{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,4]],"date-time":"2026-10-04T07:04:20Z","timestamp":1791097460149,"version":"4.1.0"},"reference-count":256,"publisher":"Elsevier BV","issue":"5","license":[{"start":{"date-parts":[[2008,9,1]],"date-time":"2008-09-01T00:00:00Z","timestamp":1220227200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Infection, Genetics and Evolution"],"published-print":{"date-parts":[[2008,9]]},"DOI":"10.1016\/j.meegid.2008.05.001","type":"journal-article","created":{"date-parts":[[2008,5,10]],"date-time":"2008-05-10T09:51:54Z","timestamp":1210413114000},"page":"708-726","source":"Crossref","is-referenced-by-count":107,"title":["Pneumocystis species, co-evolution and pathogenic power"],"prefix":"10.1016","volume":"8","author":[{"given":"C\u00e9cile-Marie","family":"Aliouat-Denis","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Magali","family":"Chab\u00e9","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Christine","family":"Demanche","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"El Moukhtar","family":"Aliouat","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Viscogliosi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jacques","family":"Guillot","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Laurence","family":"Delhaes","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eduardo","family":"Dei-Cas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.meegid.2008.05.001_bib1","unstructured":"Aliouat, E.M., 1995. Etude de l\u2019expression ph\u00e9notypique de la diversit\u00e9 g\u00e9nique de Pneumocystis carinii: infectivit\u00e9 et sp\u00e9cificit\u00e9 parasitaire. Ph.D. Thesis Dissertation. Lille I University, Lille, France."},{"key":"10.1016\/j.meegid.2008.05.001_bib2","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1016\/S0248-4900(05)80190-X","article-title":"In vitro attachment of Pneumocystis carinii from mouse and rat origin","volume":"77","author":"Aliouat","year":"1993","journal-title":"Biol. Cell"},{"key":"10.1016\/j.meegid.2008.05.001_bib3","doi-asserted-by":"crossref","first-page":"542","DOI":"10.1183\/09031936.98.11030542","article-title":"Surfactant changes during experimental pneumocystosis are related to the Pneumocystis development","volume":"11","author":"Aliouat","year":"1998","journal-title":"Eur. Respir. J."},{"key":"10.1016\/j.meegid.2008.05.001_bib4","first-page":"S116","article-title":"Pneumocystis carinii growth kinetics in culture systems and in hosts: involvement of each life cycle parasite stage","volume":"46","author":"Aliouat","year":"1999","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib5","first-page":"94","article-title":"Intranasal inoculation of mouse, rat or rabbit-derived Pneumocystis in SCID mice","volume":"3","author":"Aliouat","year":"1993","journal-title":"J. Protozool. Res."},{"key":"10.1016\/j.meegid.2008.05.001_bib6","first-page":"S71","article-title":"Pneumocystis cross infection experiments using SCID mice and nude rats as recipient host, showed strong host-species specificity","volume":"41","author":"Aliouat","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib7","doi-asserted-by":"crossref","first-page":"S23","DOI":"10.1111\/j.1550-7408.1996.tb04961.x","article-title":"Role of alveolar macrophages during the spontaneous Pneumocystis carinii pneumonia of rabbits at weaning","volume":"43","author":"Allaert","year":"1996","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib8","doi-asserted-by":"crossref","first-page":"S45","DOI":"10.1111\/j.1550-7408.1997.tb05767.x","article-title":"Detection of cytokine mRNA in the lung during spontaneous Pneumocystis carinii pneumonia of the young rabbit","volume":"44","author":"Allaert","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib9","unstructured":"Anonymous, 1994. Revised nomenclature for Pneumocystis carinii. The Pneumocystis workshop. J. Eukaryot. Microbiol. 41, S121\u2013S122."},{"key":"10.1016\/j.meegid.2008.05.001_bib10","first-page":"271","article-title":"Nota sobre as schizogonias e gametogonidas dos trypanosomas","volume":"11","author":"Aragao","year":"1913","journal-title":"Bras. Med."},{"key":"10.1016\/j.meegid.2008.05.001_bib11","first-page":"S112","article-title":"P.carinii host specificity: attempt of cross infections with human derived strains in rats","volume":"46","author":"Atzori","year":"1999","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib12","doi-asserted-by":"crossref","first-page":"675","DOI":"10.1111\/j.1550-7408.1995.tb01614.x","article-title":"Analysis of genetic diversity at the arom locus in isolates of Pneumocystis carinii","volume":"42","author":"Banerji","year":"1995","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib13","first-page":"S73","article-title":"Identification of two genetically distinct strains of Pneumocystis carinii in infected ferret lungs","volume":"41","author":"Banerji","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib14","doi-asserted-by":"crossref","first-page":"2901","DOI":"10.1099\/00221287-139-12-2901","article-title":"The cloning and characterization of the arom gene of Pneumocystis carinii","volume":"139","author":"Banerji","year":"1993","journal-title":"J. Gen. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib15","first-page":"527","article-title":"Further observations on the ultrastructure of Pneumocystis","volume":"83","author":"Barton","year":"1967","journal-title":"Arch. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib16","first-page":"S75","article-title":"Pneumocystis carinii detected in air","volume":"41","author":"Bartlett","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib17","doi-asserted-by":"crossref","first-page":"1315","DOI":"10.1128\/IAI.61.4.1315-1319.1993","article-title":"Pneumocystis carinii organisms obtained from rats, ferrets and mice are antigenically different","volume":"61","author":"Bauer","year":"1993","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib18","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1016\/S0022-3476(70)80301-8","article-title":"Pneumocystis carinii pneumonia in three full-term siblings","volume":"76","author":"Bazaz","year":"1970","journal-title":"J. Pediatr."},{"key":"10.1016\/j.meegid.2008.05.001_bib19","doi-asserted-by":"crossref","first-page":"265","DOI":"10.3201\/eid0603.000306","article-title":"Genetic variation in Pneumocystis carinii isolates from different geographic regions: implications for transmission","volume":"6","author":"Beard","year":"2000","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib20","doi-asserted-by":"crossref","first-page":"1815","DOI":"10.1086\/497381","article-title":"Genetic differences in Pneumocystis isolates recovered from immunocompetent infants and from adults with AIDS: epidemiological Implications","volume":"192","author":"Beard","year":"2005","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib21","first-page":"L118","article-title":"Interaction of rat Pneumocystis carinii and rat alveolar epithelial cells in vitro","volume":"275","author":"Beck","year":"1998","journal-title":"Am. J. Physiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib22","doi-asserted-by":"crossref","first-page":"881","DOI":"10.1128\/JCM.02245-06","article-title":"Frequent in vitro recombination in internal transcribed spacers 1 and 2 during genotyping of Pneumocystis jirovecii","volume":"45","author":"Beser","year":"2007","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib23","first-page":"407","article-title":"Pneumocystis carinii pneumonia in Danish piglets","volume":"127","author":"Bille-Hansen","year":"1990","journal-title":"Vet. Rec."},{"key":"10.1016\/j.meegid.2008.05.001_bib24","doi-asserted-by":"crossref","first-page":"S57","DOI":"10.1111\/j.1550-7408.1997.tb05777.x","article-title":"Detection of Pneumocystis DNA in the lungs of several species of wild mammal","volume":"44","author":"Bishop","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib25","series-title":"Pneumonia","first-page":"157","article-title":"Noninvasive methods for the diagnosis of pneumonia","author":"Blasi","year":"1997"},{"key":"10.1016\/j.meegid.2008.05.001_bib26","doi-asserted-by":"crossref","first-page":"527","DOI":"10.1038\/301527a0","article-title":"A severe combined immunodeficiency mutation in the mouse","volume":"301","author":"Bosma","year":"1983","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2008.05.001_bib27","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1128\/IAI.00986-07","article-title":"Pneumocystis carinii exhibits a conserved meiotic control pathway","volume":"76","author":"Burgess","year":"2008","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib28","doi-asserted-by":"crossref","first-page":"227","DOI":"10.1080\/02681219680000401","article-title":"Pneumocystis carinii: an atypical fungal microorganism","volume":"34","author":"Cailliez","year":"1996","journal-title":"J. Med. Vet. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib29","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1016\/S0140-6736(96)91468-3","article-title":"Pneumocystis carinii infection in patients with chronic bronchial disease","volume":"347","author":"Calder\u00f3n","year":"1996","journal-title":"Lancet"},{"key":"10.1016\/j.meegid.2008.05.001_bib30","doi-asserted-by":"crossref","first-page":"e17","DOI":"10.1086\/518989","article-title":"Systemic inflammation in patients with chronic obstructive pulmonary disease who are colonized with Pneumocystis jirovecii","volume":"45","author":"Calder\u00f3n","year":"2007","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib31","doi-asserted-by":"crossref","first-page":"673","DOI":"10.1111\/j.1469-0691.2004.00921.x","article-title":"Epidemiology of Pneumocystis carinii pneumonia in southern Spain","volume":"10","author":"Calder\u00f3n","year":"2004","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.meegid.2008.05.001_bib32","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1078\/1434-4610-00107","article-title":"Historical perspective on Pneumocystis carinii infection","volume":"153","author":"Calder\u00f3n-Sandubete","year":"2002","journal-title":"Protist"},{"key":"10.1016\/j.meegid.2008.05.001_bib33","first-page":"312","article-title":"Ultrastructure of Pneumocystis in human lungs: life cycle of human pneumocystosis","volume":"93","author":"Campbell","year":"1972","journal-title":"Arch. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib34","first-page":"204","article-title":"Formas de eschizogonia do Trypanosoma lewisi","volume":"18","author":"Carini","year":"1910","journal-title":"Bol. Soc. de Med. e Cir de Sao Paulo"},{"key":"10.1016\/j.meegid.2008.05.001_bib35","doi-asserted-by":"crossref","first-page":"46","DOI":"10.1186\/1477-7827-2-46","article-title":"Comparative aspects of trophoblast development and placentation","volume":"2","author":"Carter","year":"2004","journal-title":"Reprod. Biol. Endocrinol."},{"key":"10.1016\/j.meegid.2008.05.001_bib36","doi-asserted-by":"crossref","first-page":"S28","DOI":"10.1111\/j.1550-7408.1997.tb05752.x","article-title":"Presence of Pneumocystis carinii DNA in pond water","volume":"44","author":"Casanova-Cardiel","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib37","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1080\/13693780701385876","article-title":"Detection of Pneumocystis spp. in lung samples from pigs in Brazil","volume":"45","author":"Cavallini-Sanches","year":"2007","journal-title":"Med. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib38","doi-asserted-by":"crossref","first-page":"325","DOI":"10.1051\/parasite\/1997044325","article-title":"In utero transmission of Pneumocystis carinii sp. f. oryctolagi","volume":"4","author":"Cer\u00e9","year":"1997","journal-title":"Parasite"},{"key":"10.1016\/j.meegid.2008.05.001_bib39","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1007\/s10096-003-1092-2","article-title":"Immunocompetent hosts as a reservoir of Pneumocystis organisms: histological and RT-PCR data demonstrate active replication","volume":"23","author":"Chab\u00e9","year":"2004","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib40","doi-asserted-by":"crossref","first-page":"1167","DOI":"10.1099\/mic.0.26895-0","article-title":"Molecular typing of Pneumocystis jirovecii found in formalin-fixed paraffin-embedded lung tissue sections from sudden infant death victims","volume":"150","author":"Chab\u00e9","year":"2004","journal-title":"Microbiology"},{"key":"10.1016\/j.meegid.2008.05.001_bib41","doi-asserted-by":"crossref","first-page":"159","DOI":"10.1590\/S0074-02761909000200008","article-title":"Nova tripanozomiazaea humana","volume":"1","author":"Chagas","year":"1909","journal-title":"Mem. Inst. Oswaldo Cruz"},{"key":"10.1016\/j.meegid.2008.05.001_bib42","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1590\/S0074-02761911000200003","article-title":"Nova entidade morbida do homen: regumo general de estudos etiologicos e clinicos","volume":"3","author":"Chagas","year":"1911","journal-title":"Mem. Inst. Oswaldo Cruz"},{"key":"10.1016\/j.meegid.2008.05.001_bib43","first-page":"225","article-title":"Revisao do ciclo evolutivo do Trypanosoma cruzi","volume":"11","author":"Chagas","year":"1913","journal-title":"Braz. Med."},{"key":"10.1016\/j.meegid.2008.05.001_bib44","doi-asserted-by":"crossref","first-page":"5406","DOI":"10.1128\/IAI.61.12.5406-5409.1993","article-title":"Latency is not an inevitable outcome of infection with Pneumocystis carinii","volume":"61","author":"Chen","year":"1993","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib45","doi-asserted-by":"crossref","first-page":"271","DOI":"10.3347\/kjp.1999.37.4.271","article-title":"Karyotypes of Pneumocystis carinii derived from several mammals","volume":"37","author":"Cho","year":"1999","journal-title":"Korean J. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib46","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1080\/02681219680000761","article-title":"Pneumocystis carinii from pigs and humans are antigenically distinct","volume":"34","author":"Christensen","year":"1996","journal-title":"J. Med. Vet. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib47","doi-asserted-by":"crossref","first-page":"S47","DOI":"10.1111\/j.1550-7408.1996.tb04983.x","article-title":"Pneumocystis carinii pneumonia in four mammal species: histopatholgy and ultrastructure","volume":"43","author":"Creusy","year":"1996","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib48","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1111\/j.1574-695X.1998.tb01186.x","article-title":"Genetic heterogeneity of rat-derived Pneumocystis","volume":"22","author":"Cushion","year":"1998","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib49","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1016\/j.tim.2004.03.005","article-title":"Pneumocystis: unraveling the cloak of obscurity","volume":"12","author":"Cushion","year":"2004","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib50","doi-asserted-by":"crossref","first-page":"4801","DOI":"10.1128\/IAI.61.11.4801-4813.1993","article-title":"Genetic stability and diversity of Pneumocystis carinii infecting rat colonies","volume":"61","author":"Cushion","year":"1993","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib51","doi-asserted-by":"crossref","first-page":"429","DOI":"10.2307\/3762163","article-title":"Molecular and phenotypic description of Pneumocystis wakefieldiae sp. nov., a new species in rats","volume":"96","author":"Cushion","year":"2004","journal-title":"Mycologia"},{"key":"10.1016\/j.meegid.2008.05.001_bib52","doi-asserted-by":"crossref","unstructured":"Cushion, M.T., Smulian, A.G., 2006. Pneumocystis 2006: summary of the research presented at the Ninth International Workshop on Opportunistic Protists. J. Eukaryot. Microbiol. 53, S80\u2013S84.","DOI":"10.1111\/j.1550-7408.2006.00181.x"},{"key":"10.1016\/j.meegid.2008.05.001_bib53","doi-asserted-by":"crossref","first-page":"e423","DOI":"10.1371\/journal.pone.0000423","article-title":"Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite","volume":"2","author":"Cushion","year":"2007","journal-title":"PLoS ONE"},{"key":"10.1016\/j.meegid.2008.05.001_bib54","doi-asserted-by":"crossref","first-page":"1217","DOI":"10.1128\/JCM.31.5.1217-1223.1993","article-title":"Evidence for two genetic variants of Pneumocystis carinii coinfecting laboratory rats","volume":"31","author":"Cushion","year":"1993","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib55","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1080\/mmy.38.s1.23.32","article-title":"Pneumocystis Infections: the Iceberg?","volume":"38","author":"Dei-Cas","year":"2000","journal-title":"Med. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib56","series-title":"Pneumocystis Pneumonia","first-page":"61","article-title":"Cellular structure","author":"Dei-Cas","year":"2004"},{"key":"10.1016\/j.meegid.2008.05.001_bib57","doi-asserted-by":"crossref","first-page":"853","DOI":"10.1111\/j.1574-6976.2006.00037.x","article-title":"Pneumocystis oryctolagi sp. nov., an uncultured fungus causing pneumonia in rabbits at weaning: review of current knowledge, and description of a new taxon on genotypic, phylogenetic and phenotypic bases","volume":"80","author":"Dei-Cas","year":"2006","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.meegid.2008.05.001_bib58","first-page":"S205","article-title":"Ultrastructural observations on the attachment of Pneumocystis carinii in vitro","volume":"38","author":"Dei-Cas","year":"1991","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib59","first-page":"1","article-title":"The host-specificity of Pneumocystis carinii","volume":"8","author":"Dei-Cas","year":"1998","journal-title":"J. Mycologie M\u00e9dicale"},{"key":"10.1016\/j.meegid.2008.05.001_bib60","series-title":"Parasitology for the 21st Century: ICOPA VIII","first-page":"175","article-title":"Infection sources, reservoir and transmission of pneumocystosis","author":"Dei-Cas","year":"1996"},{"key":"10.1016\/j.meegid.2008.05.001_bib61","first-page":"S84","article-title":"Ultrastructural, genomic, isoenzymatic and biological features make it possible to distinguish rabbit Pneumocystis from other mammal Pneumocystis strains","volume":"41","author":"Dei-Cas","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib62","first-page":"517","article-title":"Pneumocystis carinii, un d\u00e9fi pour le biologiste","volume":"6","author":"Dei-Cas","year":"1990","journal-title":"Med. Sci."},{"key":"10.1016\/j.meegid.2008.05.001_bib63","doi-asserted-by":"crossref","first-page":"173","DOI":"10.3109\/10408418609108738","article-title":"Parasitic adaptation of pathogenic fungi to the mammalian hosts","volume":"13","author":"Dei-Cas","year":"1986","journal-title":"CRC Crit. Rev. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib64","first-page":"658","article-title":"Sur les rapports des kystes de carinii du poumon des rats avec le Trypanosoma lewisi","volume":"155","author":"Delano\u00eb","year":"1912","journal-title":"C.R. Acad. Sci. (Paris)"},{"key":"10.1016\/j.meegid.2008.05.001_bib65","series-title":"La maladie de Chagas. Histoire d\u2019un fl\u00e9au continental","author":"Delaporte","year":"1999"},{"key":"10.1016\/j.meegid.2008.05.001_bib66","unstructured":"Demanche, C., 2003. Genetic variability and circulation of Pneumocystis in non-human primates populations. Ph.D. Thesis Dissertation. Universit\u00e9 de Paris XII."