024.151630","article-title":"Real-time application of ITS and D1-D3 nanopore amplicon metagenomic sequencing in fungal infections: enhancing fungal infection diagnostics","volume":"316","author":"Kim","year":"2024","journal-title":"Int J Med Microbiol"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib29","doi-asserted-by":"crossref","DOI":"10.3390\/jof8090972","article-title":"Performance of Multiplex PCR and \u03b2-1,3-D-Glucan testing for the diagnosis of candidemia","volume":"8","author":"Koc","year":"2022","journal-title":"J Fungi"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib30","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0197319","article-title":"Molecular quantification and differentiation of Candida species in biological specimens of patients with liver cirrhosis","volume":"13","author":"Krohn","year":"2018","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib31","doi-asserted-by":"crossref","first-page":"1963","DOI":"10.1038\/s41598-025-86295-2","article-title":"The value of metagenomic next-generation sequencing in the diagnosis of fever of unknown origin","volume":"15","author":"Lai","year":"2025","journal-title":"Sci Rep"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib32","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1186\/s13054-016-1324-3","article-title":"Contribution of Candida biomarkers and DNA detection for the diagnosis of invasive candidiasis in ICU patients with severe abdominal conditions","volume":"20","author":"Le\u00f3n","year":"2016","journal-title":"Crit Care"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib33","doi-asserted-by":"crossref","first-page":"105","DOI":"10.5847\/wjem.j.1920-8642.2024.025","article-title":"Impact of next-generation sequencing on antimicrobial treatment in immunocompromised adults with suspected infections","volume":"15","author":"Li","year":"2024","journal-title":"World J Emerg Med"},{"key":"10.1016\/j.jmii.2026.03.003_bib34","article-title":"Diagnostic performance of metagenomic sequencing in patients with suspected infection: a large-scale retrospective study","volume":"14","author":"Li","year":"2024","journal-title":"Front Cell Infect Microbiol"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib35","first-page":"1128","article-title":"Multicenter study on the detection of pathogens in primary infectious diseases of the spine using metagenomic next-generation sequencing technology]","volume":"62","author":"Li","year":"2024","journal-title":"Zhonghua Wai Ke Za Zhi"},{"issue":"10","key":"10.1016\/j.jmii.2026.03.003_bib36","first-page":"946","article-title":"Microbiological characteristics of patients with severe burns caused by blast and application of meta- genomics next-generation sequencing in the detection of pathogenic microorganisms","volume":"37","author":"Luo","year":"2021","journal-title":"Zhonghua Shaoshang Zazhi"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib37","doi-asserted-by":"crossref","DOI":"10.1093\/ofid\/ofaf288","article-title":"Metagenomic next-generation sequencing compared with blood culture as first-line diagnostic method for bloodstream infection in hematologic patients with febrile neutropenia: a multicenter, prospective study","volume":"12","author":"Ma","year":"2025","journal-title":"Open Forum Infect Dis"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib38","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1186\/s12941-024-00698-z","article-title":"Direct metagenomics investigation of non-surgical hard-to-heal wounds: a review","volume":"23","author":"Morsli","year":"2024","journal-title":"Ann Clin Microbiol Antimicrob"},{"issue":"15","key":"10.1016\/j.jmii.2026.03.003_bib39","doi-asserted-by":"crossref","DOI":"10.3390\/diagnostics14151664","article-title":"Utilizing next-generation sequencing: advancements in the diagnosis of fungal infections","volume":"14","author":"Naik","year":"2024","journal-title":"Diagnostics"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib40","doi-asserted-by":"crossref","DOI":"10.1080\/14767058.2023.2207113","article-title":"Next-generation sequencing-based detection of Ureaplasma in the gastric fluid of neonates with respiratory distress and chorioamnionitis","volume":"36","author":"Okumura","year":"2023","journal-title":"J Matern Fetal Neonatal Med"},{"key":"10.1016\/j.jmii.2026.03.003_bib41","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2024.1441805","article-title":"Enhancing ascitic fungal infection diagnosis through next-generation sequencing: a pilot study in surgical ICU patients","volume":"14","author":"Posadas-Cantera","year":"2024","journal-title":"Front Cell Infect Microbiol"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib42","doi-asserted-by":"crossref","DOI":"10.3390\/jof8090935","article-title":"An evaluation of the OLM CandID real-time PCR to aid in the diagnosis of invasive candidiasis when testing serum samples","volume":"8","author":"Price","year":"2022","journal-title":"J Fungi"},{"issue":"16","key":"10.1016\/j.jmii.2026.03.003_bib43","doi-asserted-by":"crossref","DOI":"10.1097\/MD.0000000000037845","article-title":"Clinical application of metagenomic next-generation sequencing for the diagnosis of suspected infection in adults: a cross-sectional study","volume":"103","author":"Sun","year":"2024","journal-title":"Medicine (Baltim)"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib44","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1007\/s00784-024-06097-0","article-title":"Microbial spectrum and resistance of odontogenic abscesses - microbiological analysis using next generation