{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T15:54:57Z","timestamp":1768319697740,"version":"3.49.0"},"reference-count":128,"publisher":"Elsevier BV","issue":"7","license":[{"start":{"date-parts":[[2012,10,1]],"date-time":"2012-10-01T00:00:00Z","timestamp":1349049600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["Infection, Genetics and Evolution"],"published-print":{"date-parts":[[2012,10]]},"DOI":"10.1016\/j.meegid.2012.04.011","type":"journal-article","created":{"date-parts":[[2012,5,7]],"date-time":"2012-05-07T21:05:12Z","timestamp":1336424712000},"page":"1481-1491","source":"Crossref","is-referenced-by-count":8,"title":["Immunogenetic surveillance of HIV\/AIDS"],"prefix":"10.1016","volume":"12","author":[{"given":"Henry A.F.","family":"Stephens","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.meegid.2012.04.011_b0005","doi-asserted-by":"crossref","first-page":"3027","DOI":"10.1084\/jem.20070695","article-title":"Differential natural killer cell-mediated inhibition of HIV-1 replication based on distinct KIR\/HLA subtypes","volume":"204","author":"Alter","year":"2007","journal-title":"J. Exp. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0010","doi-asserted-by":"crossref","first-page":"9668","DOI":"10.1128\/JVI.00341-08","article-title":"Ligand-independent exhaustion of killer immunoglobulin-like receptor-positive CD8+ T cells in human immunodeficiency virus type 1 infection","volume":"82","author":"Alter","year":"2008","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0015","doi-asserted-by":"crossref","first-page":"6798","DOI":"10.1128\/JVI.00256-09","article-title":"HLA class I subtype-dependent expansion of KIR3DS1+ and KIR3DL1+ NK cells during acute human immunodeficiency virus type 1 infection","volume":"83","author":"Alter","year":"2009","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0020","doi-asserted-by":"crossref","first-page":"1905","DOI":"10.1172\/JCI40913","article-title":"IL-10 induces aberrant deletion of dendritic cells by natural killer cells in the context of HIV infection","volume":"120","author":"Alter","year":"2010","journal-title":"J. Clin. Invest."},{"key":"10.1016\/j.meegid.2012.04.011_b0025","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1038\/nature10237","article-title":"HIV-1 adaptation to NK-cell-mediated immune pressure","volume":"476","author":"Alter","year":"2011","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0030","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1111\/j.1399-0039.2009.01345.x","article-title":"High-resolution, high-throughput HLA genotyping by next-generation sequencing","volume":"74","author":"Bentley","year":"2009","journal-title":"Tissue Antigens"},{"key":"10.1016\/j.meegid.2012.04.011_b0630","series-title":"AIDS in Asia","first-page":"317","article-title":"Transmission of HIV\/AIDS and other infections in Southeast Asia: cultural and genetic factors","author":"Beyrer","year":"2004"},{"key":"10.1016\/j.meegid.2012.04.011_b0035","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1086\/314556","article-title":"Epidemiologic and biologic characterization of a cohort of human immunodeficiency virus type 1 highly exposed, persistently seronegative female sex workers in Northern Thailand","volume":"179","author":"Beyrer","year":"1999","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0045","doi-asserted-by":"crossref","first-page":"1583","DOI":"10.1126\/science.1131528","article-title":"Founder effects in the assessment of HIV polymorphisms and HLA allele associations","volume":"315","author":"Bhattacharya","year":"2007","journal-title":"Science"},{"key":"10.1016\/j.meegid.2012.04.011_b0050","doi-asserted-by":"crossref","DOI":"10.1038\/329506a0","article-title":"Structure of the human class I histocompatibility antigen HLA-A2","volume":"329","author":"Bjorkman","year":"1987","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0055","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1038\/329512a0","article-title":"The foreign antigen binding site and T cell recognition regions of class I histocompatibility antigens","volume":"329","author":"Bjorkman","year":"1987","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0060","doi-asserted-by":"crossref","first-page":"703","DOI":"10.1089\/088922201750236988","article-title":"An HLA-directed molecular and bioinformatics approach identifies new HLA-A11 HIV-1 subtype E cytotoxic T lymphocyte epitopes in HIV-1-infected Thais","volume":"17","author":"Bond","year":"2001","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.meegid.2012.04.011_b0065","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1097\/00002030-199604000-00011","article-title":"Progression of HIV: follow up of Edinburgh injecting drug users with narrow seroconversion intervals in 1983\u20131985","volume":"10","author":"Brettle","year":"1996","journal-title":"AIDS"},{"key":"10.1016\/j.meegid.2012.04.011_b0635","doi-asserted-by":"crossref","first-page":"1881","DOI":"10.1016\/S0140-6736(08)61591-3","article-title":"Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the Step Study): a double-blind, randomised, placebo-controlled, test-of-concept