},{"key":"10.1016\/j.meegid.2008.05.001_bib67","doi-asserted-by":"crossref","first-page":"2126","DOI":"10.1128\/JCM.39.6.2126-2133.2001","article-title":"Phylogeny of Pneumocystis carinii from 18 primate species confirms host specificity and suggests co-evolution","volume":"39","author":"Demanche","year":"2001","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib68","doi-asserted-by":"crossref","first-page":"811","DOI":"10.1136\/vr.152.26.811","article-title":"Assessment of Pneumocystis species carriage in captive primates","volume":"152","author":"Demanche","year":"2003","journal-title":"Vet. Rec."},{"key":"10.1016\/j.meegid.2008.05.001_bib69","doi-asserted-by":"crossref","first-page":"3117","DOI":"10.1099\/mic.0.28059-0","article-title":"Molecular and serological evidence of Pneumocystis circulation in a social organization of healthy macaques (Macaca fascicularis)","volume":"151","author":"Demanche","year":"2005","journal-title":"Microbiology"},{"key":"10.1016\/j.meegid.2008.05.001_bib70","doi-asserted-by":"crossref","first-page":"475","DOI":"10.1111\/j.1550-7408.1998.tb05103.x","article-title":"Molecular cloning and characterization of a superoxide dismutase (SOD) gene in Pneumocystis carinii","volume":"45","author":"Denis","year":"1998","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib71","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1080\/mmy.38.4.289.300","article-title":"Genetic divergence at the SOD-A locus of six different formae speciales of Pneumocystis carinii","volume":"38","author":"Denis","year":"2000","journal-title":"Med. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib72","doi-asserted-by":"crossref","first-page":"1165","DOI":"10.1128\/JCM.44.3.1165-1168.2006","article-title":"Molecular identification of Tritrichomonas foetus-like organisms as coinfecting agents of human Pneumocystis pneumonia","volume":"44","author":"Duboucher","year":"2006","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib73","doi-asserted-by":"crossref","first-page":"295","DOI":"10.1007\/s00408-007-9022-1","article-title":"Pulmonary superinfection by trichomonads in the course of acute respiratory distress syndrome","volume":"185","author":"Duboucher","year":"2007","journal-title":"Lung"},{"issue":"12.","key":"10.1016\/j.meegid.2008.05.001_bib74","article-title":"Pneumocystis pneumonia: immunodepression, Pneumocystis jirovecii \u2026 and the third man","volume":"5","author":"Duboucher","year":"2007","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib75","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1159\/000326149","article-title":"Frequency of trichomonads as coinfecting agents in Pneumocystis pneumonia","volume":"49","author":"Duboucher","year":"2005","journal-title":"Acta Cytol."},{"key":"10.1016\/j.meegid.2008.05.001_bib76","doi-asserted-by":"crossref","first-page":"508","DOI":"10.1016\/S0046-8177(03)00088-1","article-title":"Pulmonary co-infection by Trichomonas vaginalis and Pneumocystis sp. organisms as a novel manifestation of acquired immunodeficiency syndrome","volume":"34","author":"Duboucher","year":"2003","journal-title":"Hum. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib77","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1007\/s100960000354","article-title":"Transmission of Pneumocystis carinii disease from immunocompetent contacts of infected hosts to susceptible hosts","volume":"19","author":"Dumoulin","year":"2000","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib78","doi-asserted-by":"crossref","first-page":"1862","DOI":"10.1128\/JCM.40.5.1862-1865.2002","article-title":"Pneumocystis carinii f.sp. hominis is not infectious for SCID mice","volume":"40","author":"Durand-Joly","year":"2002","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib79","doi-asserted-by":"crossref","first-page":"614","DOI":"10.1111\/j.1550-7408.2003.tb00650.x","article-title":"Long-term colonization with Pneumocystis jirovecii in hospital staffs: a challenge to prevent nosocomial pneumocystosis","volume":"50","author":"Durand-Joly","year":"2003","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib80","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1080\/714030897","article-title":"Ultrastructural and molecular characterization of Pneumocystis carinii isolated from a rhesus monkey (Macaca mulatta)","volume":"38","author":"Durand-Joly","year":"2000","journal-title":"Med. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib81","doi-asserted-by":"crossref","first-page":"3365","DOI":"10.1111\/j.1365-2958.1992.tb02204.x","article-title":"The beta-tubulin gene from rat and human isolates of Pneumocystis carinii","volume":"6","author":"Edlind","year":"1992","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib82","doi-asserted-by":"crossref","first-page":"8625","DOI":"10.1073\/pnas.86.22.8625","article-title":"Isolation and expression of the Pneumocystis carinii dihydrofolate reductase gene","volume":"86","author":"Edman","year":"1989","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.meegid.2008.05.001_bib83","doi-asserted-by":"crossref","first-page":"S18","DOI":"10.1111\/j.1550-7408.1989.tb02672.x","article-title":"Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi","volume":"36","author":"Edman","year":"1989","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib84","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1038\/334519a0","article-title":"Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi","volume":"334","author":"Edman","year":"1988","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2008.05.001_bib85","doi-asserted-by":"crossref","first-page":"6503","DOI":"10.1073\/pnas.86.17.6503","article-title":"Isolation and expression of the Pneumocystis carinii thymidylate synthase gene","volume":"86","author":"Edman","year":"1989","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.meegid.2008.05.001_bib86","doi-asserted-by":"crossref","first-page":"S106","DOI":"10.1111\/j.1550-7408.2001.tb00471.x","article-title":"DNA analysis of Pneumocystis infecting a Cavalier King Charles spaniel","volume":"48","author":"English","year":"2001","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib87","first-page":"165","article-title":"Pneumocystis carinii, a parasite in lungs of mammals, referred to a new family and order (Pneumocystidaceae, Pneumocystidales, Ascomycota)","volume":"13","author":"Eriksson","year":"1994","journal-title":"Systema Ascomycetum"},{"key":"10.1016\/j.meegid.2008.05.001_bib88","first-page":"1","article-title":"Supraordinal taxa of the Ascomycota","volume":"1","author":"Eriksson","year":"1997","journal-title":"Myconet"},{"key":"10.1016\/j.meegid.2008.05.001_bib89","doi-asserted-by":"crossref","first-page":"1558","DOI":"10.1378\/chest.101.6.1558","article-title":"Surfactant analysis during Pneumocystis carinii pneumonia in HIV-infected patients","volume":"101","author":"Escamilla","year":"1992","journal-title":"Chest"},{"key":"10.1016\/j.meegid.2008.05.001_bib90","doi-asserted-by":"crossref","first-page":"S156","DOI":"10.1111\/j.1550-7408.2006.00213.x","article-title":"Evolutionary rate of ribosomal DNA in Pneumocystis species is normal despite the extraordinarily low copy-number of rDNA genes","volume":"53","author":"Fischer","year":"2006","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib91","doi-asserted-by":"crossref","first-page":"399","DOI":"10.1111\/j.1751-0813.1998.tb12387.x","article-title":"CD4+ and CD8+ T-lymphocytopenia in a filly with Pneumocystis carinii pneumonia","volume":"76","author":"Flaminio","year":"1998","journal-title":"Aust. Vet. J."},{"key":"10.1016\/j.meegid.2008.05.001_bib92","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1378\/chest.95.6.1198","article-title":"Bronchoalveolar lavage eosinophilia associated with Pneumocystis carinii pneumonitis in AIDS patients. Comparative study with non-AIDS patients","volume":"95","author":"Fleury-Feith","year":"1989","journal-title":"Chest"},{"key":"10.1016\/j.meegid.2008.05.001_bib93","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1126\/science.143.3604.363","article-title":"Rhesus and crab-eating Macaques: intergradation in Thailand","volume":"143","author":"Fooden","year":"1964","journal-title":"Science"},{"key":"10.1016\/j.meegid.2008.05.001_bib94","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1007\/BF02381611","article-title":"Tail length variation in Macaca fascicularis and M. mulatta","volume":"38","author":"Fooden","year":"1997","journal-title":"Primates"},{"key":"10.1016\/j.meegid.2008.05.001_bib95","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1016\/j.ympev.2006.05.001","article-title":"Manganese superoxide dismutase based phylogeny of pathogenic fungi","volume":"41","author":"Fr\u00e9alle","year":"2006","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.meegid.2008.05.001_bib96","doi-asserted-by":"crossref","first-page":"411","DOI":"10.1016\/j.femsim.2005.06.003","article-title":"Manganese superoxide dismutase in pathogenic fungi: an issue with pathophysiological and phylogenetic involvements","volume":"45","author":"Fr\u00e9alle","year":"2005","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib97","first-page":"13","article-title":"Pneumocystis jiroveci n. sp. from man: morphology, physiology, and immunology in relation to pathology","volume":"43","author":"Frenkel","year":"1976","journal-title":"Natl. Cancer Inst. Monogr."},{"key":"10.1016\/j.meegid.2008.05.001_bib98","first-page":"S89","article-title":"Pneumocystis pneumonia, an immunodeficiency-dependent disease (IDD): a critical historical overview","volume":"46","author":"Frenkel","year":"1999","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib99","first-page":"11","article-title":"Intra- and interspecies transmission and antigenic difference of Pneumocystis carinii derived from rat and mouse","volume":"57","author":"Furuta","year":"1987","journal-title":"Jpn. J. Exp. Med."