sequencing","volume":"29","author":"Thol","year":"2024","journal-title":"Clin Oral Investig"},{"key":"10.1016\/j.jmii.2026.03.003_bib45","article-title":"Comparing NGS-Based identification of bloodstream infections to traditional culture methods for enhanced ICU care: a comprehensive study","volume":"14","author":"Wang","year":"2024","journal-title":"Front Cell Infect Microbiol"},{"key":"10.1016\/j.jmii.2026.03.003_bib46","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.1070688","article-title":"Detection of Candida DNA in peritoneal fluids by PCR assay optimizing the diagnosis and treatment for intra-abdominal candidiasis in high-risk ICU patients: a prospective cohort study","volume":"13","author":"Xie","year":"2023","journal-title":"Front Microbiol"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib47","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.03598-23","article-title":"Metagenomic next-generation sequencing of osteoarticular tissue for the diagnosis of suspected osteoarticular tuberculosis","volume":"12","author":"Yan","year":"2024","journal-title":"Microbiol Spectr"},{"key":"10.1016\/j.jmii.2026.03.003_bib48","article-title":"Clinical performance of metagenomic next-generation sequencing for diagnosis of invasive fungal disease after hematopoietic cell transplant","volume":"14","author":"Zhang","year":"2024","journal-title":"Front Cell Infect Microbiol"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib49","first-page":"718","article-title":"Value of metagenomic next-generation sequencing in children with hematological malignancies complicated with infections","volume":"25","author":"Zhong","year":"2023","journal-title":"Zhong Guo Dang Dai Er Ke Za Zhi"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib50","doi-asserted-by":"crossref","first-page":"1071","DOI":"10.1093\/cid\/civ447","article-title":"Randomized trial of rapid multiplex polymerase chain reaction-based blood culture identification and susceptibility testing","volume":"61","author":"Banerjee","year":"2015","journal-title":"Clin Infect Dis"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib51","doi-asserted-by":"crossref","first-page":"3021","DOI":"10.1128\/JCM.00689-08","article-title":"Multiplex tandem PCR: a novel platform for rapid detection and identification of fungal pathogens from blood culture specimens","volume":"46","author":"Lau","year":"2008","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.jmii.2026.03.003_bib52","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1016\/j.jare.2021.09.011","article-title":"Multilaboratory assessment of metagenomic next-generation sequencing for unbiased microbe detection","volume":"38","author":"Han","year":"2022","journal-title":"J Adv Res"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib53","doi-asserted-by":"crossref","DOI":"10.1128\/msystems.01166-24","article-title":"Optimizing fungal DNA extraction and purification for Oxford Nanopore untargeted shotgun metagenomic sequencing from simulated hemoculture specimens","volume":"10","author":"Langsiri","year":"2025","journal-title":"mSystems"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib54","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1016\/j.mimet.2005.06.008","article-title":"An assessment of the efficiency of fungal DNA extraction methods for maximizing the detection of medically important fungi using PCR","volume":"65","author":"Karakousis","year":"2006","journal-title":"J Microbiol Methods"},{"key":"10.1016\/j.jmii.2026.03.003_bib55","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1016\/j.ijid.2019.06.001","article-title":"Analysis of Candida auris fungemia at a single facility in Kenya","volume":"85","author":"Adam","year":"2019","journal-title":"Int J Infect Diss"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib56","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0302629","article-title":"Spectrum of infection and outcomes in individuals with Candida auris infection in Qatar","volume":"19","author":"Al Ajmi","year":"2024","journal-title":"PLoS One"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib57","article-title":"Ongoing challenges with healthcare-associated Candida auris outbreaks in Oman","volume":"5","author":"Al","year":"2019","journal-title":"J Fungi"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib58","doi-asserted-by":"crossref","DOI":"10.3390\/jof6040307","article-title":"Molecular epidemiology of Candida auris outbreak in a major secondary-care Hospital in Kuwait","volume":"6","author":"Alfouzan","year":"2020","journal-title":"J Fungi"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib59","doi-asserted-by":"crossref","DOI":"10.3390\/jof7010031","article-title":"Characteristics, risk factors, and survival analysis of Candida auris cases: results of one-year national surveillance data from Oman","volume":"7","author":"Al-Rashdi","year":"2021","journal-title":"J Fungi"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib60","doi-asserted-by":"crossref","first-page":"149","DOI":"10.1017\/ice.2020.414","article-title":"Management of Candida auris outbreak in a tertiary-care setting in Saudi Arabia","volume":"42","author":"Alshamrani","year":"2021","journal-title":"Infect Control Hosp Epidemiol"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib61","doi-asserted-by":"crossref","DOI":"10.3390\/jof9040430","article-title":"The mortality attributable to candidemia in C. auris is higher than that in other candida species: myth or reality?","volume":"9","author":"Alvarez-Moreno","year":"2023","journal-title":"J Fungi"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib62","doi-asserted-by":"crossref","first-page":"876","DOI":"10.3201\/eid2605.191588","article-title":"Clinical