{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,5]],"date-time":"2026-09-05T05:50:03Z","timestamp":1788587403071,"version":"build-2803163510"},"reference-count":95,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2024,7,1]],"date-time":"2024-07-01T00:00:00Z","timestamp":1719792000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100002701","name":"Ministry of Education","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002701","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100018895","name":"National Institute of Technology, Raipur","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100018895","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Proteomics"],"published-print":{"date-parts":[[2024,7]]},"DOI":"10.1016\/j.jprot.2024.105228","type":"journal-article","created":{"date-parts":[[2024,6,13]],"date-time":"2024-06-13T17:34:02Z","timestamp":1718300042000},"page":"105228","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":5,"special_numbering":"C","title":["LC-MS\/MS profiling and analysis of Bacillus licheniformis extracellular proteins for antifungal potential against Candida albicans"],"prefix":"10.1016","volume":"303","author":[{"given":"Jyoti Sankar","family":"Prusty","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Awanish","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0005","doi-asserted-by":"crossref","first-page":"1","DOI":"10.3109\/10408410903241444","article-title":"Epidemiology of invasive mycoses in North America","volume":"36","author":"Pfaller","year":"2010","journal-title":"Crit. Rev. Microbiol."},{"issue":"3","key":"10.1016\/j.jprot.2024.105228_bb0010","doi-asserted-by":"crossref","DOI":"10.3390\/pathogens11030335","article-title":"Oral cavity and Candida albicans: colonisation to the development of infection","volume":"11","author":"Patel","year":"2022","journal-title":"Pathogens"},{"issue":"Pt A","key":"10.1016\/j.jprot.2024.105228_bb0015","doi-asserted-by":"crossref","first-page":"1212","DOI":"10.1016\/j.ijbiomac.2017.09.102","article-title":"Deciphering the role of sodium lignosulfonate against Candida spp. as persuasive anticandidal agent","volume":"107","author":"Jha","year":"2018","journal-title":"Int. J. Biol. Macromol."},{"issue":"6082","key":"10.1016\/j.jprot.2024.105228_bb0020","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1126\/science.1222236","article-title":"Tackling human fungal infections","volume":"336","author":"Brown","year":"2012","journal-title":"Science"},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0025","article-title":"Candida albicans: virulence factors, pathogenesis, and ways to diagnose and control its infection","volume":"13","author":"dos Santos Silva","year":"2024","journal-title":"Res., Soc. Developm."},{"issue":"3","key":"10.1016\/j.jprot.2024.105228_bb0030","doi-asserted-by":"crossref","first-page":"253","DOI":"10.1016\/j.mycmed.2019.07.004","article-title":"Insights on the anticandidal activity of non-antifungal drugs","volume":"29","author":"Moraes","year":"2019","journal-title":"J. Mycol. M\u00e9dicale"},{"issue":"11","key":"10.1016\/j.jprot.2024.105228_bb0035","doi-asserted-by":"crossref","first-page":"1933","DOI":"10.1128\/EC.00254-07","article-title":"Multidrug resistance in fungi","volume":"6","author":"Gulshan","year":"2007","journal-title":"Eukaryot. Cell"},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0040","doi-asserted-by":"crossref","first-page":"310","DOI":"10.1016\/j.micinf.2016.01.002","article-title":"Candida albicans biofilms: development, regulation, and molecular mechanisms","volume":"18","author":"Gulati","year":"2016","journal-title":"Microbes Infect."},{"issue":"12","key":"10.1016\/j.jprot.2024.105228_bb0045","doi-asserted-by":"crossref","first-page":"1387","DOI":"10.1016\/j.ajic.2018.05.015","article-title":"Factors and outcomes associated with candidemia caused by non-albicans Candida spp versus Candida albicans in children","volume":"46","author":"Lee","year":"2018","journal-title":"Am. J. Infect. Control"},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0050","doi-asserted-by":"crossref","first-page":"112","DOI":"10.1038\/nrmicro2711","article-title":"Candida albicans morphogenesis and host defence: discriminating invasion from colonization","volume":"10","author":"Gow","year":"2012","journal-title":"Nat. Rev. Microbiol."