},{"key":"10.1016\/j.meegid.2008.05.001_bib100","doi-asserted-by":"crossref","first-page":"624","DOI":"10.1007\/BF00932502","article-title":"Severe pulmonary pneumocystosis in simian acquired immunodeficiency syndrome induced by simian immunodeficiency virus: its characterization by the polymerase-chain-reaction method and failure of experimental transmission to immunodeficient animals","volume":"79","author":"Furuta","year":"1993","journal-title":"Parasitol. Res."},{"key":"10.1016\/j.meegid.2008.05.001_bib101","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1542\/peds.19.4.543","article-title":"Pneumocystis carinii; etiologic agent of interstitial plasma cell pneumonia of premature and young infants","volume":"19","author":"Gajdusek","year":"1957","journal-title":"Pediatrics"},{"key":"10.1016\/j.meegid.2008.05.001_bib102","doi-asserted-by":"crossref","first-page":"3092","DOI":"10.1128\/IAI.62.8.3092-3101.1994","article-title":"Molecular characterization of clustered variants of genes encoding major surface antigens of human Pneumocystis carinii","volume":"62","author":"Garbe","year":"1994","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib103","first-page":"S2","article-title":"Principales enfermedades f\u00fangicas que afectan a los animales dom\u00e9sticos","volume":"17","author":"Garc\u00eda","year":"2000","journal-title":"Rev. Ibero. Micol."},{"key":"10.1016\/j.meegid.2008.05.001_bib104","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1016\/S0022-3476(70)80302-X","article-title":"Pneumocystis carinii pneumonia in siblings","volume":"76","author":"Gentry","year":"1970","journal-title":"J. Pediatr."},{"key":"10.1016\/j.meegid.2008.05.001_bib105","doi-asserted-by":"crossref","first-page":"329","DOI":"10.1093\/infdis\/165.2.329","article-title":"Host species-specific antigenic variation of a mannosylated surface glycoprotein of Pneumocystis carinii","volume":"165","author":"Gigliotti","year":"1992","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib106","doi-asserted-by":"crossref","first-page":"2886","DOI":"10.1128\/IAI.61.7.2886-2890.1993","article-title":"Pneumocystis carinii is not universally transmissible between mammalian species","volume":"61","author":"Gigliotti","year":"1993","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib107","doi-asserted-by":"crossref","first-page":"3852","DOI":"10.1128\/IAI.71.7.3852-3856.2003","article-title":"Characterization of transmission of Pneumocystis carinii f.sp. muris through immunocompetent BALB\/c mice","volume":"71","author":"Gigliotti","year":"2003","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib108","first-page":"S88","article-title":"Extraordinarily low number of ribosomal RNA genes in P. carinii","volume":"41","author":"Giuntoli","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib109","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1007\/BF00925491","article-title":"Arvicola terrestris, Linnaeus 1758, a reservoir of Pneumocystis sp. Delano\u00eb and Delano\u00eb 1912","volume":"72","author":"Goyot","year":"1986","journal-title":"Z. Parasitenkd."},{"key":"10.1016\/j.meegid.2008.05.001_bib110","doi-asserted-by":"crossref","first-page":"711","DOI":"10.1093\/biomet\/82.4.711","article-title":"Reversible jump Markov chain Monte Carlo computation and Bayesian model determination","volume":"82","author":"Green","year":"1995","journal-title":"Biometrika"},{"key":"10.1016\/j.meegid.2008.05.001_bib111","doi-asserted-by":"crossref","first-page":"454","DOI":"10.1128\/CMR.12.3.454","article-title":"Developments in fungal taxonomy","volume":"12","author":"Guarro","year":"1999","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.meegid.2008.05.001_bib112","first-page":"S100","article-title":"Acquisition and biodiversity of Pneumocystis carinii in a colony of wild rabbits (Oryctolagus cuniculus)","volume":"46","author":"Guillot","year":"1999","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib113","doi-asserted-by":"crossref","first-page":"S113","DOI":"10.1111\/j.1550-7408.2001.tb00475.x","article-title":"Parallel phylogenies of Pneumocystis species and their mammalian hosts","volume":"47","author":"Guillot","year":"2001","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib114","doi-asserted-by":"crossref","first-page":"988","DOI":"10.1016\/j.ympev.2003.10.022","article-title":"Phylogenetic relationships among Pneumocystis from Asian macaques inferred from mitochondrial rRNA sequences","volume":"31","author":"Guillot","year":"2004","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.meegid.2008.05.001_bib115","doi-asserted-by":"crossref","first-page":"504","DOI":"10.1093\/ajcp\/87.4.504","article-title":"Pneumocystis carinii: taxonomy as viewed by electron microscopy","volume":"87","author":"Haque","year":"1987","journal-title":"Am. J. Clin. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib116","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1128\/CDLI.8.3.503-508.2001","article-title":"Internal transcribed spacer regions of rRNA genes of Pneumocystis carinii from monkeys","volume":"8","author":"Hsueh","year":"2001","journal-title":"Clin. Diagn. Lab. Immunol."},{"key":"10.1016\/j.meegid.2008.05.001_bib117","series-title":"Pneumocystis carinii Pneumonitis","author":"Hughes","year":"1987"},{"key":"10.1016\/j.meegid.2008.05.001_bib118","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1080\/10635150390250893","article-title":"Phylogenetic systematics and evolution of primate-derived Pneumocystis based on mitochondrial or nuclear DNA sequences comparison","volume":"52","author":"Hugot","year":"2003","journal-title":"System. Biol."},{"key":"10.1016\/j.meegid.2008.05.001_bib119","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1016\/0169-4758(89)90303-7","article-title":"The evolution of phylogenetic specificity among parasitic organisms","volume":"5","author":"Humphery-Smith","year":"1989","journal-title":"Parasitol. Today"},{"key":"10.1016\/j.meegid.2008.05.001_bib120","doi-asserted-by":"crossref","first-page":"S24","DOI":"10.1111\/j.1550-7408.1996.tb04962.x","article-title":"Genetic divergence at the mitochondrial small subunit ribosomal RNA gene among isolates of Pneumocystis carinii from five mammalian host species","volume":"43","author":"Hunter","year":"1996","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib121","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1128\/EC.1.3.414-419.2002","article-title":"Early acquisition of Pneumocystis carinii in neonatal rats as evidenced by PCR and oral swabs","volume":"1","author":"Icenhour","year":"2002","journal-title":"Eukaryot. Cell"},{"key":"10.1016\/j.meegid.2008.05.001_bib122","doi-asserted-by":"crossref","first-page":"644","DOI":"10.2307\/3283204","article-title":"Ultrastructural demonstration of a pore in the cyst wall of Pneumocystis carinii","volume":"80","author":"Itatani","year":"1994","journal-title":"J. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib123","doi-asserted-by":"crossref","first-page":"2259","DOI":"10.1128\/AAC.44.9.2259-2262.2000","article-title":"Prophylactic effect of FK463, a novel antifungal lipopeptide, against Pneumocystis carinii infection in mice","volume":"44","author":"Ito","year":"2000","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.meegid.2008.05.001_bib124","first-page":"S218","article-title":"Study on placental transmission of Pneumocystis carinii in mice using immunodeficient SCID mice as a new animal model","volume":"38","author":"Ito","year":"1991","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib125","doi-asserted-by":"crossref","first-page":"1030","DOI":"10.1086\/368186","article-title":"Changes in mortality related to human immunodeficiency virus infection: comparative analysis of inpatient deaths in 1995 and in 1999\u20132000","volume":"36","author":"Jain","year":"2003","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib126","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1354\/vp.38-3-269","article-title":"Application of fluorescent in situ hybridization for specific diagnosis of Pneumocystis carinii pneumonia in foals and pigs","volume":"38","author":"Jensen","year":"2001","journal-title":"Vet. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib127","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1097\/00002030-199902250-00016","article-title":"Evidence for cdc2 gene in Pneumocystis carinii hominis and its implication for culture","volume":"13","author":"Kaiser","year":"1999","journal-title":"AIDS"},{"key":"10.1016\/j.meegid.2008.05.001_bib128","doi-asserted-by":"crossref","first-page":"S1","DOI":"10.1111\/j.1550-7408.2006.00154.x","article-title":"The International Workshops on opportunistic protists","volume":"53","author":"Kaneshiro","year":"2006","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib129","doi-asserted-by":"crossref","first-page":"1630","DOI":"10.1128\/AAC.44.6.1630-1638.2000","article-title":"Inhibitors of sterol biosynthesis and Amphotericin B reduce the viability of Pneumocystis carinii f.sp. carinii","volume":"44","author":"Kaneshiro","year":"2000","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.meegid.2008.05.001_bib130","doi-asserted-by":"crossref","first-page":"4105","DOI":"10.1128\/IAI.64.10.4105-4114.1996","article-title":"Characterizations of neutral lipid fatty acids and cis-9,10-epoxy octadecanoic acid in Pneumocystis carinii carinii","volume":"64","author":"Kaneshiro","year":"1996","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib131","doi-asserted-by":"crossref","first-page":"1153","DOI":"10.1099\/mic.0.26921-0","article-title":"Phylogenetic identification of Pneumocystis murina sp. nov., a new species in laboratory mice","volume":"150","author":"Keely","year":"2004","journal-title":"Microbiology"},{"key":"10.1016\/j.meegid.2008.05.001_bib132","doi-asserted-by":"crossref","first-page":"S624","DOI":"10.1111\/j.1550-7408.2003.tb00655.x","article-title":"Evolution and speciation of Pneumocystis","volume":"50","author":"Keely","year":"2003","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib133","doi-asserted-by":"crossref","first-page":"905","DOI":"10.1016\/j.fgb.2007.01.004","article-title":"Pneumocystis murina MSG gene family and the structure of the locus associated with its transcription","volume":"44","author":"Keely","year":"2007","journal-title":"Fungal Genet. Biol."