trial","volume":"372","author":"Buchbinder","year":"2008","journal-title":"Lancet"},{"key":"10.1016\/j.meegid.2012.04.011_b0075","doi-asserted-by":"crossref","first-page":"1505","DOI":"10.1097\/00007890-199712150-00001","article-title":"Molecular HLA typing\u2014the brave new world","volume":"64","author":"Bunce","year":"1997","journal-title":"Transplantation"},{"key":"10.1016\/j.meegid.2012.04.011_b0080","doi-asserted-by":"crossref","first-page":"316","DOI":"10.1126\/science.1094620","article-title":"Public health. A sound rationale needed for phase III HIV-1 vaccine trials","volume":"303","author":"Burton","year":"2004","journal-title":"Science"},{"key":"10.1016\/j.meegid.2012.04.011_b0085","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1111\/j.0001-2815.2004.00192.x","article-title":"Differentiation between African populations is evidenced by the diversity of alleles and haplotypes of HLA class I loci","volume":"63","author":"Cao","year":"2004","journal-title":"Tissue Antigens"},{"key":"10.1016\/j.meegid.2012.04.011_b0090","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1038\/35052543","article-title":"Association study designs for complex diseases","volume":"2","author":"Cardon","year":"2001","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.meegid.2012.04.011_b0095","doi-asserted-by":"crossref","first-page":"5222","DOI":"10.4049\/jimmunol.175.8.5222","article-title":"KIR3DL1 polymorphisms that affect NK cell inhibition by HLA-Bw4 ligand","volume":"175","author":"Carr","year":"2005","journal-title":"J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0640","doi-asserted-by":"crossref","first-page":"1748","DOI":"10.1126\/science.283.5408.1748","article-title":"HLA and HIV-1: heterozgote advantage and B*35-Cw*04 disadvantage","volume":"283","author":"Carrington","year":"1999","journal-title":"Science"},{"issue":"174\u2013182","key":"10.1016\/j.meegid.2012.04.011_b0105","first-page":"1997","article-title":"HLA-A, -B, -DRB1, -DQA1 and DQB1 polymorphism in Thais","volume":"53","author":"Chandanayingyong","year":"1997","journal-title":"Hum. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0110","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1038\/34929","article-title":"HIV-1 Nef protein protects infected primary cells against killing by cytotoxic T lymphocytes","volume":"391","author":"Collins","year":"1998","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0115","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1034\/j.1399-0039.2000.560403.x","article-title":"Development of a PCR-SSOP approach capable of defining the natural killer cell inhibitory receptor (KIR) gene sequence repertoires","volume":"56","author":"Crum","year":"2000","journal-title":"Tissue Antigens"},{"issue":"12","key":"10.1016\/j.meegid.2012.04.011_b0120","doi-asserted-by":"crossref","first-page":"e3907","DOI":"10.1371\/journal.pone.0003907","article-title":"Distinct genetic loci control plasma HIV-RNA and cellular HIV-DNA levels in HIV-1 infection: the ANRS Genome Wide Association 01 study","volume":"3","author":"Dalmasso","year":"2008","journal-title":"PLoS ONE"},{"key":"10.1016\/j.meegid.2012.04.011_b0125","doi-asserted-by":"crossref","first-page":"2279","DOI":"10.1056\/NEJMe0909972","article-title":"HIV vaccine trial results \u2013 an opening for further research","volume":"361","author":"Dolin","year":"2009","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0130","doi-asserted-by":"crossref","first-page":"856","DOI":"10.1086\/378071","article-title":"Influence of human leukocyte antigen-B22 alleles on the course of human immunodeficiency virus type 1 infection in 3 cohorts of white men","volume":"188","author":"Dorak","year":"2003","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0135","doi-asserted-by":"crossref","first-page":"2137","DOI":"10.1016\/S0140-6736(04)16505-7","article-title":"Transmission of HIV-1 and HLA-B allele-sharing within discordant heterosexual Zambian couples","volume":"303","author":"Dorak","year":"2004","journal-title":"Lancet"},{"key":"10.1016\/j.meegid.2012.04.011_b0140","doi-asserted-by":"crossref","first-page":"692","DOI":"10.1089\/0889222041524616","article-title":"Human leukocyte antigen (HLA) B*18 and protection against mother-to-child HIV type 1 transmission","volume":"20","author":"Farquhar","year":"2004","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.meegid.2012.04.011_b0145","doi-asserted-by":"crossref","first-page":"944","DOI":"10.1126\/science.1143767","article-title":"A whole genome association study of major determinants for host control of HIV-1","volume":"317","author":"Fellay","year":"2007","journal-title":"Science"},{"issue":"12","key":"10.1016\/j.meegid.2012.04.011_b0645","doi-asserted-by":"crossref","first-page":"e1000791","DOI":"10.1371\/journal.pgen.1000791","article-title":"Common genetic variation and control of HIV-1 in humans","volume":"5","author":"Fellay","year":"2009","journal-title":"PLoS Genet."