{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T21:14:55Z","timestamp":1761513295145},"reference-count":17,"publisher":"Elsevier BV","issue":"1-2","license":[{"start":{"date-parts":[[2013,9,1]],"date-time":"2013-09-01T00:00:00Z","timestamp":1377993600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Journal of Virological Methods"],"published-print":{"date-parts":[[2013,9]]},"DOI":"10.1016\/j.jviromet.2011.11.030","type":"journal-article","created":{"date-parts":[[2013,5,6]],"date-time":"2013-05-06T10:05:57Z","timestamp":1367834757000},"page":"39-43","source":"Crossref","is-referenced-by-count":8,"title":["Simultaneous and sensitive detection of human immunodeficiency virus type 1 (HIV) drug resistant genotypes by multiplex oligonucleotide ligation assay"],"prefix":"10.1016","volume":"192","author":[{"given":"Giovanina M.","family":"Ellis","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tatyana A.","family":"Vlaskin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andrew","family":"Koth","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Louise E.","family":"Vaz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sandra E.","family":"Dross","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ingrid A.","family":"Beck","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lisa M.","family":"Frenkel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.jviromet.2011.11.030_bib0005","doi-asserted-by":"crossref","first-page":"1413","DOI":"10.1128\/JCM.40.4.1413-1419.2002","article-title":"Rapid and sensitive oligonucleotide ligation assay for detection of mutations in human immunodeficiency virus type 1 associated with high-level resistance to protease inhibitors","volume":"40","author":"Beck","year":"2002","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0010","doi-asserted-by":"crossref","first-page":"418","DOI":"10.1097\/QAI.0b013e31817ed7d7","article-title":"Optimization of the oligonucleotide ligation assay, a rapid and inexpensive test for detection of HIV-1 drug resistance mutations, for non-North American variants","volume":"48","author":"Beck","year":"2008","journal-title":"J. Acquir. Immune Defic. Syndr."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0015","doi-asserted-by":"crossref","first-page":"559","DOI":"10.2144\/000112960","article-title":"Improvements to bead-based oligonucleotide ligation SNP genotyping assays","volume":"45","author":"Bruse","year":"2008","journal-title":"Biotechniques"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0020","doi-asserted-by":"crossref","first-page":"1099","DOI":"10.1089\/aid.2009.0088","article-title":"Intrapartum tenofovir and emtricitabine reduces low-concentration drug resistance selected by single-dose nevirapine for perinatal HIV prevention","volume":"25","author":"Chi","year":"2009","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0025","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1128\/JCM.36.2.569-572.1998","article-title":"Oligonucleotide ligation assay for detecting mutations in the human immunodeficiency virus type 1 pol gene that are associated with resistance to zidovudine, didanosine, and lamivudine","volume":"36","author":"Edelstein","year":"1998","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0030","doi-asserted-by":"crossref","first-page":"3670","DOI":"10.1128\/JCM.42.8.3670-3674.2004","article-title":"Comparison of oligonucleotide ligation assay and consensus sequencing for detection of drug-resistant mutants of human immunodeficiency virus type 1 in peripheral blood mononuclear cells and plasma","volume":"42","author":"Ellis","year":"2004","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0035","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1097\/QAI.0b013e3181a9972c","article-title":"Increased detection of HIV-1 drug resistance at time of diagnosis by testing viral DNA with a sensitive assay","volume":"51","author":"Ellis","year":"2009","journal-title":"J. Acquir. Immune Defic. Syndr."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0040","doi-asserted-by":"crossref","first-page":"911","DOI":"10.1097\/QAD.0b013e328344fedc","article-title":"Analysis of nevirapine resistance in HIV-infected infants who received extended nevirapine or nevirapine\/zidovudine prophylaxis","volume":"25","author":"Fogel","year":"2011","journal-title":"AIDS"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0045","doi-asserted-by":"crossref","first-page":"1397","DOI":"10.1086\/652148","article-title":"Association between detection of HIV-1 DNA resistance mutations by a sensitive assay at initiation of antiretroviral therapy and virologic failure","volume":"50","author":"Jourdain","year":"2010","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0050","doi-asserted-by":"crossref","first-page":"1405","DOI":"10.1086\/652151","article-title":"Nevirapine resistance by timing of HIV type 1 infection in infants treated with single-dose nevirapine","volume":"50","author":"Micek","year":"2010","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0055","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1016\/j.jviromet.2007.06.012","article-title":"Systematic evaluation of allele-specific real-time PCR for the detection of minor HIV-1 variants with pol and env resistance mutations","volume":"146","author":"Paredes","year":"2007","journal-title":"J. Virol. Methods"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0060","doi-asserted-by":"crossref","first-page":"5","DOI":"10.1089\/aid.2010.0030","article-title":"Transmitted HIV type 1 drug resistance among individuals with recent HIV infection in East and Southern Africa","volume":"27","author":"Price","year":"2011","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0065","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1089\/088922202753472801","article-title":"Underestimation of HIV type 1 drug resistance mutations: results from the ENVA-2 genotyping proficiency program","volume":"18","author":"Schuurman","year":"2002","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0070","doi-asserted-by":"crossref","first-page":"321","DOI":"10.1001\/jama.2010.1004","article-title":"Antiretroviral treatment of adult HIV infection: 2010 recommendations of the International AIDS Society-USA panel","volume":"304","author":"Thompson","year":"2010","journal-title":"JAMA"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0075","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1089\/aid.2007.0138","article-title":"A radiolabeled oligonucleotide ligation assay demonstrates the high frequency of nevirapine resistance mutations in HIV type 1 quasispecies of NVP-treated and untreated mother\u2013infant pairs from Uganda","volume":"24","author":"Troyer","year":"2008","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.jviromet.2011.11.030_bib0080","doi-asserted-by":"crossref","first-page":"1195","DOI":"10.1101\/gr.6468307","article-title":"Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance","volume":"17","author":"Wang","year":"2007","journal-title":"Genome Res."},{"key":"10.1016\/j.jviromet.2011.11.030_bib0085","unstructured":"World Health Organization, 2009. Rapid Advice: Use of antiretroviral drugs for treating pregnant women and preventing HIV infection in infants. Geneva. Available at: www.who.int\/hiv\/pub\/mtct\/rapid_advice_mtct.pdf."}],"container-title":["Journal of Virological Methods"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0166093413001481?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0166093413001481?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,7,26]],"date-time":"2020-07-26T10:22:28Z","timestamp":1595758948000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0166093413001481"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,9]]},"references-count":17,"journal-issue":{"issue":"1-2","published-print":{"date-parts":[[2013,9]]}},"alternative-id":["S0166093413001481"],"URL":"https:\/\/doi.org\/10.1016\/j.jviromet.2011.11.030","relation":{},"ISSN":["0166-0934"],"issn-type":[{"value":"0166-0934","type":"print"}],"subject":[],"published":{"date-parts":[[2013,9]]}}}