},{"issue":"7","key":"10.1016\/j.jprot.2024.105228_bb0055","doi-asserted-by":"crossref","first-page":"327","DOI":"10.1016\/S0966-842X(01)02094-7","article-title":"Virulence factors of Candida albicans","volume":"9","author":"Calderone","year":"2001","journal-title":"Trends Microbiol."},{"issue":"19","key":"10.1016\/j.jprot.2024.105228_bb0060","doi-asserted-by":"crossref","first-page":"2951","DOI":"10.3390\/foods11192951","article-title":"Targeting virulence factors of Candida albicans with natural products","volume":"11","author":"Bu","year":"2022","journal-title":"Foods"},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0065","doi-asserted-by":"crossref","first-page":"328","DOI":"10.3109\/1040841X.2011.585606","article-title":"Oral candidosis\u2013clinical challenges of a biofilm disease","volume":"37","author":"Rautemaa","year":"2011","journal-title":"Crit. Rev. Microbiol."},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0070","doi-asserted-by":"crossref","first-page":"710","DOI":"10.1080\/07391102.2023.2196703","article-title":"Revealing anti-fungal potential of plant-derived bioactive therapeutics in targeting secreted aspartyl proteinase (SAP) of Candida albicans: a molecular dynamics approach","volume":"42","author":"Dhanasekaran","year":"2024","journal-title":"J. Biomol. Struct. Dyn."},{"issue":"8","key":"10.1016\/j.jprot.2024.105228_bb0075","doi-asserted-by":"crossref","first-page":"892","DOI":"10.3109\/13693786.2013.824623","article-title":"Expression of SAP5 and SAP9 in Candida albicans biofilms: comparison of bloodstream isolates with isolates from other sources","volume":"51","author":"Joo","year":"2013","journal-title":"Med. Mycol."},{"key":"10.1016\/j.jprot.2024.105228_bb0080","doi-asserted-by":"crossref","first-page":"e01514","DOI":"10.1128\/mBio.01514-16","article-title":"Global identification of biofilm-specific proteolysis in Candida albicans","volume":"7","author":"Winter","year":"2016","journal-title":"mBio"},{"issue":"10","key":"10.1016\/j.jprot.2024.105228_bb0085","doi-asserted-by":"crossref","first-page":"1797","DOI":"10.1007\/s10096-020-03912-w","article-title":"Mechanism of Candida pathogenesis: revisiting the vital drivers","volume":"39","author":"Mba","year":"2020","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"key":"10.1016\/j.jprot.2024.105228_bb0090","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1016\/j.ejmech.2018.03.027","article-title":"Structure-activity relationship studies of ultra-short peptides with potent activities against fluconazole-resistant Candida albicans","volume":"150","author":"Ng","year":"2018","journal-title":"Eur. J. Med. Chem."},{"key":"10.1016\/j.jprot.2024.105228_bb0095","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1007\/s12602-016-9212-3","article-title":"Sequential and structural aspects of antifungal peptides from animals, bacteria and fungi based on bioinformatics tools","volume":"8","author":"Neelabh","year":"2016","journal-title":"Probiot. Antimicrobi. Proteins"},{"issue":"22","key":"10.1016\/j.jprot.2024.105228_bb0100","doi-asserted-by":"crossref","first-page":"2955","DOI":"10.4155\/fmc-2018-0479","article-title":"Anticandidal agent for multiple targets: the next paradigm in the discovery of proficient therapeutics\/overcoming drug resistance","volume":"11","author":"Jha","year":"2019","journal-title":"Future Med. Chem."},{"key":"10.1016\/j.jprot.2024.105228_bb0105","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2016.00194","article-title":"Antimicrobial peptides: an emerging category of therapeutic agents","volume":"6","author":"Mahlapuu","year":"2016","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"10.1016\/j.jprot.2024.105228_bb0110","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1016\/j.micres.2018.08.012","article-title":"Antifungal activity of spider venom-derived peptide lycosin-I against Candida tropicalis","volume":"216","author":"Tan","year":"2018","journal-title":"Microbiol. Res."