{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,24]],"date-time":"2025-12-24T12:41:40Z","timestamp":1766580100107,"version":"build-2065373602"},"reference-count":32,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T00:00:00Z","timestamp":1675209600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T00:00:00Z","timestamp":1675209600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,11,21]],"date-time":"2022-11-21T00:00:00Z","timestamp":1668988800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004196","name":"Odense Universitetshospital","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004196","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100006356","name":"Syddansk Universitet","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100006356","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Proteomics"],"published-print":{"date-parts":[[2023,2]]},"DOI":"10.1016\/j.jprot.2022.104775","type":"journal-article","created":{"date-parts":[[2022,11,19]],"date-time":"2022-11-19T11:18:33Z","timestamp":1668856713000},"page":"104775","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"special_numbering":"C","title":["A targeted multiplex mass spectrometry method for quantitation of abundant matrix and cellular proteins in formalin-fixed paraffin embedded arterial tissue"],"prefix":"10.1016","volume":"272","author":[{"given":"Anne-Sofie Faarvang","family":"Thorsen","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lars Peter Sch\u00f8dt","family":"Riber","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lars Melholt","family":"Rasmussen","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Overgaard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"issue":"7156","key":"10.1016\/j.jprot.2022.104775_bb0005","doi-asserted-by":"crossref","first-page":"959","DOI":"10.1038\/448959a","article-title":"Tissue preparation: Tissue issues","volume":"448","author":"Blow","year":"2007","journal-title":"Nature."},{"issue":"5","key":"10.1016\/j.jprot.2022.104775_bb0010","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1080\/10520295.2018.1446101","article-title":"Factors that drive the increasing use of FFPE tissue in basic and translational cancer research","volume":"93","author":"Gaffney","year":"2018","journal-title":"Biotech. Histochem."},{"issue":"4","key":"10.1016\/j.jprot.2022.104775_bb0015","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0211400","article-title":"Use of FFPE-derived DNA in next generation sequencing: DNA extraction methods","volume":"14","author":"McDonough","year":"2019","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.jprot.2022.104775_bb0020","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1002\/path.5420","article-title":"A streamlined mass spectrometry-based proteomics workflow for large-scale FFPE tissue analysis","volume":"251","author":"Coscia","year":"2020","journal-title":"J. Pathol."},{"issue":"10","key":"10.1016\/j.jprot.2022.104775_bb0025","doi-asserted-by":"crossref","first-page":"2786","DOI":"10.1074\/mcp.O115.049049","article-title":"Quantification of HER2 by targeted mass spectrometry in formalin-fixed paraffin-embedded (FFPE) breast cancer tissues","volume":"14","author":"Steiner","year":"2015","journal-title":"Mol. Cell. Proteomics: MCP"},{"key":"10.1016\/j.jprot.2022.104775_bb0030","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1007\/978-1-59745-188-8_11","article-title":"Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays","volume":"439","author":"Bibikova","year":"2008","journal-title":"Methods Mol. Biol."},{"issue":"2","key":"10.1016\/j.jprot.2022.104775_bb0035","doi-asserted-by":"crossref","first-page":"214","DOI":"10.1002\/pros.20863","article-title":"Genome-wide expression analysis of recently processed formalin-fixed paraffin embedded human prostate tissues","volume":"69","author":"Dunn","year":"2009","journal-title":"Prostate"},{"issue":"3","key":"10.1016\/j.jprot.2022.104775_bb0040","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1007\/s00418-008-0479-7","article-title":"RNA expression analysis from formalin fixed paraffin embedded tissues","volume":"130","author":"Farragher","year":"2008","journal-title":"Histochem. Cell Biol."},{"issue":"11","key":"10.1016\/j.jprot.2022.104775_bb0045","doi-asserted-by":"crossref","first-page":"1405","DOI":"10.1038\/labinvest.3700343","article-title":"Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS\/MS","volume":"85","author":"Crockett","year":"2005","journal-title":"Lab. Investig.; J. Tech. Methods Pathol."