{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,16]],"date-time":"2024-09-16T13:47:11Z","timestamp":1726494431367},"reference-count":31,"publisher":"Elsevier BV","content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Theoretical Biology"],"published-print":{"date-parts":[[2014,8]]},"DOI":"10.1016\/j.jtbi.2014.03.026","type":"journal-article","created":{"date-parts":[[2014,3,24]],"date-time":"2014-03-24T14:11:45Z","timestamp":1395670305000},"page":"48-53","update-policy":"http:\/\/dx.doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["TIBS: A web database to browse gene expression in irritable bowel syndrome"],"prefix":"10.1016","volume":"354","author":[{"given":"Jing","family":"Yan","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yan","family":"Xu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian","family":"Hu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sammy","family":"Alnajm","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lina","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yin","family":"Lu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhiguang","family":"Sun","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Feng","family":"Cheng","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.jtbi.2014.03.026_bib1","doi-asserted-by":"crossref","first-page":"194","DOI":"10.1016\/j.cgh.2007.11.012","article-title":"Alterations in mucosal immunity identified in the colon of patients with irritable bowel syndrome","volume":"6","author":"Aerssens","year":"2008","journal-title":"Clin. Gastroenterol. Hepatol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib2","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1097\/SGA.0b013e3181b2c920","article-title":"Symptom management for irritable bowel syndrome: a pilot randomized controlled trial of acupuncture\/moxibustion","volume":"32","author":"Anastasi","year":"2009","journal-title":"Gastroenterol. Nurs."},{"key":"10.1016\/j.jtbi.2014.03.026_bib3","doi-asserted-by":"crossref","first-page":"1073","DOI":"10.2165\/00003495-200666080-00004","article-title":"Irritable bowel syndrome: recent and novel therapeutic approaches","volume":"66","author":"Andresen","year":"2006","journal-title":"Drugs"},{"key":"10.1016\/j.jtbi.2014.03.026_bib4","doi-asserted-by":"crossref","first-page":"854","DOI":"10.1016\/j.dld.2009.07.009","article-title":"Current and novel therapeutic options for irritable bowel syndrome management","volume":"41","author":"Camilleri","year":"2009","journal-title":"Dig. Liver Dis."},{"key":"10.1016\/j.jtbi.2014.03.026_bib5","doi-asserted-by":"crossref","first-page":"e68","DOI":"10.1093\/nar\/gks1450","article-title":"iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide composition","volume":"41","author":"Chen","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.jtbi.2014.03.026_bib6","doi-asserted-by":"crossref","first-page":"e47843","DOI":"10.1371\/journal.pone.0047843","article-title":"iNuc-PhysChem: a sequence-based predictor for identifying nucleosomes via physicochemical properties","volume":"7","author":"Chen","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.jtbi.2014.03.026_bib7","doi-asserted-by":"crossref","first-page":"499","DOI":"10.1002\/ddr.21042","article-title":"Exploring the mysteries of traditional chinese medicine systematically by expression microarrays","volume":"73","author":"Cheng","year":"2012","journal-title":"Drug Dev. Res."},{"key":"10.1016\/j.jtbi.2014.03.026_bib8","doi-asserted-by":"crossref","first-page":"25","DOI":"10.2174\/1875036201307010025","volume":"7","author":"Cheng","year":"2013","journal-title":"Bioinformatics Algorithms and Genomics The Open Bioinformatics Journal"},{"key":"10.1016\/j.jtbi.2014.03.026_bib9","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1007\/978-1-60761-580-4_16","article-title":"Multi-gene expression-based statistical approaches to predicting patients\u05f3 clinical outcomes and responses","volume":"620","author":"Cheng","year":"2010","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib10","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1016\/j.jtbi.2011.08.009","article-title":"in vitro transcriptomic prediction of hepatotoxicity for early drug discovery","volume":"290","author":"Cheng","year":"2011","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib11","doi-asserted-by":"crossref","first-page":"715","DOI":"10.1038\/ng2049","article-title":"Using FlyAtlas to identify better Drosophila melanogaster models of human disease","volume":"39","author":"Chintapalli","year":"2007","journal-title":"Nat. Genet."},{"key":"10.1016\/j.jtbi.2014.03.026_bib12","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1006\/abio.1996.0001","article-title":"Prediction of human immunodeficiency virus protease cleavage sites in proteins","volume":"233","author":"Chou","year":"1996","journal-title":"Anal. Biochem."},{"key":"10.1016\/j.jtbi.2014.03.026_bib13","doi-asserted-by":"crossref","first-page":"153","DOI":"10.1038\/nprot.2007.494","article-title":"Cell-PLoc: a package of web servers for predicting subcellular localization of proteins in various organisms","volume":"3","author":"Chou","year":"2008","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.jtbi.2014.03.026_bib14","first-page":"63","article-title":"Review: recent advances in developing web-servers for predicting protein attributes","volume":"2","author":"Chou","year":"2009","journal-title":"Nat. Sci."},{"key":"10.1016\/j.jtbi.2014.03.026_bib15","doi-asserted-by":"crossref","first-page":"629","DOI":"10.1039\/C1MB05420A","article-title":"iLoc-Hum: using the accumulation-label scale to predict subcellular locations of human proteins with both single and multiple sites","volume":"8","author":"Chou","year":"2012","journal-title":"Mol. Biosyst."