},{"key":"10.1016\/j.meegid.2012.04.011_b0650","doi-asserted-by":"crossref","first-page":"773","DOI":"10.1093\/infdis\/jiq125","article-title":"Host genetic determinants of T cell responses to the MRKAd5 HIV-1 gag\/pol\/nef vaccine in the step trial","volume":"203","author":"Fellay","year":"2011","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0655","doi-asserted-by":"crossref","first-page":"765","DOI":"10.1093\/infdis\/jiq114","article-title":"An Ad5-vectored HIV-1 vaccine elicits cell-mediated immunity but does not affect disease progression in HIV-1-infected male subjects: results from a randomized placebo-controlled trial (the Step study)","volume":"203","author":"Fitzgerald","year":"2011","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0165","doi-asserted-by":"crossref","first-page":"1925","DOI":"10.4049\/jimmunol.170.4.1925","article-title":"Associations of MHC ancestral haplotypes with resistance\/susceptibility to AIDS disease development","volume":"170","author":"Flores-Villanueva","year":"2003","journal-title":"J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0170","doi-asserted-by":"crossref","first-page":"667","DOI":"10.1016\/j.it.2003.10.006","article-title":"Towards in silico prediction of immunogenic epitopes","volume":"24","author":"Flower","year":"2003","journal-title":"Trends Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0175","doi-asserted-by":"crossref","first-page":"10218","DOI":"10.1128\/JVI.79.16.10218-10225.2005","article-title":"HLA-B63 presents HLA-B57\/B58-restricted cytotoxic T-lymphocyte epitopes and is associated with low human immunodeficiency virus load","volume":"79","author":"Frahm","year":"2005","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0660","doi-asserted-by":"crossref","first-page":"173","DOI":"10.1038\/ni1281","article-title":"Control of human immunodeficiency virus by cytotoxic T lymphocytes targeting subdominant epitopes","volume":"7","author":"Frahm","year":"2006","journal-title":"Nat. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0185","doi-asserted-by":"crossref","first-page":"960","DOI":"10.1016\/j.humimm.2009.08.009","article-title":"Rapid high-throughput human leukocyte antigen typing by massively parallel pyrosequencing for high-resolution allele identification","volume":"70","author":"Gabriel","year":"2009","journal-title":"Hum. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0190","doi-asserted-by":"crossref","first-page":"436","DOI":"10.1038\/17130","article-title":"Origin of HIV-1 in the chimpanzee Pan trogolodytes trogolodytes","volume":"397","author":"Gao","year":"1999","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0665","doi-asserted-by":"crossref","first-page":"1668","DOI":"10.1056\/NEJM200105313442203","article-title":"Effect of a single amino acid change in MHC class I molecules on the rate of progression of AIDS","volume":"344","author":"Gao","year":"2001","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0200","doi-asserted-by":"crossref","first-page":"1290","DOI":"10.1038\/nm1333","article-title":"AIDS restriction HLA allotypes target distinct intervals of HIV-1 pathogenesis","volume":"11","author":"Gao","year":"2005","journal-title":"Nat. Med."},{"issue":"6","key":"10.1016\/j.meegid.2012.04.011_b0205","doi-asserted-by":"crossref","first-page":"683","DOI":"10.1038\/sj.gene.6364256","article-title":"Killer immunoglobulin-like receptors and HLA act both independently and synergistically to modify HIV disease progression","volume":"2005","author":"Gaudieri","year":"2005","journal-title":"Genes Immun."},{"issue":"6","key":"10.1016\/j.meegid.2012.04.011_b0210","doi-asserted-by":"crossref","first-page":"e11179","DOI":"10.1371\/journal.pone.0011179","article-title":"HLA-associated immune pressure on Gag protein in CRF01_AE-infected individuals and its association with plasma viral load","volume":"5","author":"Gesprasert","year":"2010","journal-title":"PLoS ONE"},{"key":"10.1016\/j.meegid.2012.04.011_b0670","doi-asserted-by":"crossref","first-page":"1235","DOI":"10.1093\/infdis\/jir020","article-title":"Under representation of the inhibitory KIR3DL1 molecule and the KIR3DL1+\/BW4+ complex in HIV exposed seronegative individuals","volume":"203","author":"Guerini","year":"2011","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0745","doi-asserted-by":"crossref","first-page":"1673","DOI":"10.1002\/eji.200425089","article-title":"Recognition of HLA-A3 and HLA-A11 by KIR3DL2 is peptide-specific","volume":"34","author":"Hansasuta","year":"2004","journal-title":"Eur. J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0220","doi-asserted-by":"crossref","first-page":"W13","DOI":"10.1097\/01.aids.0000247564.73009.bc","article-title":"Global and regional distribution of HIV-1 genetic subtypes and recombinants in 2004","volume":"20","author":"Hemelaar","year":"2006","journal-title":"AIDS"},{"key":"10.1016\/j.meegid.2012.04.011_b0675","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1097\/QAD.0b013e328342ff93","article-title":"Global trends in molecular epidemiology of HIV-1 during 2000\u20132007","volume":"25","author":"Hemelaar","year":"2011","journal-title":"AIDS"},{"issue":"Suppl. 