},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0115","doi-asserted-by":"crossref","first-page":"218","DOI":"10.1016\/j.jip.2008.02.008","article-title":"Detection of genes encoding antimicrobial peptides in Mexican strains of Trichoplusia ni (H\u00fcbner) exposed to Bacillus thuringiensis","volume":"98","author":"Tamez-Guerra","year":"2008","journal-title":"J. Invertebr. Pathol."},{"issue":"18","key":"10.1016\/j.jprot.2024.105228_bb0120","doi-asserted-by":"crossref","first-page":"3621","DOI":"10.1021\/bi200123w","article-title":"Solution structure of LCI, a novel antimicrobial peptide from Bacillus subtilis","volume":"50","author":"Gong","year":"2011","journal-title":"Biochemistry"},{"issue":"8","key":"10.1016\/j.jprot.2024.105228_bb0125","doi-asserted-by":"crossref","first-page":"2633","DOI":"10.1128\/AEM.03751-13","article-title":"Cerecidins, novel lantibiotics from Bacillus cereus with potent antimicrobial activity","volume":"80","author":"Wang","year":"2014","journal-title":"Appl. Environ. Microbiol."},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0130","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1111\/j.1472-765X.2004.01478.x","article-title":"Bacteriocin-like substance production by Bacillus licheniformis strain P40","volume":"38","author":"Cladera-Olivera","year":"2004","journal-title":"Lett. Appl. Microbiol."},{"key":"10.1016\/j.jprot.2024.105228_bb0135","doi-asserted-by":"crossref","first-page":"9525","DOI":"10.1007\/s00253-013-5198-x","article-title":"Lipopeptides, a novel protein, and volatile compounds contribute to the antifungal activity of the biocontrol agent Bacillus atrophaeus CAB-1","volume":"97","author":"Zhang","year":"2013","journal-title":"Appl. Microbiol. Biotechnol."},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0140","doi-asserted-by":"crossref","first-page":"609","DOI":"10.1080\/07388551.2021.1873239","article-title":"Biotechnological applications of Bacillus licheniformis","volume":"41","author":"Muras","year":"2021","journal-title":"Crit. Rev. Biotechnol."},{"issue":"12","key":"10.1016\/j.jprot.2024.105228_bb0145","first-page":"2120","article-title":"Identification and quantification of lichenysin\u2013a possible source of food poisoning","volume":"32","author":"R\u00f8nning","year":"2015","journal-title":"Food Additiv. & Contamin.: Part A"},{"key":"10.1016\/j.jprot.2024.105228_bb0150","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1134\/S0003683820040146","article-title":"Extracellular thermostable laccase-like enzymes from Bacillus licheniformis strains: production, purification and characterization","volume":"56","author":"Sharma","year":"2020","journal-title":"Appl. Biochem. Microbiol."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0155","article-title":"A rapid isolation method of extracellular proteins produced by pseudomonad strains","volume":"17","author":"Sharma","year":"2017","journal-title":"Appl. Sci. Report."},{"key":"10.1016\/j.jprot.2024.105228_bb0160","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1016\/j.mimet.2015.08.008","article-title":"Improved proteomic analysis following trichloroacetic acid extraction of Bacillus anthracis spore proteins","volume":"118","author":"Kaiser","year":"2015","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.jprot.2024.105228_bb0165","doi-asserted-by":"crossref","first-page":"104","DOI":"10.3389\/fcimb.2019.00104","article-title":"Proteomic analysis and virulence assessment of Granulicatella adiacens secretome","volume":"9","author":"Karched","year":"2019","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0170","doi-asserted-by":"crossref","first-page":"e04008","DOI":"10.1128\/spectrum.04008-23","article-title":"Antifungal potential of lipopeptides produced by the Bacillus siamensis Sh420 strain against fusarium graminearum","volume":"12","author":"Hussain","year":"2024","journal-title":"Microbiol. Spectr."