},{"key":"10.1016\/j.jtbi.2014.03.026_bib16","doi-asserted-by":"crossref","first-page":"G933","DOI":"10.1152\/ajpgi.00198.2004","article-title":"Dual oxidase2 is expressed all along the digestive tract","volume":"288","author":"El Hassani","year":"2005","journal-title":"Am. J. Physiol. Gastrointest. Liver Physiol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib17","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1016\/j.ab.2013.05.024","article-title":"iHSP-PseRAAAC: identifying the heat shock protein families using pseudo reduced amino acid alphabet composition","volume":"442","author":"Feng","year":"2013","journal-title":"Anal. Biochem."},{"key":"10.1016\/j.jtbi.2014.03.026_bib18","doi-asserted-by":"crossref","first-page":"299","DOI":"10.18553\/jmcp.2004.10.4.299","article-title":"The burden of illness of irritable bowel syndrome: current challenges and hope for the future","volume":"10","author":"Hulisz","year":"2004","journal-title":"J. Manag. Care Pharm."},{"key":"10.1016\/j.jtbi.2014.03.026_bib19","doi-asserted-by":"crossref","first-page":"3522","DOI":"10.1242\/jcs.050690","article-title":"DUOX2-derived reactive oxygen species are effectors of NOD2-mediated antibacterial responses","volume":"122","author":"Lipinski","year":"2009","journal-title":"J. Cell Sci."},{"issue":"Suppl 8","key":"10.1016\/j.jtbi.2014.03.026_bib20","first-page":"38","article-title":"Irritable bowel syndrome, anxiety, and depression: what are the links?","volume":"62","author":"Lydiard","year":"2001","journal-title":"J. Clin. Psychiatry"},{"key":"10.1016\/j.jtbi.2014.03.026_bib21","doi-asserted-by":"crossref","first-page":"1746","DOI":"10.3390\/ijms15021746","article-title":"iRSpot-TNCPseAAC: identify recombination spots with trinucleotide composition and pseudo amino acid components","volume":"15","author":"Qiu","year":"2014","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.jtbi.2014.03.026_bib22","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1016\/j.dld.2006.05.009","article-title":"Irritable bowel syndrome: the burden and unmet needs in Europe","volume":"38","author":"Quigley","year":"2006","journal-title":"Dig. Liver Dis."},{"key":"10.1016\/j.jtbi.2014.03.026_bib23","series-title":"NADPH Oxidases: Structure and Function. Molecular Basis of Oxidative Stress: Chemistry, Mechanisms, and Disease Pathogenesis","first-page":"137","author":"Quinn","year":"2013"},{"key":"10.1016\/j.jtbi.2014.03.026_bib24","doi-asserted-by":"crossref","first-page":"315","DOI":"10.1007\/s00281-008-0124-5","article-title":"Nox enzymes and oxidative stress in the immunopathology of the gastrointestinal tract","volume":"30","author":"Rokutan","year":"2008","journal-title":"Semin. Immunopathol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib25","first-page":"1910","article-title":"The epidemiology of irritable bowel syndrome in North America: a systematic review","volume":"97","author":"Saito","year":"2002","journal-title":"Am. J. Gastroenterol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib26","doi-asserted-by":"crossref","first-page":"386","DOI":"10.1016\/j.ab.2007.10.012","article-title":"PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition","volume":"373","author":"Shen","year":"2008","journal-title":"Anal. Biochem."},{"key":"10.1016\/j.jtbi.2014.03.026_bib27","doi-asserted-by":"crossref","first-page":"985","DOI":"10.1136\/gutjnl-2011-301213","article-title":"Identifying and testing candidate genetic polymorphisms in the irritable bowel syndrome (IBS): association with TNFSF15 and TNFalpha","volume":"62","author":"Swan","year":"2013","journal-title":"Gut"},{"key":"10.1016\/j.jtbi.2014.03.026_bib28","doi-asserted-by":"crossref","first-page":"R130","DOI":"10.1186\/gb-2009-10-11-r130","article-title":"BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources","volume":"10","author":"Wu","year":"2009","journal-title":"Genome Biol."},{"key":"10.1016\/j.jtbi.2014.03.026_bib29","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1007\/BF03256235","article-title":"DGEM--a microarray gene expression database for primary human disease tissues","volume":"11","author":"Xia","year":"2007","journal-title":"Mol. Diagn. Ther."},{"key":"10.1016\/j.jtbi.2014.03.026_bib30","doi-asserted-by":"crossref","first-page":"e72234","DOI":"10.1371\/journal.pone.0072234","article-title":"iGPCR-drug: a web server for predicting interaction between GPCRs and drugs in cellular networking","volume":"8","author":"Xiao","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.jtbi.2014.03.026_bib31","doi-asserted-by":"crossref","first-page":"e171","DOI":"10.7717\/peerj.171","article-title":"iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins","volume":"1","author":"Xu","year":"2013","journal-title":"PeerJ"}],"container-title":["Journal of Theoretical Biology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022519314001659?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0022519314001659?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2022,3,30]],"date-time":"2022-03-30T22:01:32Z","timestamp":1648677692000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0022519314001659"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,8]]},"references-count":31,"alternative-id":["S0022519314001659"],"URL":"https:\/\/doi.org\/10.1016\/j.jtbi.2014.03.026","relation":{},"ISSN":["0022-5193"],"issn-type":[{"type":"print","value":"0022-5193"}],"subject":[],"published":{"date-parts":[[2014,8]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"TIBS: A web database to browse gene expression in irritable bowel syndrome","name":"articletitle","label":"Article Title"},{"value":"Journal of Theoretical Biology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.jtbi.2014.03.026","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2014 Elsevier Ltd. All rights reserved.","name":"copyright","label":"Copyright"}]}}