outcomes of patients treated for Candida auris infections in a multisite health system, Illinois, USA","volume":"26","author":"Arensman","year":"2020","journal-title":"Emerg Infect Dis"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib63","doi-asserted-by":"crossref","first-page":"508","DOI":"10.1177\/00494755211028685","article-title":"Prevalence, epidemiology and clinical outcome of Candida auris infections: experience from a tertiary care hospital in Jaipur","volume":"51","author":"Bacchani","year":"2021","journal-title":"Trop Doct"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib64","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1016\/j.jhin.2019.02.021","article-title":"Emergence of Candida auris in Russia","volume":"102","author":"Barantsevich","year":"2019","journal-title":"J Hosp Infect"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib65","article-title":"Candida auris bloodstream infections in Russia","volume":"9","author":"Barantsevich","year":"2020","journal-title":"Antibiotics (Basel)"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib66","doi-asserted-by":"crossref","first-page":"1485","DOI":"10.3201\/eid2907.230540","article-title":"Candida auris\u2012Associated hospitalizations, United States, 2017-2022","volume":"29","author":"Benedict","year":"2023","journal-title":"Emerg Infect Dis"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib67","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1093\/jpids\/piaa038","article-title":"Bloodstream infections with Candida auris among children in Colombia: clinical characteristics and outcomes of 34 cases","volume":"10","author":"Berrio","year":"2021","journal-title":"J Pediatric Infect Dis Soc"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib68","doi-asserted-by":"crossref","first-page":"1297","DOI":"10.3201\/eid2907.221888","article-title":"Nationwide outbreak of Candida auris Infections driven by COVID-19 hospitalizations, Israel, 2021-2022","volume":"29","author":"Biran","year":"2023","journal-title":"Emerg Infect Dis"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib69","doi-asserted-by":"crossref","first-page":"917","DOI":"10.1007\/s11046-020-00478-1","article-title":"Case-case comparison of Candida auris versus other candida species bloodstream infections: results of an outbreak investigation in Colombia","volume":"185","author":"Caceres","year":"2020","journal-title":"Mycopathologia"},{"issue":"10","key":"10.1016\/j.jmii.2026.03.003_bib70","doi-asserted-by":"crossref","first-page":"1565","DOI":"10.1111\/jpc.15019","article-title":"Neonatal Candida auris infection: management and prevention strategies - a single centre experience","volume":"56","author":"Chandramati","year":"2020","journal-title":"J Paediatr Child Health"},{"issue":"11","key":"10.1016\/j.jmii.2026.03.003_bib71","doi-asserted-by":"crossref","first-page":"2694","DOI":"10.3201\/eid2611.203504","article-title":"Multidrug-Resistant Candida auris infections in critically ill Coronavirus disease patients, India, April-July 2020","volume":"26","author":"Chowdhary","year":"2020","journal-title":"Emerg Infect Dis"},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib72","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms10081521","article-title":"First cases of Candida auris in a referral intensive care unit in Piedmont Region, Italy","volume":"10","author":"Corcione","year":"2022","journal-title":"Microorganisms"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib73","doi-asserted-by":"crossref","first-page":"1093","DOI":"10.1017\/ice.2022.204","article-title":"Clinical, microbiological, and genomic characteristics of clade-III Candida auris colonization and infection in southern California, 2019-2022","volume":"44","author":"de St Maurice","year":"2023","journal-title":"Infect Control Hosp Epidemiol"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib74","doi-asserted-by":"crossref","first-page":"641","DOI":"10.1007\/s15010-018-1164-y","article-title":"Invasive Candida auris infections in Kuwait hospitals: epidemiology, antifungal treatment and outcome","volume":"46","author":"Khan","year":"2018","journal-title":"Infection"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib75","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1186\/s12879-023-08477-5","article-title":"Candida auris blood stream infection- a descriptive study from Qatar","volume":"23","author":"Koleri","year":"2023","journal-title":"BMC Infect Dis"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib76","doi-asserted-by":"crossref","first-page":"1384","DOI":"10.1016\/j.ajic.2024.07.012","article-title":"A multicentric outbreak of Candida auris in Mexico: 2020 to 2023","volume":"52","author":"la Garza","year":"2024","journal-title":"Am J Infect Control"},{"issue":"10","key":"10.1016\/j.jmii.2026.03.003_bib77","article-title":"A cluster of Candida auris blood stream infections in a tertiary care hospital in Oman from 2016 to 2019","volume":"9","author":"Mohsin","year":"2020","journal-title":"Antibiotics (Basel)"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib78","doi-asserted-by":"crossref","first-page":"1238","DOI":"10.1093\/mmy\/myab057","article-title":"C. auris and non-C. auris candidemia in hospitalized adult and pediatric COVID-19 patients; single center data from Pakistan","volume":"59","author":"Moin","year":"2021","journal-title":"Med Mycol"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib79","doi-asserted-by":"crossref","first-page":"162","DOI":"10.3201\/eid2301.161497","article-title":"Invasive