},{"issue":"2","key":"10.1016\/j.jprot.2022.104775_bb0050","first-page":"97","article-title":"Use of formalin-fixed, paraffin-embedded biopsy or autopsy material for electron microscopy","volume":"7","author":"Hultquist","year":"1972","journal-title":"Pathol. Eur."},{"issue":"3","key":"10.1016\/j.jprot.2022.104775_bb0055","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1002\/path.1711170306","article-title":"The immunohistochemical identification of hormone-producing cells in formalin-fixed, paraffin-embedded human pituitary tissue","volume":"117","author":"Kruseman","year":"1975","journal-title":"J. Pathol."},{"issue":"3","key":"10.1016\/j.jprot.2022.104775_bb0060","doi-asserted-by":"crossref","first-page":"288","DOI":"10.1016\/S0005-8165(77)80084-X","article-title":"Immunofluorescence studies on formalin-fixed and paraffin-embedded material","volume":"161","author":"Witting","year":"1977","journal-title":"Beitr Pathol."},{"issue":"1","key":"10.1016\/j.jprot.2022.104775_bb0065","doi-asserted-by":"crossref","first-page":"36","DOI":"10.5858\/2003-127-36-MVFB","article-title":"Male versus female breast cancers. A population-based comparative immunohistochemical analysis","volume":"127","author":"Muir","year":"2003","journal-title":"Arch. Pathol. Lab. Med."},{"issue":"2","key":"10.1016\/j.jprot.2022.104775_bb0070","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1158\/1078-0432.CCR-16-0680","article-title":"Practical and robust identification of molecular subtypes in colorectal cancer by immunohistochemistry","volume":"23","author":"Trinh","year":"2017","journal-title":"Clin. Cancer Res."},{"issue":"1","key":"10.1016\/j.jprot.2022.104775_bb0075","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1007\/s00418-015-1316-4","article-title":"Factors affecting immunoreactivity in long-term storage of formalin-fixed paraffin-embedded tissue sections","volume":"144","author":"Grillo","year":"2015","journal-title":"Histochem. Cell Biol."},{"key":"10.1016\/j.jprot.2022.104775_bb0080","doi-asserted-by":"crossref","DOI":"10.3389\/fimmu.2021.642891","article-title":"Elevated fibronectin levels in profibrotic CD14(+) monocytes and CD14(+) macrophages in systemic sclerosis","volume":"12","author":"Rudnik","year":"2021","journal-title":"Front. Immunol."},{"issue":"1","key":"10.1016\/j.jprot.2022.104775_bb0085","doi-asserted-by":"crossref","first-page":"85","DOI":"10.47162\/RJME.62.1.08","article-title":"Assessment of the aortic wall histological changes with ageing","volume":"62","author":"Albu","year":"2021","journal-title":"Romanian J. Morphol. Embryol."},{"issue":"4","key":"10.1016\/j.jprot.2022.104775_bb0090","doi-asserted-by":"crossref","first-page":"H724","DOI":"10.1152\/ajpheart.00512.2017","article-title":"Guidelines for authors and reviewers on antibody use in physiology studies","volume":"314","author":"Brooks","year":"2018","journal-title":"Am. J. Physiol. Heart Circ. Physiol."},{"issue":"6","key":"10.1016\/j.jprot.2022.104775_bb0095","doi-asserted-by":"crossref","first-page":"1607","DOI":"10.1002\/cncr.26450","article-title":"Molecular classification of nonsmall cell lung cancer using a 4-protein quantitative assay","volume":"118","author":"Anagnostou","year":"2012","journal-title":"Cancer."},{"issue":"10","key":"10.1016\/j.jprot.2022.104775_bb0100","doi-asserted-by":"crossref","first-page":"1339","DOI":"10.1093\/clinchem\/hvaa178","article-title":"Clinical application of multiple reaction monitoring-mass spectrometry to human epidermal growth factor receptor 2 measurements as a potential diagnostic tool for breast cancer therapy","volume":"66","author":"Do","year":"2020","journal-title":"Clin. Chem."},{"issue":"8","key":"10.1016\/j.jprot.2022.104775_bb0105","doi-asserted-by":"crossref","first-page":"2717","DOI":"10.1021\/acs.jproteome.6b00245","article-title":"Optimized protocol for quantitative multiple reaction monitoring-based proteomic analysis of formalin-fixed, Paraffin-Embedded Tissues","volume":"15","author":"Kennedy","year":"2016","journal-title":"J. Proteome Res."},{"issue":"17","key":"10.1016\/j.jprot.2022.104775_bb0110","doi-asserted-by":"crossref","first-page":"3108","DOI":"10.1002\/pmic.201000082","article-title":"mTRAQ-based quantification of potential endometrial carcinoma biomarkers from archived formalin-fixed paraffin-embedded tissues","volume":"10","author":"DeSouza","year":"2010","journal-title":"Proteomics."