},{"key":"10.1016\/j.meegid.2008.05.001_bib134","first-page":"S94","article-title":"Pneumocystis species inferred from analysis of multiple genes","volume":"41","author":"Keely","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib135","series-title":"Pneumocystis Pneumonia","first-page":"39","article-title":"Nomenclature and genetic variation of Pneumocystis","author":"Keely","year":"2005"},{"key":"10.1016\/j.meegid.2008.05.001_bib136","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1093\/infdis\/172.2.595","article-title":"Genetic variation among Pneumocystis carinii hominis isolates in recurrent pneumocystosis","volume":"172","author":"Keely","year":"1995","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib137","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1016\/S0021-9975(08)80289-7","article-title":"Pathological changes in epidemic porcine Pneumocystis carinii pneumonia","volume":"108","author":"Kondo","year":"1993","journal-title":"J. Comp. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib138","doi-asserted-by":"crossref","first-page":"6463","DOI":"10.1128\/IAI.71.11.6463-6471.2003","article-title":"Lung epithelial cells and extracellular matrix components induce expression of Pneumocystis carinii STE20, a gene complementing the mating and pseudohyphal growth defects of STE20 mutant yeast","volume":"71","author":"Kottom","year":"2003","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib139","doi-asserted-by":"crossref","first-page":"6034","DOI":"10.1016\/S0021-9258(18)53422-0","article-title":"Multiple genes encode the major surface glycoprotein of Pneumocystis carinii","volume":"268","author":"Kovacs","year":"1993","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.meegid.2008.05.001_bib140","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1016\/S0020-7519(97)00155-0","article-title":"Pneumocystis carinii in wildlife","volume":"28","author":"Laakkonen","year":"1998","journal-title":"Int. J. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib141","doi-asserted-by":"crossref","first-page":"408","DOI":"10.7589\/0090-3558-37.2.408","article-title":"Pneumocystosis in wild small mammals from California","volume":"37","author":"Laakkonen","year":"2001","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib142","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1017\/S0031182098003497","article-title":"Seasonal dynamics of Pneumocystis carinii in the field vole, Microtus agrestis, and in the common shrew, Sorex araneus, in Finland","volume":"118","author":"Laakkonen","year":"1999","journal-title":"Parasitology"},{"key":"10.1016\/j.meegid.2008.05.001_bib143","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1111\/j.1550-7408.1997.tb05947.x","article-title":"Pneumocystis carinii of the common shrew, Sorex araneus, shows a discrete phenotype","volume":"44","author":"Laakkonen","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib144","doi-asserted-by":"crossref","first-page":"273","DOI":"10.7589\/0090-3558-29.2.273","article-title":"Pneumocystis carinii and helminth parasitism in shrews Sorex araneus and Sorex caecutiens","volume":"29","author":"Laakkonen","year":"1993","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib145","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1016\/0035-9203(75)90109-1","article-title":"Pneumocystis and Histoplasma infections in wild animals from the Amazon region of Brazil","volume":"69","author":"Lainson","year":"1975","journal-title":"Trans. R. Soc. Trop. Med. Hyg."},{"key":"10.1016\/j.meegid.2008.05.001_bib146","doi-asserted-by":"crossref","first-page":"482","DOI":"10.1093\/infdis\/175.2.482","article-title":"Dihydropteroate synthase polymorphisms in Pneumocystis carinii","volume":"175","author":"Lane","year":"1997","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib147","doi-asserted-by":"crossref","first-page":"66","DOI":"10.3201\/eid1301.060315","article-title":"Primary Pneumocystis infection in infants hospitalized with acute respiratory tract infection","volume":"13","author":"Larsen","year":"2007","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib148","doi-asserted-by":"crossref","first-page":"S54","DOI":"10.1111\/j.1550-7408.1996.tb04989.x","article-title":"Biodiversity of French and Italian human Pneumocystis carinii","volume":"43","author":"Latouche","year":"1996","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib149","doi-asserted-by":"crossref","first-page":"383","DOI":"10.1128\/JCM.35.2.383-387.1997","article-title":"Biodiversity of Pneumocystis carinii hominis: typing with different DNA regions","volume":"35","author":"Latouche","year":"1997","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib150","doi-asserted-by":"crossref","first-page":"3052","DOI":"10.1128\/JCM.32.12.3052-3053.1994","article-title":"Preliminary results of Pneumocystis carinii strain differentiation by using molecular biology","volume":"32","author":"Latouche","year":"1994","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib151","doi-asserted-by":"crossref","first-page":"734","DOI":"10.1128\/JCM.36.3.734-741.1998","article-title":"Update on Pneumocystis carinii f.sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes","volume":"36","author":"Lee","year":"1998","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib152","doi-asserted-by":"crossref","first-page":"748","DOI":"10.1016\/j.micinf.2005.01.011","article-title":"Surfactant protein A limits Pneumocystis murina infection in immunosuppressed C3H\/HeN mice and modulates host response during infection","volume":"7","author":"Linke","year":"2005","journal-title":"Microbes Infect."},{"key":"10.1016\/j.meegid.2008.05.001_bib153","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1099\/jmm.0.46190-0","article-title":"Efficient resolution of Pneumocystis murina infection in surfactant protein A-deficient mice following withdrawal of corticosteroid-induced immunosuppression","volume":"55","author":"Linke","year":"2006","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib154","doi-asserted-by":"crossref","first-page":"1547","DOI":"10.1128\/IAI.57.5.1547-1555.1989","article-title":"Properties of the major antigens of rat and human Pneumocystis carinii","volume":"57","author":"Linke","year":"1989","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib155","doi-asserted-by":"crossref","first-page":"943","DOI":"10.1086\/319252","article-title":"Immunosuppressed surfactant protein A-deficient mice have increased susceptibility to Pneumocystis carinii infection","volume":"183","author":"Linke","year":"2001","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib156","doi-asserted-by":"crossref","first-page":"3763","DOI":"10.1093\/nar\/20.14.3763","article-title":"Sequence and variability of the 5.8S and 26S rRNA genes of Pneumocystis carinii","volume":"20","author":"Liu","year":"1992","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.meegid.2008.05.001_bib157","doi-asserted-by":"crossref","first-page":"280","DOI":"10.1111\/j.1748-5827.1996.tb02380.x","article-title":"Pneumocystis carinii in the miniature dachshund: case report and literature review","volume":"37","author":"Lobetti","year":"1996","journal-title":"J. Small Anim. Pract."},{"key":"10.1016\/j.meegid.2008.05.001_bib158","doi-asserted-by":"crossref","first-page":"2904","DOI":"10.1128\/JCM.32.12.2904-2912.1994","article-title":"Typing of Pneumocystis carinii strains that infect humans based on nucleotide sequence variations of internal transcribed spacers of rRNA genes","volume":"32","author":"Lu","year":"1994","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib159","doi-asserted-by":"crossref","first-page":"1969","DOI":"10.1086\/315148","article-title":"Pneumocystis carinii dihydropteroate synthase but not dihydrofolate reductase gene mutations correlate with prior trimethoprim-sulfamethoxazole or dapsone use","volume":"180","author":"Ma","year":"1999","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib160","doi-asserted-by":"crossref","first-page":"1485","DOI":"10.1086\/324208","article-title":"Genetic divergence of the dihydrofolate reductase and dihydropteroate synthase genes in Pneumocystis carinii from 7 different host species","volume":"184","author":"Ma","year":"2001","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib161","doi-asserted-by":"crossref","first-page":"420","DOI":"10.1111\/j.1550-7408.1984.tb02989.x","article-title":"Sporogony in Pneumocystis carinii: synaptonemal complexes and meiotic nuclear divisions observed in precysts","volume":"31","author":"Matsumoto","year":"1984","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib162","series-title":"Animal Species and Evolution","author":"Mayr","year":"1963"},{"key":"10.1016\/j.meegid.2008.05.001_bib163","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1111\/j.1574-695X.1998.tb01189.x","article-title":"Epidemiological