infections with multidrug-resistant yeast Candida auris, Colombia","volume":"23","author":"Morales-L\u00f3pez","year":"2017","journal-title":"Emerg Infect Dis"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib80","article-title":"Characteristics and management of candidaemia episodes in an established Candida auris outbreak","volume":"9","author":"Mulet","year":"2020","journal-title":"Antibiotics (Basel)"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib81","doi-asserted-by":"crossref","DOI":"10.3390\/jof9070715","article-title":"Mortality caused by Candida auris Bloodstream infections in comparison with other candida species, a multicentre retrospective cohort","volume":"9","author":"Ortiz-Roa","year":"2023","journal-title":"J Fungi"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib82","first-page":"2558","article-title":"Analysis of candidemia cases in a city hospital during the COVID-19 pandemic","volume":"28","author":"Ozalp","year":"2024","journal-title":"Eur Rev Med Pharmacol Sci"},{"issue":"10","key":"10.1016\/j.jmii.2026.03.003_bib83","doi-asserted-by":"crossref","DOI":"10.3390\/jof7100878","article-title":"International multicentre Study of Candida auris infections","volume":"7","author":"Pandya","year":"2021","journal-title":"J Fungi"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib84","doi-asserted-by":"crossref","first-page":"213","DOI":"10.3855\/jidc.14917","article-title":"Clinical and laboratory features of patients with Candida auris cultures, compared to other Candida, at a South African Hospital","volume":"16","author":"Parak","year":"2022","journal-title":"J Infect Dev Ctries"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib85","doi-asserted-by":"crossref","first-page":"601","DOI":"10.3201\/eid2503.180927","article-title":"Management of patients with Candida auris fungemia at community Hospital, Brooklyn, New York, USA, 2016-2018(1)","volume":"25","author":"Park","year":"2019","journal-title":"Emerg Infect Dis"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib86","doi-asserted-by":"crossref","DOI":"10.1111\/myc.13765","article-title":"Clinical and microbiological characteristics of a hospital outbreak of Candida auris in a referral hospital in Lima, Peru","volume":"67","author":"P\u00e9rez-Lazo","year":"2024","journal-title":"Mycoses"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib87","doi-asserted-by":"crossref","DOI":"10.1016\/j.mycmed.2024.101477","article-title":"Candida auris in Greek healthcare facilities: active surveillance results on first cases and outbreaks from eleven hospitals within Attica region","volume":"34","author":"Politi","year":"2024","journal-title":"J Mycol Med"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib88","doi-asserted-by":"crossref","first-page":"498","DOI":"10.1111\/myc.12781","article-title":"An outbreak due to Candida auris with prolonged colonisation and candidaemia in a tertiary care European hospital","volume":"61","author":"Ruiz-Gait\u00e1n","year":"2018","journal-title":"Mycoses"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib89","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1186\/s12879-021-06131-6","article-title":"Evaluating the measures taken to contain a Candida auris outbreak in a tertiary care hospital in South India: an outbreak investigational study","volume":"21","author":"Sathyapalan","year":"2021","journal-title":"BMC Infect Dis"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib90","doi-asserted-by":"crossref","first-page":"384","DOI":"10.1186\/s12879-019-3999-y","article-title":"Clinical spectrum and factors impacting outcome of Candida auris: a single center study from Pakistan","volume":"19","author":"Sayeed","year":"2019","journal-title":"BMC Infect Dis"},{"key":"10.1016\/j.jmii.2026.03.003_bib91","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1186\/s13756-016-0132-5","article-title":"First hospital outbreak of the globally emerging Candida auris in a European hospital","volume":"5","author":"Schelenz","year":"2016","journal-title":"Antimicrob Resist Infect Control"},{"key":"10.1016\/j.jmii.2026.03.003_bib92","doi-asserted-by":"crossref","DOI":"10.1016\/j.idcr.2020.e01007","article-title":"Experience of treating Candida auris cases at a general hospital in the State of Qatar","volume":"23","author":"Shaukat","year":"2021","journal-title":"IDCases"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib93","doi-asserted-by":"crossref","first-page":"e1436","DOI":"10.1093\/cid\/ciac735","article-title":"Comparative outcomes of Candida auris Bloodstream infections: a multicenter retrospective case-control Study","volume":"76","author":"Simon","year":"2023","journal-title":"Clin Infect Dis"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib94","doi-asserted-by":"crossref","first-page":"358","DOI":"10.1016\/j.ajic.2021.10.037","article-title":"A description of the first Candida auris-colonized individuals in New York State, 2016-2017","volume":"50","author":"Southwick","year":"2022","journal-title":"Am J Infect Control"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib95","doi-asserted-by":"crossref","DOI":"10.3390\/jcm12051912","article-title":"Increasing number of cases due to Candida auris in North Italy, July 2019-December 2022","volume":"12","author":"Sticchi","year":"2023","journal-title":"J Clin Med"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib96","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1016\/j.jinf.2019.09.007","article-title":"Candida auris outbreak: mortality, interventions and cost of sustaining control","volume":"79","author":"Taori","year":"2019","journal-title":"J