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0175","doi-asserted-by":"crossref","first-page":"13048","DOI":"10.1038\/s41598-019-47598-3","article-title":"Biological surface properties in extracellular vesicles and their effect on cargo proteins","volume":"9","author":"Santucci","year":"2019","journal-title":"Sci. Rep."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0180","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1074\/jbc.M605463200","article-title":"Localization of the small CAB-like proteins in photosystem II","volume":"282","author":"Yao","year":"2007","journal-title":"J. Biol. Chem."},{"issue":"12","key":"10.1016\/j.jprot.2024.105228_bb0185","doi-asserted-by":"crossref","first-page":"1230","DOI":"10.1080\/10826076.2015.1032419","article-title":"Rapid identification of antibacterial compounds from Turkey berry by HPLC-based metabolomics","volume":"38","author":"Maser","year":"2015","journal-title":"J. Liq. Chromatogr. Relat. Technol."},{"issue":"18","key":"10.1016\/j.jprot.2024.105228_bb0190","doi-asserted-by":"crossref","first-page":"3551","DOI":"10.1002\/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2","article-title":"Probability-based protein identification by searching sequence databases using mass spectrometry data","volume":"20","author":"Perkins","year":"1999","journal-title":"Electrophores.: Int. J."},{"issue":"6","key":"10.1016\/j.jprot.2024.105228_bb0195","doi-asserted-by":"crossref","first-page":"3176","DOI":"10.1021\/pr800982s","article-title":"Accurate and sensitive peptide identification with mascot percolator","volume":"8","author":"Brosch","year":"2009","journal-title":"J. Proteome Res."},{"issue":"10","key":"10.1016\/j.jprot.2024.105228_bb0200","doi-asserted-by":"crossref","first-page":"741","DOI":"10.1038\/nrmicro1494","article-title":"Methods for predicting bacterial protein subcellular localization","volume":"4","author":"Gardy","year":"2006","journal-title":"Nat. Rev. Microbiol."},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0205","doi-asserted-by":"crossref","first-page":"1402","DOI":"10.1110\/ps.03479604","article-title":"Predicting subcellular localization of proteins for gram-negative bacteria by support vector machines based on n-peptide compositions","volume":"13","author":"Yu","year":"2004","journal-title":"Protein Sci."},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0210","doi-asserted-by":"crossref","first-page":"617","DOI":"10.1093\/bioinformatics\/bti057","article-title":"PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis","volume":"21","author":"Gardy","year":"2005","journal-title":"Bioinformatics"},{"issue":"suppl_1","key":"10.1016\/j.jprot.2024.105228_bb0215","doi-asserted-by":"crossref","first-page":"D122","DOI":"10.1093\/nar\/gkh109","article-title":"DBSubLoc: database of protein subcellular localization","volume":"32","author":"Guo","year":"2004","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0220","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1016\/j.jmb.2005.02.025","article-title":"Mimicking cellular sorting improves prediction of subcellular localization","volume":"348","author":"Nair","year":"2005","journal-title":"J. Mol. Biol."},{"issue":"suppl_2","key":"10.1016\/j.jprot.2024.105228_bb0225","doi-asserted-by":"crossref","first-page":"W365","DOI":"10.1093\/nar\/gkh485","article-title":"Proteome analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations","volume":"32","author":"Szafron","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jprot.2024.105228_bb0230","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-6-174","article-title":"Protein subcellular localization prediction for gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines","volume":"6","author":"Wang","year":"2005","journal-title":"BMC Bioinformat."