and taxonomic impact of Pneumocystis biodiversity","volume":"22","author":"Mazars","year":"1998","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib164","doi-asserted-by":"crossref","first-page":"655","DOI":"10.1093\/infdis\/175.3.655","article-title":"Isoenzyme diversity in Pneumocystis carinii from rats, mice and rabbits","volume":"175","author":"Mazars","year":"1997","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib165","doi-asserted-by":"crossref","first-page":"S39","DOI":"10.1111\/j.1550-7408.1997.tb05763.x","article-title":"Detection of Pneumocystis in European wild animals","volume":"44","author":"Mazars","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib166","doi-asserted-by":"crossref","first-page":"26","DOI":"10.1111\/j.1550-7408.1995.tb01536.x","article-title":"Polymorphism of Pneumocystis carinii from different host species","volume":"42","author":"Mazars","year":"1995","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib167","first-page":"S104","article-title":"Genomic and isoenzymatic markers of Pneumocystis from different host species","volume":"41","author":"Mazars","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib168","first-page":"S66","article-title":"PCR amplification of DNA sequences from the transcription factor IID and cation transporting ATPase genes in Pneumocystis carinii","volume":"38","author":"Meade","year":"1991","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib169","doi-asserted-by":"crossref","first-page":"298","DOI":"10.1111\/j.1550-7408.1995.tb01584.x","article-title":"Cloning and characterization of an ATPase gene from Pneumocystis carinii which closely resembles fungal H+ ATPases","volume":"42","author":"Meade","year":"1995","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib170","doi-asserted-by":"crossref","first-page":"245","DOI":"10.3201\/eid1102.040487","article-title":"Pneumocystis jirovecii in general population","volume":"11","author":"Medrano","year":"2005","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib171","doi-asserted-by":"crossref","first-page":"1555","DOI":"10.1128\/JCM.40.4.1555-1557.2002","article-title":"Probable mother-to-infant transmission of Pneumocystis carinii f.sp. hominis infection","volume":"40","author":"Miller","year":"2002","journal-title":"J. Clin. Microbiol."},{"issue":"12(1)","key":"10.1016\/j.meegid.2008.05.001_bib172","doi-asserted-by":"crossref","first-page":"R28","DOI":"10.1186\/cc6806","article-title":"Critical care management and outcome of severe Pneumocystis pneumonia in patients with and without HIV infection","volume":"25","author":"Monnet","year":"2008","journal-title":"Crit. Care"},{"key":"10.1016\/j.meegid.2008.05.001_bib173","doi-asserted-by":"crossref","first-page":"43","DOI":"10.1080\/15412550701817656","article-title":"Pneumocystis: a novel pathogen in chronic obstructive pulmonary disease?","volume":"5","author":"Morris","year":"2008","journal-title":"COPD"},{"key":"10.1016\/j.meegid.2008.05.001_bib174","doi-asserted-by":"crossref","first-page":"4563","DOI":"10.1128\/JCM.39.12.4563-4565.2001","article-title":"Rapid PCR-single-strand conformation polymorphism method to differentiate and estimate relative abundance of Pneumocystis carinii special forms infecting rats","volume":"39","author":"Nahimana","year":"2001","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib175","doi-asserted-by":"crossref","first-page":"2497","DOI":"10.1073\/pnas.051611498","article-title":"Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms","volume":"98","author":"Nei","year":"2001","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.meegid.2008.05.001_bib176","doi-asserted-by":"crossref","first-page":"771","DOI":"10.1111\/j.1699-0463.1998.tb00223.x","article-title":"Different ultrastructural morphology of Pneumocystis carinii derived from mice, rats, and rabbits","volume":"106","author":"Nielsen","year":"1998","journal-title":"APMIS"},{"key":"10.1016\/j.meegid.2008.05.001_bib177","first-page":"883","article-title":"Phylogenetic relationships among Taphrina, Saitoella, and other fungi","volume":"12","author":"Nishida","year":"1993","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2008.05.001_bib178","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1111\/j.1550-7408.1995.tb01538.x","article-title":"Comparison of coding and spacer region sequences of chromosomal rRNA-coding genes of two sequevars of Pneumocystis carinii","volume":"42","author":"Ortiz-Rivera","year":"1995","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib179","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1007\/BF00931702","article-title":"High osmotic pressure enables fine ultrastructural and cytochemical studies on Pneumocystis carinii. I: Epon embedding","volume":"78","author":"Palluault","year":"1992","journal-title":"Parasitol. Res."},{"key":"10.1016\/j.meegid.2008.05.001_bib180","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1006\/mcpr.1999.0229","article-title":"Discrimination of rat-derived Pneumocystis carinii f.sp. carinii and Pneumocystis carinii f.sp. ratti using the polymerase chain reaction","volume":"13","author":"Palmer","year":"1999","journal-title":"Mol. Cell. Probes"},{"key":"10.1016\/j.meegid.2008.05.001_bib181","doi-asserted-by":"crossref","first-page":"4954","DOI":"10.1128\/AEM.66.11.4954-4961.2000","article-title":"Population structure of rat-derived Pneumocystis carinii in Danish wild rats","volume":"66","author":"Palmer","year":"2000","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib182","first-page":"177","article-title":"The first observation of congenital pneumocystic pneumonia in a fully developed stillborn child","volume":"198","author":"Pavlica","year":"1962","journal-title":"Ann. Paediatr."},{"key":"10.1016\/j.meegid.2008.05.001_bib183","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1354\/vp.36-6-621","article-title":"A case of interstitial pneumonia associated with Pneumocystis carinii in a foal","volume":"36","author":"Perron-Lepage","year":"1999","journal-title":"Vet. Pathol."},{"key":"10.1016\/j.meegid.2008.05.001_bib184","first-page":"S108","article-title":"DNA analysis of Pneumocystis carinii infecting Finnish and English shrews","volume":"41","author":"Peters","year":"1994","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib185","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1128\/JCM.32.1.213-216.1994","article-title":"Pneumocystis carinii pneumonia in thoroughbred foals: identification of a genetically distinct organism by DNA amplification","volume":"32","author":"Peters","year":"1994","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib186","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1016\/j.mib.2005.06.010","article-title":"Pneumocystis: not just pneumonia","volume":"8","author":"Peterson","year":"2005","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib187","first-page":"S94","article-title":"Impaction versus filtration for the detection of Pneumocystis carinii DNA in air","volume":"46","author":"Philippe","year":"1999","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib188","doi-asserted-by":"crossref","first-page":"1347","DOI":"10.1111\/j.1365-2958.1991.tb00781.x","article-title":"Mitochondrial gene sequences show fungal homology for Pneumocystis carinii","volume":"5","author":"Pixley","year":"1991","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib189","doi-asserted-by":"crossref","first-page":"817","DOI":"10.1093\/bioinformatics\/14.9.817","article-title":"MODELTEST: testing the model of DNA substitution","volume":"14","author":"Posada","year":"1998","journal-title":"Bioinformatics"},{"key":"10.1016\/j.meegid.2008.05.001_bib190","doi-asserted-by":"crossref","first-page":"1985","DOI":"10.1128\/AAC.42.8.1985","article-title":"Efficacy of MK-991 (L-743,872), a semisynthetic pneumocandin, in murine models of Pneumocystis carinii","volume":"42","author":"Powles","year":"1998","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.meegid.2008.05.001_bib191","doi-asserted-by":"crossref","first-page":"S58","DOI":"10.1111\/j.1550-7408.1997.tb05778.x","article-title":"Pneumocystosis in humans or in corticosteroid-untreated animal models: interactions between pulmonary surfactant changes and Pneumocystis carinii in vivo or in vitro growth","volume":"44","author":"Pr\u00e9vost","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib192","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1016\/j.virusres.2005.05.008","article-title":"A murine model of dual infection with cytomegalovirus and Pneumocystis carinii: effects of virus-induced immunomodulation on disease progression","volume":"114","author":"Qureshi","year":"2005","journal-title":"Virus Res."},{"key":"10.1016\/j.meegid.2008.05.001_bib193","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1111\/j.1574-695X.1998.tb01195.x","article-title":"Response to Pneumocystis infection in an immunocompetent host","volume":"22","author":"Rajagopalan-Levasseur","year":"1998","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib194","doi-asserted-by":"crossref","first-page":"372","DOI":"10.1136\/vr.140.14.372","article-title":"Pneumocystis carinii pneumonia in two cavalier King Charles spaniels","volume":"140","author":"Ramsey","year":"1987","journal-title":"Vet. Rec."