{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T22:37:57Z","timestamp":1761950277048,"version":"build-2065373602"},"reference-count":18,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,10,1]],"date-time":"2025-10-01T00:00:00Z","timestamp":1759276800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,9,5]],"date-time":"2025-09-05T00:00:00Z","timestamp":1757030400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100003921","name":"Australian Government Department of Health Disability and Ageing","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100003921","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["thelancet.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["The Lancet Regional Health - Western Pacific"],"published-print":{"date-parts":[[2025,10]]},"DOI":"10.1016\/j.lanwpc.2025.101692","type":"journal-article","created":{"date-parts":[[2025,9,23]],"date-time":"2025-09-23T09:48:10Z","timestamp":1758620890000},"page":"101692","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Communicable diseases genomics network: promoting and harmonising pathogen genomics implementation for public health in Australia"],"prefix":"10.1016","volume":"63","author":[{"given":"Chantel","family":"Lin","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amy V.","family":"Jennison","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lex E.X.","family":"Leong","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David J.","family":"Speers","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ella M.","family":"Meumann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4542-8508","authenticated-orcid":false,"given":"Louise","family":"Cooley","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Karina","family":"Kennedy","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2637-8936","authenticated-orcid":false,"given":"Alicia","family":"Arnott","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Winter","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"William","family":"Rawlinson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jennifer","family":"Robson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2895-0345","authenticated-orcid":false,"given":"Patrick","family":"Harris","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Angela","family":"Donald","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6046-610X","authenticated-orcid":false,"given":"Torsten","family":"Seemann","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Susan A.","family":"Ballard","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martyn","family":"Kirk","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vitali","family":"Sintchenko","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Deborah A.","family":"Williamson","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0237-1473","authenticated-orcid":false,"given":"Benjamin P.","family":"Howden","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"issue":"3","key":"10.1016\/j.lanwpc.2025.101692_bib1","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1097\/PAT.0000000000000235","article-title":"Whole genome sequencing in clinical and public health microbiology","volume":"47","author":"Kwong","year":"2015","journal-title":"Pathology"},{"issue":"9","key":"10.1016\/j.lanwpc.2025.101692_bib2","doi-asserted-by":"crossref","first-page":"893","DOI":"10.1001\/jama.2018.21669","article-title":"Next-generation sequencing of infectious pathogens","volume":"321","author":"Gwinn","year":"2019","journal-title":"JAMA"},{"key":"10.1016\/j.lanwpc.2025.101692_bib3","article-title":"Towards equitable access to public health pathogen genomics in the Western Pacific","volume":"18","author":"Lin","year":"2022","journal-title":"Lancet Reg Health West Pac"},{"issue":"2","key":"10.1016\/j.lanwpc.2025.101692_bib4","doi-asserted-by":"crossref","first-page":"333","DOI":"10.1128\/JCM.02344-15","article-title":"Prospective whole-genome sequencing enhances national surveillance of Listeria monocytogenes","volume":"54","author":"Kwong","year":"2016","journal-title":"J Clin Microbiol"},{"key":"10.1016\/j.lanwpc.2025.101692_bib5","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.713724","article-title":"Added value of genomic surveillance of virulence factors in Shiga toxin-producing Escherichia coli in New South Wales, Australia","volume":"12","author":"Sim","year":"2021","journal-title":"Front Microbiol"},{"issue":"3","key":"10.1016\/j.lanwpc.2025.101692_bib6","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1089\/fpd.2017.2352","article-title":"Incorporating whole-genome sequencing into public health surveillance: lessons from prospective sequencing of Salmonella Typhimurium in Australia","volume":"15","author":"Ford","year":"2018","journal-title":"Foodborne Pathog Dis"},{"issue":"11","key":"10.1016\/j.lanwpc.2025.101692_bib7","doi-asserted-by":"crossref","first-page":"e3912","DOI":"10.1093\/cid\/ciaa972","article-title":"Search