Infect"},{"key":"10.1016\/j.jmii.2026.03.003_bib97","doi-asserted-by":"crossref","DOI":"10.3389\/fpubh.2023.1244351","article-title":"Emergence of highly resistant Candida auris in the United Arab Emirates: a retrospective analysis of evolving national trends","volume":"11","author":"Thomsen","year":"2023","journal-title":"Front Public Health"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib98","doi-asserted-by":"crossref","DOI":"10.1111\/tid.13919","article-title":"Challenges and opportunities in stewardship among solid organ transplant recipients with Candida auris bloodstream infections","volume":"24","author":"Vu","year":"2022","journal-title":"Transpl Infect Dis"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib99","doi-asserted-by":"crossref","DOI":"10.1093\/mmy\/myae065","article-title":"Comparative efficacies of the three echinocandins for Candida auris candidemia: real world evidence from a tertiary centre in India","volume":"62","author":"Prayag","year":"2024","journal-title":"Med Mycol"},{"issue":"11","key":"10.1016\/j.jmii.2026.03.003_bib100","doi-asserted-by":"crossref","first-page":"e718","DOI":"10.1093\/cid\/ciaa435","article-title":"Regional emergence of Candida auris in Chicago and lessons learned from intensive Follow-up at 1 ventilator-capable skilled nursing facility","volume":"71","author":"Pacilli","year":"2020","journal-title":"Clin Infect Dis"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib101","doi-asserted-by":"crossref","first-page":"611","DOI":"10.1001\/jama.2023.24921","article-title":"Management of Candida auris","volume":"331","author":"Wasylyshyn","year":"2024","journal-title":"JAMA"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib102","doi-asserted-by":"crossref","first-page":"74","DOI":"10.1016\/j.ijantimicag.2017.02.019","article-title":"Impact of initial empirical antifungal agents on the outcome of critically ill patients with invasive candidiasis: analysis of the China-SCAN study","volume":"50","author":"Cui","year":"2017","journal-title":"Int J Antimicrob Agents"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib103","doi-asserted-by":"crossref","first-page":"707","DOI":"10.1093\/jac\/dkr511","article-title":"Timing of susceptibility-based antifungal drug administration in patients with Candida bloodstream infection: correlation with outcomes","volume":"67","author":"Grim","year":"2012","journal-title":"J Antimicrob Chemother"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib104","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1136\/ejhpharm-2017-001467","article-title":"Do we need to adopt antifungal stewardship programmes?","volume":"27","author":"Ioannidis","year":"2020","journal-title":"Eur J Hosp Pharm"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib105","doi-asserted-by":"crossref","first-page":"436","DOI":"10.3109\/13693780903208256","article-title":"The impact of delaying the initiation of appropriate antifungal treatment for Candida bloodstream infection","volume":"48","author":"Kludze-Forson","year":"2010","journal-title":"Med Mycol"},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib106","doi-asserted-by":"crossref","first-page":"733.e1","DOI":"10.1016\/j.cmi.2016.05.008","article-title":"Empirical and targeted therapy of candidemia with fluconazole versus echinocandins: a propensity score-derived analysis of a population-based, multicentre prospective cohort","volume":"22","author":"L\u00f3pez-Cort\u00e9s","year":"2016","journal-title":"Clin Microbiol Infect"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib107","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1111\/j.1469-0691.2010.03360.x","article-title":"A multicentre study of antifungal strategies and outcome of Candida spp. peritonitis in intensive-care units","volume":"17","author":"Montravers","year":"2011","journal-title":"Clin Microbiol Infect"},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib109","doi-asserted-by":"crossref","first-page":"1024","DOI":"10.1016\/j.cmi.2020.02.017","article-title":"Antifungal susceptibility testing in Candida, Aspergillus and Cryptococcus infections: are the MICs useful for clinicians?","volume":"26","author":"Bassetti","year":"2020","journal-title":"Clin Microbiol Infect"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib110","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1093\/jpids\/piad014","article-title":"A practical guide to antifungal susceptibility testing","volume":"12","author":"Otto","year":"2023","journal-title":"J Pediatric Infect Dis Soc"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib111","doi-asserted-by":"crossref","DOI":"10.3390\/jof6040216","article-title":"Diagnosis of breakthrough fungal infections in the clinical mycology laboratory: an ECMM consensus statement","volume":"6","author":"Jenks","year":"2020","journal-title":"J Fungi"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib112","doi-asserted-by":"crossref","DOI":"10.1128\/CMR.00069-19","article-title":"Antifungal susceptibility testing: current approaches","volume":"33","author":"Berkow","year":"2020","journal-title":"Clin Microbiol Rev"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib113","doi-asserted-by":"crossref","first-page":"e782","DOI":"10.1016\/S1473-3099(24)00429-8","article-title":"Antifungal susceptibility testing: applicability of methods and strategies for improving access in resource-constrained settings","volume":"24","author":"Kwizera","year":"2024","journal-title":"Lancet Infect Dis"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib114","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13054-020-03265-y","article-title":"(1,3)-\u03b2-D-glucan-based