},{"issue":"10","key":"10.1016\/j.jprot.2024.105228_bb0235","doi-asserted-by":"crossref","first-page":"2522","DOI":"10.1093\/bioinformatics\/bti309","article-title":"PSLpred: prediction of subcellular localization of bacterial proteins","volume":"21","author":"Bhasin","year":"2005","journal-title":"Bioinformatics"},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0240","doi-asserted-by":"crossref","first-page":"1535","DOI":"10.1109\/TCBB.2012.89","article-title":"ClassAMP: a prediction tool for classification of antimicrobial peptides","volume":"9","author":"Joseph","year":"2012","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0245","doi-asserted-by":"crossref","first-page":"36","DOI":"10.1002\/pro.3714","article-title":"Collection of antimicrobial peptides database and its derivatives: applications and beyond","volume":"29","author":"Waghu","year":"2020","journal-title":"Protein Sci."},{"issue":"D1","key":"10.1016\/j.jprot.2024.105228_bb0250","doi-asserted-by":"crossref","first-page":"D1087","DOI":"10.1093\/nar\/gkv1278","article-title":"APD3: the antimicrobial peptide database as a tool for research and education","volume":"44","author":"Wang","year":"2016","journal-title":"Nucleic Acids Res."},{"issue":"suppl_1","key":"10.1016\/j.jprot.2024.105228_bb0255","doi-asserted-by":"crossref","first-page":"D933","DOI":"10.1093\/nar\/gkn823","article-title":"APD2: the updated antimicrobial peptide database and its application in peptide design","volume":"37","author":"Wang","year":"2009","journal-title":"Nucleic Acids Res."},{"issue":"suppl_1","key":"10.1016\/j.jprot.2024.105228_bb0260","doi-asserted-by":"crossref","first-page":"D590","DOI":"10.1093\/nar\/gkh025","article-title":"APD: the antimicrobial peptide database","volume":"32","author":"Wang","year":"2004","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0265","doi-asserted-by":"crossref","first-page":"1023","DOI":"10.1002\/elps.11501401163","article-title":"The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences","volume":"14","author":"Bjellqvist","year":"1993","journal-title":"Electrophoresis"},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0270","doi-asserted-by":"crossref","first-page":"529","DOI":"10.1002\/elps.1150150171","article-title":"Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions","volume":"15","author":"Bjellqvist","year":"1994","journal-title":"Electrophoresis"},{"issue":"25","key":"10.1016\/j.jprot.2024.105228_bb0275","doi-asserted-by":"crossref","first-page":"21370","DOI":"10.1021\/acsomega.9b03035","article-title":"Antimicrobial peptide designing and optimization employing large-scale flexibility analysis of protein-peptide fragments","volume":"4","author":"Kumar","year":"2019","journal-title":"ACS Omega"},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0280","doi-asserted-by":"crossref","first-page":"67","DOI":"10.4103\/1735-5362.363597","article-title":"Preparing a database of corrected protein structures important in cell signaling pathways","volume":"18","author":"Hatami","year":"2023","journal-title":"Res. Pharmaceut. Sci."},{"key":"10.1016\/j.jprot.2024.105228_bb0285","series-title":"Structural Basis for the Identification of Short Novel Peptides as Potential GLP1R Agonists Using In Silico Approaches","author":"Sobhia","year":"2022"},{"issue":"8","key":"10.1016\/j.jprot.2024.105228_bb0290","first-page":"1646","article-title":"Antibody structure determination using a combination of homology modeling","volume":"82","author":"Zhu","year":"2014","journal-title":"Energy-Based Refin., Loop Predict., Proteins: Struct., Function, Bioinformat."},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0295","doi-asserted-by":"crossref","first-page":"146","DOI":"10.1111\/j.1747-0285.2007.00483.x","article-title":"New method for fast and accurate binding-site identification and analysis","volume":"69","author":"Halgren","year":"2007","journal-title":"Chem. Biol. Drug Des."},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0300","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1021\/ci800324m","article-title":"Identifying and characterizing binding sites and assessing druggability","volume":"49","author":"Halgren","year":"2009","journal-title":"J. Chem. Inf. Model."