},{"key":"10.1016\/j.meegid.2008.05.001_bib195","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1111\/j.1550-7408.2005.00072.x","article-title":"Pneumocystis and Trypanosoma cruzi: nomenclature and typifications","volume":"53","author":"Redhead","year":"2006","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib196","doi-asserted-by":"crossref","first-page":"1572","DOI":"10.1093\/bioinformatics\/btg180","article-title":"Mr. Bayes 3: Bayesian phylogenetic inference under mixed models","volume":"19","author":"Ronquist","year":"2003","journal-title":"Bioinformatics"},{"key":"10.1016\/j.meegid.2008.05.001_bib197","series-title":"Pneumocystis carinii Pneumonia","first-page":"25","article-title":"Pneumocystis carinii cell structure","author":"Ruffolo","year":"1994"},{"key":"10.1016\/j.meegid.2008.05.001_bib198","doi-asserted-by":"crossref","first-page":"701","DOI":"10.1080\/13693780701531156","article-title":"Exploring transplacental transmission of Pneumocystis oryctolagi in first-time pregnant and multiparous rabbit does","volume":"45","author":"Sanchez","year":"2007","journal-title":"Med. Mycol."},{"key":"10.1016\/j.meegid.2008.05.001_bib199","doi-asserted-by":"crossref","first-page":"1729","DOI":"10.1086\/315438","article-title":"The major surface glycoprotein expression sites of two special forms of rat Pneumocystis carinii differ in structure","volume":"181","author":"Schaffzin","year":"2000","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib200","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1093\/infdis\/168.2.421","article-title":"DNA amplification in experimental pneumocystosis: characterization of serum Pneumocystis carinii DNA and potential P. carinii carrier states","volume":"168","author":"Sepkowitz","year":"1993","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib201","doi-asserted-by":"crossref","first-page":"437","DOI":"10.1186\/BF03548020","article-title":"Pneumocystis carinii in large domestic animals in Denmark. A preliminary report","volume":"30","author":"Settnes","year":"1989","journal-title":"Acta Vet. Scand."},{"key":"10.1016\/j.meegid.2008.05.001_bib202","first-page":"S174","article-title":"Host-parasite relationship in Pneumocystis carinii infection: activation of the plasmalemmal vesicular system in type I alveolar epithelial cells","volume":"38","author":"Settnes","year":"1991","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib203","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1128\/CDLI.3.1.119-127.1996","article-title":"Diversity of host species and strains of Pneumocystis carinii is based on rRNA sequences","volume":"3","author":"Shah","year":"1996","journal-title":"Clin. Diagn. Lab. Immunol."},{"key":"10.1016\/j.meegid.2008.05.001_bib204","doi-asserted-by":"crossref","first-page":"441","DOI":"10.2307\/3282686","article-title":"Pneumocystis carinii infection in corticosteroid-treated cats","volume":"76","author":"Shiota","year":"1990","journal-title":"J. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib205","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/0166-6851(91)90042-5","article-title":"Pneumocystis carinii organisms derived from rat and human hosts are genetically distinct","volume":"45","author":"Sinclair","year":"1991","journal-title":"Mol. Biochem. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib206","doi-asserted-by":"crossref","first-page":"355","DOI":"10.1093\/infdis\/160.2.355","article-title":"The young rabbit: a nonimmunosuppressed model for Pneumocystis carinii pneumonia","volume":"160","author":"Soulez","year":"1989","journal-title":"J. Infect. Dis."},{"issue":"Suppl.","key":"10.1016\/j.meegid.2008.05.001_bib207","first-page":"123","article-title":"Introduction of Pneumocystis carinii in a colony of SCID mice","volume":"38","author":"Soulez","year":"1991","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib208","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1080\/00365540500353259","article-title":"Disseminated cytomegalovirus infection associated with Pneumocystis carinii pneumonia in a previously normal infant","volume":"38","author":"Sritippayawan","year":"2006","journal-title":"Scand. J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib209","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1542\/peds.66.1.56","article-title":"Pneumocystis carinii pneumonitis in young immunocompetent infants","volume":"66","author":"Stagno","year":"1980","journal-title":"Pediatrics"},{"key":"10.1016\/j.meegid.2008.05.001_bib210","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1111\/j.1550-7408.1998.tb04554.x","article-title":"The HSP70 gene family in Pneumocystis carinii: molecular and phylogenetic characterization of cytoplasmic members","volume":"45","author":"Stedman","year":"1998","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib211","doi-asserted-by":"crossref","first-page":"15","DOI":"10.1111\/j.1574-695X.1998.tb01183.x","article-title":"The genome of Pneumocystis carinii","volume":"22","author":"Stringer","year":"1998","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib212","doi-asserted-by":"crossref","first-page":"S184","DOI":"10.1111\/j.1550-7408.2001.tb00512.x","article-title":"New nomenclature for the genus Pneumocystis","author":"Stringer","year":"2001","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib213","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1111\/j.1550-7408.1993.tb04468.x","article-title":"Molecular genetic distinction of Pneumocystis carinii from rats and humans","volume":"40","author":"Stringer","year":"1993","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib214","doi-asserted-by":"crossref","first-page":"S5","DOI":"10.1111\/j.1550-7408.1997.tb05736.x","article-title":"Pneumocystis taxonomy and nomenclature: an update","volume":"44","author":"Stringer","year":"1997","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib215","doi-asserted-by":"crossref","first-page":"S14","DOI":"10.1111\/j.1550-7408.1989.tb02670.x","article-title":"Sequence from ribosomal RNA of Pneumocystis carinii compared to those of four fungi suggests an ascomycetous affinity","volume":"36","author":"Stringer","year":"1989","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib216","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1016\/0014-4894(89)90130-6","article-title":"Pneumocystis carinii: sequence from ribosomal RNA implies a close relationship with fungi","volume":"68","author":"Stringer","year":"1989","journal-title":"Exp. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib217","doi-asserted-by":"crossref","first-page":"996","DOI":"10.3852\/mycologia.98.6.996","article-title":"Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas","volume":"298","author":"Sugiyama","year":"2006","journal-title":"Mycologia"},{"key":"10.1016\/j.meegid.2008.05.001_bib218","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1111\/j.1550-7408.1995.tb01534.x","article-title":"Transcription factor genes from rat Pneumocystis carinii","volume":"42","author":"Sunkin","year":"1995","journal-title":"J. Eukaryot. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib219","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s004300050098","article-title":"Pneumocystis carinii infection in young non-immunosuppressed rabbits. Kinetics of infection and of the primary specific immune response","volume":"188","author":"Tamburrini","year":"1999","journal-title":"Med. Microbiol. Immunol."},{"key":"10.1016\/j.meegid.2008.05.001_bib220","doi-asserted-by":"crossref","first-page":"517","DOI":"10.1378\/chest.07-1131","article-title":"COPD in Asia: where east meets west","volume":"133","author":"Tan","year":"2008","journal-title":"Chest"},{"key":"10.1016\/j.meegid.2008.05.001_bib221","doi-asserted-by":"crossref","first-page":"2491","DOI":"10.1128\/JCM.36.9.2491-2494.1998","article-title":"Determination of copy number of rRNA genes in Pneumocystis carinii f.sp. hominis","volume":"36","author":"Tang","year":"1998","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib222","doi-asserted-by":"crossref","first-page":"425","DOI":"10.1111\/j.1365-2958.1993.tb01585.x","article-title":"Pneumocystis carinii and the ustomycetous red yeast fungi","volume":"8","author":"Taylor","year":"1993","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib223","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1006\/fgbi.2000.1228","article-title":"Phylogenetic species recognition and species concepts in fungi","volume":"31","author":"Taylor","year":"2000","journal-title":"Fungal Genet. Biol."},{"key":"10.1016\/j.meegid.2008.05.001_bib224","series-title":"Ascomycete Systematics. Problems and Perspectives in the Nineties","first-page":"233","article-title":"Molecular evolution of ascomycete fungi: phylogeny and conflict","author":"Taylor","year":"1994"},{"key":"10.1016\/j.meegid.2008.05.001_bib225","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1165\/ajrcmb.18.3.3122","article-title":"Pneumocystis carinii contains a functional cell-division-cycle Cdc2 homologue","volume":"18","author":"Thomas","year":"1998","journal-title":"Am. J. Respir. Cell. Mol. Biol."},{"key":"10.1016\/j.meegid.2008.05.001_bib226","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1023\/A:1013258109954","article-title":"Y-chromosome and mitochondrial markers in Macaca fascicularis indicate introgression with Indochinese M. mulatta and a biogeographic barrier in the Isthmus of Kra","volume":"23","author":"Tosi","year":"2002","journal-title":"Int. J. Primatol."},{"key":"10.1016\/j.meegid.2008.05.001_bib227","doi-asserted-by":"crossref","first-page":"667","DOI":"10.3201\/eid1004.030451","article-title":"Pneumocystis jirovecii dihydropteroate synthase genotypes in immunocompetent infants and immunosuppressed adults, Amiens, France","volume":"10","author":"Totet","year":"2004","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib228","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1093\/infdis\/174.1.141","article-title":"Genetic diversity at the internal transcribed spacer regions of the rRNA operon among isolates of Pneumocystis carinii from AIDS patients with recurrent pneumonia","volume":"174","author":"Tsolaki","year":"1996","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib229","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1128\/JCM.36.1.90-93.1998","article-title":"Pre-AIDS era isolates of Pneumocystis carinii f.sp. hominis: high genotype similarity with contemporary isolates","volume":"36","author":"Tsolaki","year":"1998","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib230","doi-asserted-by":"crossref","first-page":"12","DOI":"10.3181\/00379727-5-5","article-title":"A sporozoon found in the peptic glands of the common mouse","volume":"5","author":"Tyzzer","year":"1907","journal-title":"Proc. Soc. Exp. Biol. Med."