empirical antifungal interruption in suspected invasive candidiasis: a randomized trial","volume":"24","author":"De Pascale","year":"2020","journal-title":"Crit Care"},{"issue":"11","key":"10.1016\/j.jmii.2026.03.003_bib115","doi-asserted-by":"crossref","DOI":"10.1128\/aac.00725-23","article-title":"\u03b2-(1-3)-D-glucan- and mannan-guided early termination of antifungal therapy in ICU patients: a randomized controlled study","volume":"67","author":"Erb","year":"2023","journal-title":"Antimicrob Agents Chemother"},{"issue":"11","key":"10.1016\/j.jmii.2026.03.003_bib116","doi-asserted-by":"crossref","first-page":"1668","DOI":"10.1007\/s00134-017-4932-8","article-title":"Biomarker-based strategy for early discontinuation of empirical antifungal treatment in critically ill patients: a randomized controlled trial","volume":"43","author":"Rouze","year":"2017","journal-title":"Intensive Care Med"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib117","article-title":"Post-prescription audit plus beta-D-glucan assessment decrease echinocandin use in people with suspected invasive candidiasis","volume":"57","author":"Murri","year":"2021","journal-title":"Medicina (Kaunas)"},{"issue":"9","key":"10.1016\/j.jmii.2026.03.003_bib118","doi-asserted-by":"crossref","first-page":"2628","DOI":"10.1093\/jac\/dkw188","article-title":"Discontinuation of empirical antifungal therapy in ICU patients using 1,3-\u03b2-d-glucan","volume":"71","author":"Nucci","year":"2016","journal-title":"J Antimicrob Chemother"},{"issue":"12","key":"10.1016\/j.jmii.2026.03.003_bib119","first-page":"3488","article-title":"Impact of a diagnostics-driven antifungal stewardship programme in a UK tertiary referral teaching hospital","volume":"73","author":"Rautemaa-Richardson","year":"2018","journal-title":"J Antimicrob Chemother"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib120","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijantimicag.2023.106998","article-title":"Tolerability of pulsed high-dose L-AmB as pre-emptive therapy in patients at high risk for intra-abdominal candidiasis: a phase 2 study (LAMBDA study)","volume":"62","author":"Rinaldi","year":"2023","journal-title":"Int J Antimicrob Agents"},{"issue":"Suppl 2","key":"10.1016\/j.jmii.2026.03.003_bib121","doi-asserted-by":"crossref","first-page":"S102","DOI":"10.1093\/cid\/ciaa1943","article-title":"Assessment of the role of 1,3-\u03b2-d-Glucan testing for the diagnosis of invasive fungal infections in adults","volume":"72","author":"Lamoth","year":"2021","journal-title":"Clin Infect Dis"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib122","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1378\/chest.129.1.110","article-title":"Candida colonization of the respiratory tract and subsequent pseudomonas ventilator-associated pneumonia","volume":"129","author":"Azoulay","year":"2006","journal-title":"Chest"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib123","first-page":"131","article-title":"Impact of Candida species on clinical outcomes in patients with suspected ventilator-associated pneumonia","volume":"18","author":"Delisle","year":"2011","journal-title":"Can Respir J"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib124","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1016\/j.jcrc.2008.01.005","article-title":"The clinical significance of Candida colonization of respiratory tract secretions in critically ill patients","volume":"23","author":"Delisle","year":"2008","journal-title":"J Crit Care"},{"key":"10.1016\/j.jmii.2026.03.003_bib125","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2022.105520","article-title":"Clinical impact of Candida respiratory tract colonization and acute lung infections in critically ill patients with COVID-19 pneumonia","volume":"166","author":"Erami","year":"2022","journal-title":"Microb Pathog"},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib126","doi-asserted-by":"crossref","first-page":"1272","DOI":"10.1007\/s00134-012-2584-2","article-title":"Candida spp. airway colonization could promote antibiotic-resistant bacteria selection in patients with suspected ventilator-associated pneumonia","volume":"38","author":"Hamet","year":"2012","journal-title":"Intensive Care Med"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib127","doi-asserted-by":"crossref","first-page":"536.e1","DOI":"10.1016\/j.jcrc.2011.01.002","article-title":"Serum \u03b2-d-glucan of critically ill patients with suspected ventilator-associated pneumonia: preliminary observations","volume":"26","author":"Heyland","year":"2011","journal-title":"J Crit Care"},{"issue":"suppl_2","key":"10.1016\/j.jmii.2026.03.003_bib128","doi-asserted-by":"crossref","first-page":"S146","DOI":"10.1093\/cid\/ciy686","article-title":"Microbial etiology and prognostic factors of ventilator-associated pneumonia: a multicenter retrospective Study in Shanghai","volume":"67","author":"Huang","year":"2018","journal-title":"Clin Infect Dis"},{"issue":"Suppl 1","key":"10.1016\/j.jmii.2026.03.003_bib129","first-page":"S46","article-title":"Molecular detection of Candida spp. and Aspergillus fumigatus in bronchoalveolar lavage fluid of patients with ventilator-associated pneumonia","volume":"19","author":"Khorvash","year":"2014","journal-title":"J Res Med Sci"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib130","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1093\/mmy\/myw009","article-title":"Candida spp. airway colonization: a potential risk factor for Acinetobacter baumannii ventilator-associated