},{"issue":"9","key":"10.1016\/j.jprot.2024.105228_bb0305","doi-asserted-by":"crossref","first-page":"4217","DOI":"10.1529\/biophysj.108.135814","article-title":"DARS (decoys as the reference state) potentials for protein-protein docking","volume":"95","author":"Chuang","year":"2008","journal-title":"Biophys. J."},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0310","doi-asserted-by":"crossref","first-page":"392","DOI":"10.1002\/prot.21117","article-title":"PIPER: an FFT-based protein docking program with pairwise potentials","volume":"65","author":"Kozakov","year":"2006","journal-title":"Proteins: Struct., Funct., Bioinformati."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0315","first-page":"26","article-title":"In silico analysis for metalloenzyme-protein interactions applied to MMP8-fibronectin 1 and MMP12-factor XII","volume":"1","author":"Gonz\u00e1lez-Esparragoza","year":"2023","journal-title":"Life in Silico"},{"key":"10.1016\/j.jprot.2024.105228_bb0320","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2105-8-4","article-title":"VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines","volume":"8","author":"Doytchinova","year":"2007","journal-title":"BMC Bioinformat."},{"issue":"suppl_2","key":"10.1016\/j.jprot.2024.105228_bb0325","doi-asserted-by":"crossref","first-page":"W202","DOI":"10.1093\/nar\/gkl343","article-title":"AlgPred: prediction of allergenic proteins and mapping of IgE epitopes","volume":"34","author":"Saha","year":"2006","journal-title":"Nucleic Acids Res."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0330","doi-asserted-by":"crossref","first-page":"10869","DOI":"10.1038\/s41598-020-67701-3","article-title":"HAPPENN is a novel tool for hemolytic activity prediction for therapeutic peptides which employs neural networks","volume":"10","author":"Timmons","year":"2020","journal-title":"Sci. Rep."},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0335","doi-asserted-by":"crossref","first-page":"1029","DOI":"10.1002\/prot.26198","article-title":"An in silico scientific basis for LL-37 as a therapeutic for Covid-19","volume":"90","author":"Lokhande","year":"2022","journal-title":"Proteins: Struct., Funct., Bioinformati."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0340","first-page":"1","article-title":"The global burden of fungal diseases","volume":"30","author":"Vallabhaneni","year":"2016","journal-title":"Infect. Dis. Clin."},{"issue":"3","key":"10.1016\/j.jprot.2024.105228_bb0345","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1021\/np200906s","article-title":"Natural products as sources of new drugs over the 30 years from 1981 to 2010","volume":"75","author":"Newman","year":"2012","journal-title":"J. Nat. Prod."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0350","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1016\/j.cbpa.2010.11.001","article-title":"How to discover new antibiotics: harvesting the parvome","volume":"15","author":"Davies","year":"2011","journal-title":"Curr. Opin. Chem. Biol."},{"issue":"2","key":"10.1016\/j.jprot.2024.105228_bb0355","doi-asserted-by":"crossref","first-page":"111","DOI":"10.1038\/nrd4510","article-title":"The re-emergence of natural products for drug discovery in the genomics era","volume":"14","author":"Harvey","year":"2015","journal-title":"Nat. Rev. Drug Discov."},{"issue":"3","key":"10.1016\/j.jprot.2024.105228_bb0360","doi-asserted-by":"crossref","first-page":"1060","DOI":"10.1002\/jps.21053","article-title":"Research advances in the development of peptide antibiotics","volume":"97","author":"Rossi","year":"2008","journal-title":"J. Pharm. Sci."},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0365","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1016\/j.mib.2008.09.008","article-title":"Therapeutic potential of type a (I) lantibiotics, a group of cationic peptide antibiotics","volume":"11","author":"Smith","year":"2008","journal-title":"Curr. Opin. Microbiol."