},{"key":"10.1016\/j.meegid.2008.05.001_bib231","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1097\/01.tp.0000280546.91617.6c","article-title":"Efficacy of caspofungin addition to trimethoprim-sulfamethoxazole treatment for severe pneumocystis pneumonia in solid organ transplant recipients","volume":"84","author":"Utili","year":"2007","journal-title":"Transplantation"},{"key":"10.1016\/j.meegid.2008.05.001_bib232","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1086\/319340","article-title":"Search for primary infection by Pneumocystis carinii in a cohort of normal, healthy infants","volume":"32","author":"Vargas","year":"2001","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib233","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1093\/infdis\/172.2.506","article-title":"Limited persistence in and subsequent elimination of Pneumocystis carinii from the lungs after P. carinii pneumonia","volume":"172","author":"Vargas","year":"1995","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib234","doi-asserted-by":"crossref","first-page":"1489","DOI":"10.1086\/313521","article-title":"Association of primary Pneumocystis carinii infection and sudden infant death syndrome","volume":"29","author":"Vargas","year":"1999","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib235","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1086\/426451","article-title":"Detection of Pneumocystis carinii f.sp. hominis and viruses in presumably immunocompetent infants who died in the hospital or in the community","volume":"191","author":"Vargas","year":"2005","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib236","doi-asserted-by":"crossref","first-page":"290","DOI":"10.1128\/IAI.64.1.290-297.1996","article-title":"Antigenic differences associated with genetically distinct Pneumocystis carinii from rats","volume":"64","author":"Vasquez","year":"1996","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib237","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1111\/j.1550-7408.1970.tb04715.x","article-title":"Pneumocystis carinii Delano\u00eb, its ultrastructure and ultrastructural affinities","volume":"17","author":"Vavra","year":"1970","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib238","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1051\/parasite\/2008151053","article-title":"Hypobaric hypoxia-related impairment of pulmonary surfactant did not favour Pneumocystis carinii Frenkel 1999 growth in non-immunocompromised rats","volume":"15","author":"Vives","year":"2008","journal-title":"Parasite"},{"key":"10.1016\/j.meegid.2008.05.001_bib239","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1016\/0378-1119(92)90378-3","article-title":"The multifunctional folic acid synthesis fas gene of Pneumocystis carinii appears to encode dihydropteroate synthase and hydroxymethyldihydropterin pyrophosphokinase","volume":"112","author":"Volpe","year":"1992","journal-title":"Gene"},{"key":"10.1016\/j.meegid.2008.05.001_bib240","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1111\/j.1574-695X.1998.tb01182.x","article-title":"Genetic heterogeneity in Pneumocystis carinii: an introduction","volume":"22","author":"Wakefield","year":"1998","journal-title":"FEMS Immunol. Med. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib241","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1128\/JCM.34.7.1754-1759.1996","article-title":"DNA sequences identical to Pneumocystis carinii f.sp. carinii and Pneumocystis carinii f.sp. hominis in samples of air spora","volume":"34","author":"Wakefield","year":"1996","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib242","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1093\/bmb\/61.1.175","article-title":"Pneumocystis carinii","volume":"61","author":"Wakefield","year":"2002","journal-title":"Br. Med. Bull."},{"key":"10.1016\/j.meegid.2008.05.001_bib243","doi-asserted-by":"crossref","first-page":"2959","DOI":"10.1128\/JCM.32.12.2959-2961.1994","article-title":"Genetic diversity in human-derived Pneumocystis carinii isolates from four geographical locations shown by analysis of mitochondrial rRNA gene sequences","volume":"32","author":"Wakefield","year":"1994","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib244","doi-asserted-by":"crossref","first-page":"426","DOI":"10.1111\/j.1365-2958.1993.tb01586.x","article-title":"Pneumocystis carinii and the ustomycetous red yeast fungi","volume":"8","author":"Wakefield","year":"1993","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib245","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1111\/j.1699-0463.1997.tb00576.x","article-title":"Identification of porcine Pneumocystis carinii as a genetically distinct organism by DNA amplification","volume":"105","author":"Wakefield","year":"1997","journal-title":"APMIS"},{"key":"10.1016\/j.meegid.2008.05.001_bib246","doi-asserted-by":"crossref","first-page":"1903","DOI":"10.1111\/j.1365-2958.1992.tb01363.x","article-title":"Pneumocystis carinii shows DNA homology with the Ustomycetous red yeast fungi","volume":"6","author":"Wakefield","year":"1992","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.meegid.2008.05.001_bib247","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/0166-6851(90)90131-5","article-title":"Amplification of mitochondrial ribosomal RNA sequences from Pneumocystis carinii DNA of rat and human origin","volume":"43","author":"Wakefield","year":"1990","journal-title":"Mol. Biochem. Parasitol."},{"key":"10.1016\/j.meegid.2008.05.001_bib248","doi-asserted-by":"crossref","first-page":"800","DOI":"10.1016\/0035-9203(90)90087-U","article-title":"Infection with Pneumocystis carinii is prevalent in healthy Gambian children","volume":"84","author":"Wakefield","year":"1990","journal-title":"Trans. R. Soc. Trop. Med. Hyg."},{"key":"10.1016\/j.meegid.2008.05.001_bib249","doi-asserted-by":"crossref","first-page":"1767","DOI":"10.1086\/314509","article-title":"Sequence polymorphisms in the Pneumocystis carinii cytochrome b gene and their association with atovaquone prophylaxis failure","volume":"178","author":"Walker","year":"1998","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2008.05.001_bib250","first-page":"64","article-title":"Comparison of pulsed field gel electrophoresis karyotypes of Pneumocystis carinii derived from rat lung, cell culture and ferret lung","volume":"38","author":"Weinberg","year":"1991","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib251","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1093\/dnares\/2.2.77","article-title":"Isoform diversity and tandem duplication of the glycoprotein A gene in ferret Pneumocystis carinii","volume":"2","author":"Wright","year":"1995","journal-title":"DNA Res."},{"key":"10.1016\/j.meegid.2008.05.001_bib252","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1016\/0378-1119(95)00704-0","article-title":"Cloning and characterization of a conserved region of human and rhesus macaque Pneumocystis carinii gpA","volume":"167","author":"Wright","year":"1995","journal-title":"Gene"},{"key":"10.1016\/j.meegid.2008.05.001_bib253","doi-asserted-by":"crossref","first-page":"5","DOI":"10.4065\/71.1.5","article-title":"Pneumocystis carinii pneumonia in patients without acquired immunodeficiency syndrome: associated illness and prior corticosteroid therapy","volume":"71","author":"Yale","year":"1996","journal-title":"Mayo Clin. Proc."},{"key":"10.1016\/j.meegid.2008.05.001_bib254","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1111\/j.1550-7408.1989.tb02696.x","article-title":"Ultrastructural studies of Pneumocystis carinii","volume":"36","author":"Yoshida","year":"1989","journal-title":"J. Protozool."},{"key":"10.1016\/j.meegid.2008.05.001_bib255","doi-asserted-by":"crossref","first-page":"4140","DOI":"10.1128\/IAI.60.10.4140-4145.1992","article-title":"Fungus-specific translation elongation factor 3 gene present in Pneumocystis carinii","volume":"60","author":"Ypma-Wong","year":"1992","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2008.05.001_bib256","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1016\/0378-1119(93)90553-F","article-title":"Cloning and characterization of an alpha-tubulin-encoding gene from rat-derived Pneumocystis carinii","volume":"123","author":"Zhang","year":"1993","journal-title":"Gene"}],"container-title":["Infection, Genetics and Evolution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134808001196?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134808001196?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2023,5,18]],"date-time":"2023-05-18T07:24:41Z","timestamp":1684394681000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1567134808001196"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,9]]},"references-count":256,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2008,9]]}},"alternative-id":["S1567134808001196"],"URL":"https:\/\/doi.org\/10.1016\/j.meegid.2008.05.001","relation":{},"ISSN":["1567-1348"],"issn-type":[{"value":"1567-1348","type":"print"}],"subject":[],"published":{"date-parts":[[2008,9]]}}}