pneumonia","volume":"54","author":"Tan","year":"2016","journal-title":"Med Mycol"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib131","doi-asserted-by":"crossref","first-page":"94.e1","DOI":"10.1016\/j.cmi.2015.09.002","article-title":"Impact of Candida spp. isolation in the respiratory tract in patients with intensive care unit-acquired pneumonia","volume":"22","author":"Terraneo","year":"2016","journal-title":"Clin Microbiol Infect"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib132","doi-asserted-by":"crossref","first-page":"834","DOI":"10.1007\/s00134-019-05622-0","article-title":"Impact of bronchial colonization with Candida spp. on the risk of bacterial ventilator-associated pneumonia in the ICU: the FUNGIBACT prospective cohort study","volume":"45","author":"Timsit","year":"2019","journal-title":"Intensive Care Med"},{"key":"10.1016\/j.jmii.2026.03.003_bib133","doi-asserted-by":"crossref","first-page":"575","DOI":"10.1186\/s12879-014-0575-3","article-title":"Safety and efficacy of amphotericin-B deoxycholate inhalation in critically ill patients with respiratory Candida spp. colonization: a retrospective analysis","volume":"14","author":"van der Geest","year":"2014","journal-title":"BMC Infect Dis"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib134","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1007\/s12630-010-9439-5","article-title":"The relationship between Candida species cultured from the respiratory tract and systemic inflammation in critically ill patients with ventilator-associated pneumonia","volume":"58","author":"Williamson","year":"2011","journal-title":"Can J Anaesth"},{"key":"10.1016\/j.jmii.2026.03.003_bib135","doi-asserted-by":"crossref","DOI":"10.3389\/fmed.2021.723904","article-title":"Effect of nebulized Amphotericin B in critically ill patients with respiratory Candida spp. de-colonization: a retrospective analysis","volume":"8","author":"Du","year":"2021","journal-title":"Front Med"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib136","first-page":"536","article-title":"Candida spp. isolation from critically ill patients' respiratory tract","volume":"11","author":"Ioannou","year":"2021","journal-title":"Does antifungal treatment affect survival? Germs"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib137","doi-asserted-by":"crossref","DOI":"10.1111\/nicc.13289","article-title":"Random forest analysis of ICU nurses' knowledge, attitudes and practices in oral care for ventilator-associated pneumonia prevention","volume":"30","author":"SuWen","year":"2025","journal-title":"Nurs Crit Care"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib138","doi-asserted-by":"crossref","first-page":"230","DOI":"10.1007\/s00134-005-0014-4","article-title":"Oral care reduces incidence of ventilator-associated pneumonia in ICU populations","volume":"32","author":"Mori","year":"2006","journal-title":"Intensive Care Med"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib139","doi-asserted-by":"crossref","DOI":"10.1111\/tid.13692","article-title":"Perioperative anidulafungin combined with triazole prophylaxis for the prevention of early invasive candidiasis in lung transplant recipients","volume":"23","author":"Sartain","year":"2021","journal-title":"Transpl Infect Dis"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib140","doi-asserted-by":"crossref","DOI":"10.1111\/tid.13559","article-title":"Oropharyngeal candidiasis outcomes in renal transplant recipients receiving nystatin versus no antifungal prophylaxis","volume":"23","author":"Ky","year":"2021","journal-title":"Transpl Infect Dis"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib141","doi-asserted-by":"crossref","DOI":"10.1128\/aac.01279-23","article-title":"Limitations of antifungal prophylaxis in preventing invasive Candida surgical site infections after liver transplant surgery","volume":"68","author":"Carugati","year":"2024","journal-title":"Antimicrob Agents Chemother"},{"issue":"2","key":"10.1016\/j.jmii.2026.03.003_bib142","doi-asserted-by":"crossref","first-page":"272","DOI":"10.3390\/jof9020272","article-title":"Invasive fungal breakthrough infections under targeted echinocandin prophylaxis in high-risk liver transplant recipients","volume":"9","author":"Breitkopf","year":"2023","journal-title":"J Fungi"},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib143","doi-asserted-by":"crossref","first-page":"588","DOI":"10.3390\/jof7080588","article-title":"Epidemiology of invasive fungal diseases in patients with hematologic malignancies and hematopoietic cell transplantation recipients managed with an antifungal diagnostic driven approach","volume":"7","author":"Bergamasco","year":"2021","journal-title":"J Fungi"},{"issue":"7","key":"10.1016\/j.jmii.2026.03.003_bib144","doi-asserted-by":"crossref","first-page":"2107","DOI":"10.3390\/cancers15072107","article-title":"New perspectives on primary prophylaxis of invasive fungal infection in children undergoing hematopoietic stem cell transplantation: a 10-year retrospective cohort study","volume":"15","author":"Ricard","year":"2023","journal-title":"Cancers"},{"issue":"1","key":"10.1016\/j.jmii.2026.03.003_bib145","doi-asserted-by":"crossref","first-page":"70","DOI":"10.1016\/j.ajic.2024.08.027","article-title":"Analysis of an expanded admission screening protocol for Candida auris at a New York City hospital","volume":"53","author":"Cheng","year":"2025","journal-title":"Am J Infect Control"},{"issue":"10","key":"10.1016\/j.jmii.2026.03.003_bib146","doi-asserted-by":"crossref","first-page":"674","DOI":"10.3390\/jof10100674","article-title":"Predicting fungemia in the ICU: unveiling the value of weekly fungal surveillance and yeast colonisation monitoring","volume":"10","author":"Su\u00e1rez-Urquiza","year":"2024","journal-title":"J Fungi"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib147","first-page":"708","article-title":"Is routine screening for Candida auris necessary in ICU?","volume":"16","author":"Sachu","year":"2024","journal-title":"Iran J Microbiol"},{"issue":"3","key":"10.1016\/j.jmii.2026.03.003_bib148","doi-asserted-by":"crossref","DOI":"10.1016\/j.jiph.2025.102659","article-title":"Screening of Candida auris upon admission to an intensive care unit in the United Arab Emirates","volume":"18","author":"Park","year":"2025","journal-title":"J Infect Public Health"},{"issue":"21","key":"10.1016\/j.jmii.2026.03.003_bib149","doi-asserted-by":"crossref","first-page":"2323","DOI":"10.1001\/jama.2009.1754","article-title":"International study of the prevalence and outcomes of infection in intensive care units","volume":"302","author":"Vincent","year":"2009","journal-title":"JAMA"},{"issue":"6","key":"10.1016\/j.jmii.2026.03.003_bib150","doi-asserted-by":"crossref","first-page":"751","DOI":"10.1016\/S1473-3099(22)00872-6","article-title":"Guideline adherence and survival of patients with candidaemia in Europe: results from the ECMM Candida III multinational European observational cohort study","volume":"23","author":"Hoenigl","year":"2023","journal-title":"Lancet Infect Dis"},{"key":"10.1016\/j.jmii.2026.03.003_bib151","article-title":"Prognostic factors of Candida spp. bloodstream infection in adults: a nine-year retrospective cohort study across tertiary hospitals in Brazil and Spain","volume":"6","author":"Agnelli","year":"2022","journal-title":"Lancet Reg Health, Am"},{"key":"10.1016\/j.jmii.2026.03.003_bib152","unstructured":"Centers for Disease Control and Prevention (CDC), Infection control guidance: candida auris. https:\/\/www.cdc.gov\/candida-auris\/hcp\/infection-control\/. [Accessed 15 October 2025]."},{"issue":"8","key":"10.1016\/j.jmii.2026.03.003_bib153","doi-asserted-by":"crossref","first-page":"878","DOI":"10.1016\/j.ajic.2024.03.012","article-title":"Candida auris outbreak at a tertiary care hospital during the COVID-19 pandemic","volume":"52","author":"Dbeibo","year":"2024","journal-title":"Am J Infect Control"},{"issue":"5","key":"10.1016\/j.jmii.2026.03.003_bib154","doi-asserted-by":"crossref","first-page":"390","DOI":"10.1590\/S1413-86702008000500009","article-title":"An outbreak of Candida spp. bloodstream infection in a tertiary care center in Bogot\u00e1, Colombia","volume":"12","author":"DiazGranados","year":"2008","journal-title":"Braz J Infect Dis"},{"issue":"Suppl 1","key":"10.1016\/j.jmii.2026.03.003_bib155","first-page":"S711","article-title":"Epidemiological analysis and successful management of A Candida auris outbreak in A secondary care Hospital setting in Saudi Arabia; an outbreak report","volume":"34","author":"Fathima","year":"2022","journal-title":"J Ayub Med Coll Abbottabad"},{"key":"10.1016\/j.jmii.2026.03.003_bib157","article-title":"Candida auris: diagnostic challenges and outbreak control in paediatric and neonatal intensive care unit in a tertiary care hospital - the first of many in Eastern India","volume":"28","author":"Anirima","year":"2024","journal-title":"Clin Epidemiol Glob Health"},{"key":"10.1016\/j.jmii.2026.03.003_bib159","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1016\/j.jhin.2023.10.017","article-title":"Intrahospital transmission and infection control of Candida auris originating from a severely infected COVID-19 patient transferred abroad","volume":"143","author":"Lee","year":"2024","journal-title":"J Hosp Infect"},{"issue":"14","key":"10.1016\/j.jmii.2026.03.003_bib161","doi-asserted-by":"crossref","first-page":"1322","DOI":"10.1056\/NEJMoa1714373","article-title":"A Candida auris outbreak and its control in an intensive care setting","volume":"379","author":"Eyre","year":"2018","journal-title":"N Engl J Med"},{"issue":"4","key":"10.1016\/j.jmii.2026.03.003_bib162","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1097\/CCM.0000000000004843","article-title":"Cloth lanyards as a source of intermittent transmission of Candida auris on an ICU","volume":"49","author":"Patterson","year":"2021","journal-title":"Crit Care Med"}],"container-title":["Journal of Microbiology, Immunology and Infection"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1684118226000368?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1684118226000368?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,8,6]],"date-time":"2026-08-06T00:48:15Z","timestamp":1785977295000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1684118226000368"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,8]]},"references-count":158,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2026,8]]}},"alternative-id":["S1684118226000368"],"URL":"https:\/\/doi.org\/10.1016\/j.jmii.2026.03.003","relation":{},"ISSN":["1684-1182"],"issn-type":[{"value":"1684-1182","type":"print"}],"subject":[],"published":{"date-parts":[[2026,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"The 2025 guidance on the surveillance and control of Candida infections: Recommendations from the China invasive fungal surveillance net (CHIF-NET) study group","name":"articletitle","label":"Article Title"},{"value":"Journal of Microbiology, Immunology and Infection","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jmii.2026.03.003","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 Taiwan Society of Microbiology. Published by Elsevier Taiwan LLC.","name":"copyright","label":"Copyright"}]}}