},{"issue":"2","key":"10.1016\/j.jprot.2022.104775_bb0115","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1093\/bfgp\/eln056","article-title":"Current affairs in quantitative targeted proteomics: multiple reaction monitoring-mass spectrometry","volume":"8","author":"Yocum","year":"2009","journal-title":"Brief. Funct. Genomics Proteomics"},{"issue":"Suppl. 16","key":"10.1016\/j.jprot.2022.104775_bb0120","doi-asserted-by":"crossref","first-page":"S9","DOI":"10.1186\/1471-2105-13-S16-S9","article-title":"Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics","volume":"13 Suppl 16","author":"Mani","year":"2012","journal-title":"BMC Bioinforma."},{"issue":"5","key":"10.1016\/j.jprot.2022.104775_bb0125","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1080\/14789450.2017.1322904","article-title":"Clinical applications of quantitative proteomics using targeted and untargeted data-independent acquisition techniques","volume":"14","author":"Meyer","year":"2017","journal-title":"Expert Rev. Proteomics"},{"issue":"6","key":"10.1016\/j.jprot.2022.104775_bb0130","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1080\/14737159.2019.1615448","article-title":"Applications of multiple reaction monitoring targeted proteomics assays in human plasma","volume":"19","author":"Kontostathi","year":"2019","journal-title":"Expert. Rev. Mol. Diagn."},{"key":"10.1016\/j.jprot.2022.104775_bb0135","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/j.copbio.2017.12.011","article-title":"The building blocks of successful translation of proteomics to the clinic","volume":"51","author":"Kearney","year":"2018","journal-title":"Curr. Opin. Biotechnol."},{"key":"10.1016\/j.jprot.2022.104775_bb0140","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1016\/j.atherosclerosis.2016.02.022","article-title":"Smoking is associated with lower amounts of arterial type I collagen and decorin","volume":"247","author":"Faarvang","year":"2016","journal-title":"Atherosclerosis."},{"issue":"5","key":"10.1016\/j.jprot.2022.104775_bb0145","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1161\/CIRCGENETICS.115.001165","article-title":"Quantitative proteome analysis reveals increased content of basement membrane proteins in arteries from patients with type 2 diabetes and lower levels among metformin users","volume":"8","author":"Preil","year":"2015","journal-title":"Circ. Cardiovasc. Genet."},{"issue":"Database issue","key":"10.1016\/j.jprot.2022.104775_bb0150","article-title":"UniProt: a hub for protein information","volume":"43","year":"2015","journal-title":"Nucleic Acids Res."},{"issue":"11","key":"10.1016\/j.jprot.2022.104775_bb0155","doi-asserted-by":"crossref","first-page":"2284","DOI":"10.1074\/mcp.TIR118.000853","article-title":"A novel LC system embeds analytes in pre-formed gradients for rapid, ultra-robust proteomics","volume":"17","author":"Bache","year":"2018","journal-title":"Mol. Cell. Proteomics: MCP"},{"issue":"3","key":"10.1016\/j.jprot.2022.104775_bb0160","doi-asserted-by":"crossref","first-page":"H610","DOI":"10.1152\/ajpheart.00070.2018","article-title":"A role for collagen type IV in cardiovascular disease?","volume":"315","author":"Steffensen","year":"2018","journal-title":"Am. J. Physiol. Heart Circ. Physiol."}],"container-title":["Journal of Proteomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1874391922002998?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1874391922002998?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T12:14:59Z","timestamp":1761740099000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1874391922002998"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2023,2]]},"references-count":32,"alternative-id":["S1874391922002998"],"URL":"https:\/\/doi.org\/10.1016\/j.jprot.2022.104775","relation":{},"ISSN":["1874-3919"],"issn-type":[{"type":"print","value":"1874-3919"}],"subject":[],"published":{"date-parts":[[2023,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"A targeted multiplex mass spectrometry method for quantitation of abundant matrix and cellular proteins in formalin-fixed paraffin embedded arterial tissue","name":"articletitle","label":"Article Title"},{"value":"Journal of Proteomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jprot.2022.104775","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 The Authors. Published by Elsevier B.V.","name":"copyright","label":"Copyright"}],"article-number":"104775"}}