},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0370","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1038\/ja.2013.138","article-title":"Ribosomally synthesized peptides from natural sources","volume":"67","author":"Singh","year":"2014","journal-title":"J. Antibiot."},{"issue":"9","key":"10.1016\/j.jprot.2024.105228_bb0375","article-title":"Antifungal activity of isolated Bacillus amyloliquefaciens SYBC H47 for the biocontrol of peach gummosis","volume":"11","author":"Li","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.jprot.2024.105228_bb0380","author":"Zain","year":"2018"},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0385","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1002\/mas.21406","article-title":"Lessons in de novo peptide sequencing by tandem mass spectrometry","volume":"34","author":"Medzihradszky","year":"2015","journal-title":"Mass Spectrom. Rev."},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0390","doi-asserted-by":"crossref","first-page":"634","DOI":"10.1002\/pmic.200900459","article-title":"De novo sequencing of peptides by MS\/MS","volume":"10","author":"Seidler","year":"2010","journal-title":"Proteomics"},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0395","doi-asserted-by":"crossref","first-page":"6537","DOI":"10.1038\/srep06537","article-title":"A high-resolution LC-MS-based secondary metabolite fingerprint database of marine bacteria","volume":"4","author":"Lu","year":"2014","journal-title":"Sci. Rep."},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0400","doi-asserted-by":"crossref","first-page":"1797","DOI":"10.1214\/10-AOAS341","article-title":"Liquid chromatography mass spectrometry-based proteomics: biological and technological aspects","volume":"4","author":"Karpievitch","year":"2010","journal-title":"Ann. Appl. Stat."},{"issue":"8","key":"10.1016\/j.jprot.2024.105228_bb0405","doi-asserted-by":"crossref","first-page":"2993","DOI":"10.1021\/pr060629m","article-title":"Identification of differentially secreted biomarkers using LC-MS\/MS in isogenic cell lines representing a progression of breast cancer","volume":"6","author":"Mbeunkui","year":"2007","journal-title":"J. Proteome Res."},{"issue":"7","key":"10.1016\/j.jprot.2024.105228_bb0410","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0041662","article-title":"Proteomics of protein secretion by Aggregatibacter actinomycetemcomitans","volume":"7","author":"Zijnge","year":"2012","journal-title":"PLoS One"},{"issue":"3","key":"10.1016\/j.jprot.2024.105228_bb0415","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0119222","article-title":"Quantitative proteomics reveal distinct protein regulations caused by Aggregatibacter actinomycetemcomitans within subgingival biofilms","volume":"10","author":"Bao","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.jprot.2024.105228_bb0420","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/j.anaerobe.2017.03.002","article-title":"Quantitative proteomic analysis of extracellular matrix extracted from mono-and dual-species biofilms of fusobacterium nucleatum and Porphyromonas gingivalis","volume":"44","author":"Mohammed","year":"2017","journal-title":"Anaerobe"},{"issue":"4","key":"10.1016\/j.jprot.2024.105228_bb0425","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1074\/mcp.RA117.000461","article-title":"Quantitative proteomics of strong and weak biofilm formers of enterococcus faecalis reveals novel regulators of biofilm formation","volume":"17","author":"Suriyanarayanan","year":"2018","journal-title":"Mol. Cell. Proteomics"},{"key":"10.1016\/j.jprot.2024.105228_bb0430","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1007\/s00203-012-0802-5","article-title":"Secretome analysis of Clostridium difficile strains","volume":"194","author":"Boetzkes","year":"2012","journal-title":"Arch. Microbiol."