and contain: impact of an integrated genomic and epidemiological surveillance and response program for control of carbapenemase-producing enterobacterales","volume":"73","author":"Lane","year":"2021","journal-title":"Clin Infect Dis"},{"issue":"3","key":"10.1016\/j.lanwpc.2025.101692_bib8","doi-asserted-by":"crossref","first-page":"e1277","DOI":"10.1093\/cid\/ciac726","article-title":"Clinical implementation of routine whole-genome sequencing for hospital infection control of multi-drug resistant pathogens","volume":"76","author":"Forde","year":"2023","journal-title":"Clin Infect Dis"},{"issue":"1","key":"10.1016\/j.lanwpc.2025.101692_bib9","doi-asserted-by":"crossref","first-page":"3988","DOI":"10.1038\/s41467-019-12053-4","article-title":"Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era","volume":"10","author":"Williamson","year":"2019","journal-title":"Nat Commun"},{"issue":"6","key":"10.1016\/j.lanwpc.2025.101692_bib10","doi-asserted-by":"crossref","DOI":"10.3390\/v10060319","article-title":"The first isolation and whole genome sequencing of murray valley encephalitis virus from cerebrospinal fluid of a patient with encephalitis","volume":"10","author":"Russell","year":"2018","journal-title":"Viruses"},{"issue":"3","key":"10.1016\/j.lanwpc.2025.101692_bib11","doi-asserted-by":"crossref","first-page":"406","DOI":"10.3201\/eid2503.181003","article-title":"Cross-border movement of highly drug-resistant Mycobacterium tuberculosis from Papua New Guinea to Australia through torres strait protected zone, 2010-2015","volume":"25","author":"Bainomugisa","year":"2019","journal-title":"Emerg Infect Dis"},{"issue":"1","key":"10.1016\/j.lanwpc.2025.101692_bib15","doi-asserted-by":"crossref","first-page":"865","DOI":"10.1038\/s41467-022-28529-9","article-title":"AusTrakka: fast-tracking nationalized genomics surveillance in response to the COVID-19 pandemic","volume":"13","author":"Hoang","year":"2022","journal-title":"Nat Commun"},{"first-page":"45","year":"2021","series-title":"COVID-19 Epidemiology and Surveillance Team Australian Government Department of Health and Aged Care","key":"10.1016\/j.lanwpc.2025.101692_bib16"},{"issue":"8","key":"10.1016\/j.lanwpc.2025.101692_bib17","doi-asserted-by":"crossref","first-page":"e547","DOI":"10.1016\/S2468-2667(21)00133-X","article-title":"Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study","volume":"6","author":"Lane","year":"2021","journal-title":"Lancet Public Health"},{"issue":"11","key":"10.1016\/j.lanwpc.2025.101692_bib18","article-title":"Bioinformatic investigation of discordant sequence data for SARS-CoV-2: insights for robust genomic analysis during pandemic surveillance","volume":"9","author":"Zufan","year":"2023","journal-title":"Microb Genom"},{"key":"10.1016\/j.lanwpc.2025.101692_bib20","article-title":"Implementing a national programme of pathogen genomics for public health: the Australian Pathogen Genomics Program (AusPathoGen)","author":"Webb","year":"2024","journal-title":"Lancet Microbe"},{"key":"10.1016\/j.lanwpc.2025.101692_bib22","first-page":"47","article-title":"The use of whole genome sequencing for tuberculosis public health activities in Australia: a joint statement of the National Tuberculosis Advisory Committee and Communicable Diseases Genomics Network","volume":"2023","author":"Donnan","year":"2018","journal-title":"Commun Dis Intell"},{"issue":"4","key":"10.1016\/j.lanwpc.2025.101692_bib24","doi-asserted-by":"crossref","first-page":"114","DOI":"10.3390\/environments12040114","article-title":"Australian and New Zealand laboratory experience and proposed future direction of wastewater pathogen genomic surveillance","volume":"12","author":"Levy","year":"2025","journal-title":"Environments"}],"container-title":["The Lancet Regional Health - Western Pacific"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2666606525002317?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2666606525002317?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T22:34:08Z","timestamp":1761950048000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2666606525002317"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,10]]},"references-count":18,"alternative-id":["S2666606525002317"],"URL":"https:\/\/doi.org\/10.1016\/j.lanwpc.2025.101692","relation":{},"ISSN":["2666-6065"],"issn-type":[{"type":"print","value":"2666-6065"}],"subject":[],"published":{"date-parts":[[2025,10]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Communicable diseases genomics network: promoting and harmonising pathogen genomics implementation for public health in Australia","name":"articletitle","label":"Article Title"},{"value":"The Lancet Regional Health - Western Pacific","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.lanwpc.2025.101692","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Author(s). Published by Elsevier Ltd.","name":"copyright","label":"Copyright"}],"article-number":"101692"}}