3","key":"10.1016\/j.meegid.2012.04.011_b0680","doi-asserted-by":"crossref","first-page":"236","DOI":"10.1186\/1742-4690-6-S3-P236","article-title":"P16-07. HLA-B1302 is associated with viral control in clade CRF01_AE HIV-1 infection in Thailand","volume":"6","author":"Hempel","year":"2009","journal-title":"Retrovirology"},{"key":"10.1016\/j.meegid.2012.04.011_b0235","doi-asserted-by":"crossref","first-page":"6942","DOI":"10.4049\/jimmunol.162.11.6942","article-title":"New class I and II HLA alleles strongly associated with opposite patterns of progression to AIDS","volume":"162","author":"Hendel","year":"1999","journal-title":"J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0240","doi-asserted-by":"crossref","first-page":"1310","DOI":"10.1128\/JVI.01966-10","article-title":"Mapping the landscape of host\u2013pathogen evolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins","volume":"85","author":"Hertz","year":"2011","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0245","doi-asserted-by":"crossref","first-page":"957","DOI":"10.1084\/jem.20041214","article-title":"Combinations of maternal KIR and fetal HLA-C genes influence the risk of preeclampsia and reproductive success","volume":"200","author":"Hiby","year":"2004","journal-title":"J. Exp. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0685","doi-asserted-by":"crossref","first-page":"3667","DOI":"10.1128\/JVI.02689-06","article-title":"Control of human immunodeficiency virus type 1 is associated with HLA-B*13 and targeting of multiple gag-specific CD8+ T-cell epitopes","volume":"81","author":"Honeyborne","year":"2007","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0255","first-page":"889","article-title":"Gene map of the extended human MHC","volume":"5","author":"Horton","year":"2004","journal-title":"Nat. Rev. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0260","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1111\/j.1348-0421.2009.00150.x","article-title":"Human leukocyte antigen proifile in HIV-1 infected individuals and AIDS patients from Chongqing","volume":"53","author":"Huang","year":"2009","journal-title":"Chin. Microbiol. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0265","doi-asserted-by":"crossref","first-page":"4368","DOI":"10.4049\/jimmunol.0903745","article-title":"Adaptive interactions between HLA and HIV-1: highly divergent selection imposed by HLA class I molecules with common supertype motifs","volume":"184","author":"John","year":"2010","journal-title":"J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0270","doi-asserted-by":"crossref","first-page":"405","DOI":"10.1038\/nm0496-405","article-title":"Influence of combinations of human major histocompatibility complex genes on the course of HIV-1 infection","volume":"2","author":"Kaslow","year":"1996","journal-title":"Nat. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0690","doi-asserted-by":"crossref","first-page":"641","DOI":"10.1038\/nature07746","article-title":"Adaptation of HIV-1 to human leukocyte antigen class I","volume":"458","author":"Kawashima","year":"2009","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0280","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1086\/314862","article-title":"Consistent associations of HLA class I and II and transporter gene products with progression of HIV-1 infection in homosexual men","volume":"180","author":"Keet","year":"1999","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0695","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1038\/nature03113","article-title":"Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA","volume":"432","author":"Kiepiela","year":"2004","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0290","doi-asserted-by":"crossref","first-page":"428","DOI":"10.1097\/COH.0b013e32833d17ac","article-title":"HIV vaccines: lessons learned and the way forward","volume":"5","author":"Kim","year":"2010","journal-title":"Curr. Opin. HIV AIDS"},{"key":"10.1016\/j.meegid.2012.04.011_b0295","doi-asserted-by":"crossref","first-page":"1562","DOI":"10.1086\/656913","article-title":"Class I HLA-A\u22177401 is associated with protection from HIV-1 acquisition and disease progression in Mbeya","volume":"202","author":"Koehler","year":"2010","journal-title":"Tanzania J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0750","doi-asserted-by":"crossref","first-page":"2972","DOI":"10.1002\/art.10605","article-title":"Cell surface expression and immune receptor recognition of HLA-B27 homodimers","volume":"46","author":"Kollinberger","year":"2002","journal-title":"Arthritis Rheum."},{"key":"10.1016\/j.meegid.2012.04.011_b0300","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1038\/nature09914","article-title":"Differential microRNA regulation of HLA-C expression and its association with HIV control","volume":"472","author":"Kulkarni","year":"2011","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0305","doi-asserted-by":"crossref","first-page":"10826","DOI":"10.1128\/JVI.00804-11","article-title":"Human leukocyte antigen genotype and risk of HIV disease progression before and after initiation of antiretroviral therapy","volume":"85","author":"Kuniholm","year":"2011","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0310","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1146\/annurev.immunol.23.021704.115526","article-title":"NK cell recognition","volume":"23","author":"Lanier","year":"2005","journal-title":"Annu. Rev. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0315","doi-asserted-by":"crossref","first-page":"6056","DOI":"10.1128\/JVI.02119-05","article-title":"Human leukocyte antigen B58 supertype and human immunodeficiency virus type 1 infection in native Africans","volume":"80","author":"Lazaryan","year":"2006","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0320","doi-asserted-by":"crossref","first-page":"2610","DOI":"10.1128\/JVI.01962-09","article-title":"Human leukocyte antigen class I supertypes and HIV-1 control in African Americans","volume":"84","author":"Lazaryan","year":"2010","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0325","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1016\/j.humimm.2011.01.003","article-title":"The influence of human leukocyte antigen class I alleles and their population frequencies on human immunodeficiency virus type 1 control among African Americans","volume":"72","author":"Lazaryan","year":"2011","journal-title":"Hum. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0330","doi-asserted-by":"crossref","first-page":"282","DOI":"10.1038\/nm992","article-title":"HIV evolution: CTL escape mutation and reversion after transmission","volume":"10","author":"Leslie","year":"2004","journal-title":"Nat. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0335","doi-asserted-by":"crossref","first-page":"9879","DOI":"10.1128\/JVI.00320-10","article-title":"Additive contribution of HLA class I alleles in the immune control of HIV-1 infection","volume":"84","author":"Leslie","year":"2010","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0340","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1097\/01.qai.0000248355.40877.2a","article-title":"Human leukocyte antignen class I and II allele frequencies in a Chinese cohort","volume":"44","author":"Li","year":"2007","journal-title":"J. Acquir. Immune Defic. Syndr."},{"key":"10.1016\/j.meegid.2012.04.011_b0700","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1086\/596067","article-title":"Genomic association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS genomewide association study 02)","volume":"199","author":"Limou","year":"2009","journal-title":"J. Inf. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0760","doi-asserted-by":"crossref","first-page":"1404","DOI":"10.1086\/374394","article-title":"Association of polymorphisms in human leukocyte antigen class I and transporter associated with antigen processing genes with resistance to human immunodeficiency virus type 1 infection","volume":"187","author":"Liu","year":"2003","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0350","doi-asserted-by":"crossref","first-page":"797","DOI":"10.1007\/s00251-004-0647-4","article-title":"Definition of supertypes for HLA molecules using clustering of specificity matrices","volume":"55","author":"Lund","year":"2004","journal-title":"Immunogenetics"},{"key":"10.1016\/j.meegid.2012.04.011_b0355","doi-asserted-by":"crossref","first-page":"1581","DOI":"10.1086\/315472","article-title":"Influence of HLA supertypes on susceptibility and resistance to human immunodeficiency virus type 1 infection","volume":"181","author":"MacDonald","year":"2000","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0360","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1086\/318092","article-title":"The HLA A2\/6802 supertype is associated with reduced risk of perinatal HIV-1 transmission","volume":"183","author":"MacDonald","year":"2001","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0365","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1111\/j.1399-0039.2010.01466.x","article-title":"Nomenclature for factors of the HLA system","volume":"75","author":"Marsh","year":"2010","journal-title":"Tissue Antigens"},{"key":"10.1016\/j.meegid.2012.04.011_b0370","first-page":"49","article-title":"KIR locus polymorphisms: genotyping and disease association analysis","volume":"415","author":"Martin","year":"2008","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.meegid.2012.04.011_b0375","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1038\/ng934","article-title":"Epistatic interaction between KIR3DS1 and HLA-B delays the progression to AIDS","volume":"31","author":"Martin","year":"2002","journal-title":"Nat. Genet."},{"key":"10.1016\/j.meegid.2012.04.011_b0380","doi-asserted-by":"crossref","first-page":"733","DOI":"10.1038\/ng2035","article-title":"Innate partnership of HLA-B and KIR3DL1 subtypes against HIV-1","volume":"39","author":"Martin","year":"2007","journal-title":"Nat. Genet."},{"key":"10.1016\/j.meegid.2012.04.011_b0385","doi-asserted-by":"crossref","first-page":"4605","DOI":"10.1128\/JVI.02017-08","article-title":"HLA footprints on human immunodeficiency virus type 1 are associated with interclade polymorphisms and intraclade phylogenetic clustering","volume":"83","author":"Matthews","year":"2009","journal-title":"J. Virol."