},{"issue":"20","key":"10.1016\/j.jprot.2024.105228_bb0435","doi-asserted-by":"crossref","first-page":"4783","DOI":"10.3390\/molecules25204783","article-title":"Combining experimental data and computational methods for the non-computer specialist","volume":"25","author":"C\u00e1rdenas","year":"2020","journal-title":"Molecules"},{"issue":"6","key":"10.1016\/j.jprot.2024.105228_bb0440","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0099368","article-title":"CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation","volume":"9","author":"Yu","year":"2014","journal-title":"PLoS One"},{"issue":"6","key":"10.1016\/j.jprot.2024.105228_bb0445","doi-asserted-by":"crossref","first-page":"2060080","DOI":"10.1002\/minf.202060080","article-title":"Targeting SARS-CoV-2 spike protein\/ACE2 protein-protein interactions: a computational study","volume":"40","author":"Pirolli","year":"2021","journal-title":"Mol. Inf."},{"key":"10.1016\/j.jprot.2024.105228_bb0450","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1007\/s10989-018-9716-7","article-title":"Peptide similarity search based and virtual screening based strategies to identify small molecules to inhibit CarD\u2013RNAP interaction in M. Tuberculosis","volume":"25","author":"Shanmuga Priya","year":"2019","journal-title":"Int. J. Pept. Res. Ther."},{"issue":"6","key":"10.1016\/j.jprot.2024.105228_bb0455","doi-asserted-by":"crossref","first-page":"1912","DOI":"10.3390\/ijms21061912","article-title":"Antifungal activity of anionic defense peptides: insight into the action of galleria mellonella anionic peptide 2","volume":"21","author":"Sowa-Jasi\u0142ek","year":"2020","journal-title":"Int. J. Mol. Sci."},{"issue":"6","key":"10.1016\/j.jprot.2024.105228_bb0460","doi-asserted-by":"crossref","first-page":"585","DOI":"10.2174\/138920309789630589","article-title":"Anionic antimicrobial peptides from eukaryotic organisms","volume":"10","author":"Harris","year":"2009","journal-title":"Curr. Protein Pept. Sci."},{"issue":"5","key":"10.1016\/j.jprot.2024.105228_bb0465","doi-asserted-by":"crossref","first-page":"M1026","DOI":"10.1111\/1750-3841.12844","article-title":"Novel antifungal peptides produced by Leuconostoc mesenteroides DU15 effectively inhibit growth of aspergillus Niger","volume":"80","author":"Muhialdin","year":"2015","journal-title":"J. Food Sci."},{"issue":"6","key":"10.1016\/j.jprot.2024.105228_bb0470","doi-asserted-by":"crossref","first-page":"600","DOI":"10.2174\/1574893614666191003125540","article-title":"Docking techniques in toxicology: an overview","volume":"15","author":"Gupta","year":"2020","journal-title":"Curr. Bioinforma."},{"issue":"1","key":"10.1016\/j.jprot.2024.105228_bb0475","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1038\/s41598-022-26778-8","article-title":"Analysis of critical protein\u2013protein interactions of SARS-CoV-2 capping and proofreading molecular machineries towards designing dual target inhibitory peptides","volume":"13","author":"Arabi-Jeshvaghani","year":"2023","journal-title":"Sci. Rep."}],"container-title":["Journal of Proteomics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S187439192400160X?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S187439192400160X?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,6,30]],"date-time":"2024-06-30T15:00:48Z","timestamp":1719759648000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S187439192400160X"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,7]]},"references-count":95,"alternative-id":["S187439192400160X"],"URL":"https:\/\/doi.org\/10.1016\/j.jprot.2024.105228","relation":{},"ISSN":["1874-3919"],"issn-type":[{"value":"1874-3919","type":"print"}],"subject":[],"published":{"date-parts":[[2024,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"LC-MS\/MS profiling and analysis of Bacillus licheniformis extracellular proteins for antifungal potential against Candida albicans","name":"articletitle","label":"Article Title"},{"value":"Journal of Proteomics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jprot.2024.105228","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"105228"}}