},{"key":"10.1016\/j.meegid.2012.04.011_b0390","doi-asserted-by":"crossref","first-page":"1894","DOI":"10.1016\/S0140-6736(08)61592-5","article-title":"HIV-1 vaccine-induced immunity in the test-of-concept Step Study: a case\u2013cohort analysis","volume":"372","author":"McElrath","year":"2008","journal-title":"Lancet"},{"key":"10.1016\/j.meegid.2012.04.011_b0395","doi-asserted-by":"crossref","first-page":"487","DOI":"10.1093\/infdis\/jiq075","article-title":"Impact of a functional KIR2DS4 allele on heterosexual HIV-1 transmission among discordant Zambian couples","volume":"203","author":"Merino","year":"2011","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0405","doi-asserted-by":"crossref","first-page":"1439","DOI":"10.1126\/science.1069660","article-title":"Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level","volume":"296","author":"Moore","year":"2002","journal-title":"Science"},{"key":"10.1016\/j.meegid.2012.04.011_b0415","doi-asserted-by":"crossref","first-page":"1318","DOI":"10.1097\/01.qai.0000127059.98621.55","article-title":"Frequent human leukocyte antigen class I alleles are associated with higher viral load among HIV type 1 seroconverters","volume":"37","author":"Nguyen","year":"2004","journal-title":"J. Acquir. Immune Defic. Syndr."},{"key":"10.1016\/j.meegid.2012.04.011_b0420","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1007\/s002510000281","article-title":"Distribution of natural killer cell immunoglobulin-like receptor sequences in three ethnic groups","volume":"52","author":"Norman","year":"2001","journal-title":"Immunogenetics"},{"key":"10.1016\/j.meegid.2012.04.011_b0425","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1007\/s00251-004-0674-1","article-title":"SNP haplotypes and allele frequencies show evidence for disruptive and balancing selection in the human leukocyte receptor complex","volume":"56","author":"Norman","year":"2004","journal-title":"Immunogenetics"},{"key":"10.1016\/j.meegid.2012.04.011_b0705","doi-asserted-by":"crossref","first-page":"1092","DOI":"10.1038\/ng2111","article-title":"Unusual selection on the KIR3DL1\/S1 natural killer receptor in Africans","volume":"39","author":"Norman","year":"2007","journal-title":"Nat. Genet."},{"key":"10.1016\/j.meegid.2012.04.011_b0435","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1101\/gr.085738.108","article-title":"Meiotic recombination generates rich diversity in NK receptor genes, alleles and haplotypes","volume":"19","author":"Norman","year":"2009","journal-title":"Genome Res."},{"key":"10.1016\/j.meegid.2012.04.011_b0410","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/S0952791502000043","article-title":"Using the world wide web for predicting CTL epitopes","volume":"15","author":"Nussbaum","year":"2003","journal-title":"Curr. Opin. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0440","doi-asserted-by":"crossref","first-page":"379","DOI":"10.1016\/S1471-4914(01)02131-1","article-title":"HLA and AIDS: a cautionary tale","volume":"7","author":"O\u2019Brien","year":"2001","journal-title":"Trends Mol. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0445","doi-asserted-by":"crossref","first-page":"6640","DOI":"10.4049\/jimmunol.171.12.6640","article-title":"The protein made from a common allele of KIR3DL1 (3DL1*004) is poorly expressed at cell surfaces due to substitution at positions 86 in Ig domain 0 and 182 in Ig domain 1","volume":"171","author":"Pando","year":"2003","journal-title":"J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0450","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1038\/44745","article-title":"Immunogenetics. Soaring costs in defence","volume":"401","author":"Parham","year":"1999","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0455","doi-asserted-by":"crossref","first-page":"951","DOI":"10.1084\/jem.20041783","article-title":"NK cells and trophoblasts: partners in pregnancy","volume":"200","author":"Parham","year":"2004","journal-title":"J. Exp. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0460","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1038\/nri1570","article-title":"MHC class I molecules and KIRS in human history, health and survival","volume":"9","author":"Parham","year":"2005","journal-title":"Nat. Rev. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0465","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1126\/science.272.5258.67","article-title":"Population biology of antigen presentation by MHC class I molecules","volume":"272","author":"Parham","year":"1996","journal-title":"Science"},{"key":"10.1016\/j.meegid.2012.04.011_b0470","doi-asserted-by":"crossref","first-page":"251","DOI":"10.1111\/j.1399-0039.2004.00270.x","article-title":"HLA class I serotypes and cytotoxic T-lymphocyte responses among human immunodeficiency virus-1-uninfected Thai volunteers immunized with ALVAC-HIV in combination with monomeric gp120 or oligomeric gp160 protein boosting","volume":"64","author":"Paris","year":"2004","journal-title":"Tissue Antigens"},{"key":"10.1016\/j.meegid.2012.04.011_b0475","doi-asserted-by":"crossref","first-page":"832","DOI":"10.1016\/j.vaccine.2011.11.002","article-title":"HLA class II restriction of HIV-1 clade-specific neutralising antibody responses in ethnic Thai recipients of the RV144 prime-boost vaccine combination of ALVAC-HIV and AIDSVAX\u00ae B\/E","volume":"30","author":"Paris","year":"2012","journal-title":"Vaccine"},{"key":"10.1016\/j.meegid.2012.04.011_b0480","doi-asserted-by":"crossref","first-page":"1625","DOI":"10.4049\/jimmunol.179.3.1625","article-title":"Detection of KIR3DS1 on the cell surface of peripheral blood NK cells facilitates identification of a novel null allele and assessment of KIR3DS1 expression during HIV-1 infection","volume":"179","author":"Pascal","year":"2007","journal-title":"J. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0485","doi-asserted-by":"crossref","first-page":"1141","DOI":"10.1086\/651382","article-title":"Host determinants of HIV-1 control in African Americans","volume":"201","author":"Pelak","year":"2009","journal-title":"J. Infect. Dis."},{"issue":"9","key":"10.1016\/j.meegid.2012.04.011_b0710","doi-asserted-by":"crossref","first-page":"e1001208","DOI":"10.1371\/journal.pbio.1001208","article-title":"Copy number variation of KIR genes influences HIV-1 control","volume":"11","author":"Pelak","year":"2011","journal-title":"PLoS"},{"key":"10.1016\/j.meegid.2012.04.011_b0715","doi-asserted-by":"crossref","first-page":"1661","DOI":"10.1086\/508748","article-title":"Randomized, double-blind, placebo-controlled efficacy trial of a bivalent recombinant glycoprotein 120 HIV-1 vaccine among injection drug users in Bangkok, Thailand","volume":"194","author":"Pitisuttithum","year":"2006","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.meegid.2012.04.011_b0505","doi-asserted-by":"crossref","first-page":"1022","DOI":"10.1016\/j.cub.2005.04.050","article-title":"Pathogen-driven selection of worldwide HLA class I diversity","volume":"15","author":"Prugnolle","year":"2005","journal-title":"Curr. Biol."},{"issue":"8","key":"10.1016\/j.meegid.2012.04.011_b0720","doi-asserted-by":"crossref","first-page":"e79","DOI":"10.1371\/journal.ppat.0020079","article-title":"KIR\/HLA pleiotropism: protection against both HIV and opportunistic infections","volume":"2","author":"Qi","year":"2006","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.meegid.2012.04.011_b0725","doi-asserted-by":"crossref","first-page":"2209","DOI":"10.1056\/NEJMoa0908492","article-title":"Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand","volume":"361","author":"Rerks-Ngarm","year":"2009","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0500","doi-asserted-by":"crossref","first-page":"D863","DOI":"10.1093\/nar\/gkp879","article-title":"IPD \u2013 the Immuno Polymorphism Database","volume":"38","author":"Robinson","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.meegid.2012.04.011_b0520","doi-asserted-by":"crossref","first-page":"324","DOI":"10.1097\/QAI.0b013e3181cf30ba","article-title":"Viral and host factors associated with the HIV-1 viral load setpoint in adults form Mbeya region","volume":"54","author":"Saathoff","year":"2010","journal-title":"Tanzania J. Acquir. Immune Defic. Syndr."},{"key":"10.1016\/j.meegid.2012.04.011_b0525","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1034\/j.1399-0039.2003.610102.x","article-title":"Population of the HLA ligand database","volume":"61","author":"Sathiamurthy","year":"2003","journal-title":"Tissue Antigens"},{"key":"10.1016\/j.meegid.2012.04.011_b0530","doi-asserted-by":"crossref","first-page":"830","DOI":"10.1007\/s00251-002-0530-0","article-title":"Class I molecules with similar peptide-binding specificities are the result of both common ancestry and convergent evolution","volume":"54","author":"Sette","year":"2003","journal-title":"Immunogenetics"},{"key":"10.1016\/j.meegid.2012.04.011_b0535","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2172-9-1","article-title":"HLA class I supertypes: a revised and updated classification","volume":"9","author":"Sidney","year":"2008","journal-title":"BMC Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0540","doi-asserted-by":"crossref","first-page":"719","DOI":"10.1089\/088922201750236997","article-title":"HIV-specific cytotoxic T lymphocytes, HLA-A11, and chemokine related factors may act synergistically to determine HIV resistance in CCR5 delta-32 negative female sex workers in Chiang Rai, northern Thailand","volume":"17","author":"Sriwanthana","year":"2001","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.meegid.2012.04.011_b0755","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/j.it.2004.11.001","article-title":"HIV-1 diversity versus HLA class I polymorphism","volume":"26","author":"Stephens","year":"2005","journal-title":"Trends Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0545","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1111\/j.0001-2815.2004.00221.x","article-title":"SARS CTL vaccine candidates; HLA supertype-, genome-wide scanning and biochemical validation","volume":"63","author":"Sylvester-Hvid","year":"2004","journal-title":"Tissue Antigens"},{"key":"10.1016\/j.meegid.2012.04.011_b0560","doi-asserted-by":"crossref","first-page":"317","DOI":"10.1089\/088922299311277","article-title":"HLA class I homozygosity accelerates disease progression in HIV-1 infection","volume":"15","author":"Tang","year":"1999","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.meegid.2012.04.011_b0565","doi-asserted-by":"crossref","first-page":"8276","DOI":"10.1128\/JVI.76.16.8276-8284.2002","article-title":"Favorable and unfavorable HLA class I alleles and haplotypes in Zambians predominantly infected with clade C human immunodeficiency virus type 1","volume":"76","author":"Tang","year":"2002","journal-title":"J. Virol."},{"issue":"3","key":"10.1016\/j.meegid.2012.04.011_b0570","doi-asserted-by":"crossref","first-page":"e9629","DOI":"10.1371\/journal.pone.0009629","article-title":"Human leukocyte antigens and HIV type 1 load in early and chronic infection: predominance of evolving relationships","volume":"5","author":"Tang","year":"2010","journal-title":"PLoS ONE"},{"key":"10.1016\/j.meegid.2012.04.011_b0730","doi-asserted-by":"crossref","first-page":"1551","DOI":"10.1126\/science.1195271","article-title":"The major genetic determinants of HIV-1 control affect HLA class I peptide presentation","volume":"330","year":"2010","journal-title":"Science"},{"key":"10.1016\/j.meegid.2012.04.011_b0735","doi-asserted-by":"crossref","first-page":"921","DOI":"10.1038\/44853","article-title":"Complete sequence and gene map of a human major histocompatibility complex","volume":"401","year":"1999","journal-title":"Nature"},{"key":"10.1016\/j.meegid.2012.04.011_b0575","doi-asserted-by":"crossref","first-page":"1290","DOI":"10.1038\/ng.486","article-title":"HLA-C cell surface expression and control of HIV\/AIDS correlate with a variant upstream of HLA-C","volume":"12","author":"Thomas","year":"2009","journal-title":"Nat. Genet."},{"key":"10.1016\/j.meegid.2012.04.011_b0580","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1016\/S0065-308X(06)64004-9","article-title":"Human genetic diversity and the epidemiology of parasitic diseases and other transmissible diseases","volume":"64","author":"Tibayrenc","year":"2007","journal-title":"Adv. Parasitol."},{"key":"10.1016\/j.meegid.2012.04.011_b0585","doi-asserted-by":"crossref","first-page":"928","DOI":"10.1038\/nm893","article-title":"Advantage of a rare HLA supertype in HIV disease progression","volume":"9","author":"Trachtenberg","year":"2003","journal-title":"Nat. Med."},{"key":"10.1016\/j.meegid.2012.04.011_b0590","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/S0065-2776(08)60664-1","article-title":"Biology of natural killer cells","volume":"47","author":"Trinchieri","year":"1989","journal-title":"Adv. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0595","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1038\/85246","article-title":"Multifaceted roles of MHC class I and MHC class I-like molecules in T cell activation","volume":"2","author":"Ugloni","year":"2001","journal-title":"Nat. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0600","doi-asserted-by":"crossref","first-page":"753","DOI":"10.1016\/S1074-7613(00)80394-5","article-title":"Human diversity in killer cell inhibitory receptor genes","volume":"7","author":"Uhberg","year":"1997","journal-title":"Immunity"},{"key":"10.1016\/j.meegid.2012.04.011_b0610","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1097\/QAD.0b013e32831db247","article-title":"Association of HLA-C and HCP5 gene regions with the clinical course of HIV-1 infection","volume":"23","author":"Van Manen","year":"2009","journal-title":"AIDS"},{"key":"10.1016\/j.meegid.2012.04.011_b0615","doi-asserted-by":"crossref","first-page":"503","DOI":"10.1038\/ni1582","article-title":"Functions of natural killer cells","volume":"9","author":"Vivier","year":"2008","journal-title":"Nat. Immunol."},{"key":"10.1016\/j.meegid.2012.04.011_b0620","doi-asserted-by":"crossref","first-page":"459","DOI":"10.1089\/aid.2009.0176","article-title":"Alterations in natural killer cell receptor profiles during HIV type 1 disease progression among chronically infected South African adults","volume":"26","author":"Wong","year":"2010","journal-title":"AIDS Res. Hum. Retroviruses"},{"key":"10.1016\/j.meegid.2012.04.011_b0740","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1097\/QAD.0b013e32833202f5","article-title":"A polymorphism in the HCP5 gene associated with HLA-B*5701 does not restrict HIV-1 in vitro","volume":"24","author":"Yoon","year":"2010","journal-title":"AIDS"},{"key":"10.1016\/j.meegid.2012.04.011_b0625","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/S0167-5699(97)80008-4","article-title":"The discovery of MHC restriction","volume":"18","author":"Zinkernagel","year":"1997","journal-title":"Immunol. Today"}],"container-title":["Infection, Genetics and Evolution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134812001438?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134812001438?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2023,6,22]],"date-time":"2023-06-22T10:44:05Z","timestamp":1687430645000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1567134812001438"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2012,10]]},"references-count":128,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2012,10]]}},"alternative-id":["S1567134812001438"],"URL":"https:\/\/doi.org\/10.1016\/j.meegid.2012.04.011","relation":{},"ISSN":["1567-1348"],"issn-type":[{"value":"1567-1348","type":"print"}],"subject":[],"published":{"date-parts":[[2012,10]]}}}