{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,20]],"date-time":"2026-10-20T03:20:23Z","timestamp":1792466423409,"version":"4.5.0"},"reference-count":58,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2014,3,1]],"date-time":"2014-03-01T00:00:00Z","timestamp":1393632000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Infection, Genetics and Evolution"],"published-print":{"date-parts":[[2014,3]]},"DOI":"10.1016\/j.meegid.2013.12.017","type":"journal-article","created":{"date-parts":[[2014,1,18]],"date-time":"2014-01-18T16:01:10Z","timestamp":1390060870000},"page":"67-71","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":28,"special_numbering":"C","title":["Isolation of Coxiella burnetii from bovines with history of reproductive disorders in India and phylogenetic inference based on the partial sequencing of IS1111 element"],"prefix":"10.1016","volume":"22","author":[{"given":"Durga Prasad","family":"Das","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.V.S.","family":"Malik","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"D.B.","family":"Rawool","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Samir","family":"Das","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Shabu","family":"Shoukat","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ravi Kumar","family":"Gandham","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sonal","family":"Saxena","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"R.","family":"Singh","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Swapnil P.","family":"Doijad","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"S.B.","family":"Barbuddhe","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.meegid.2013.12.017_b0010","series-title":"Zoonoses and Communicable Diseases Common to Man","first-page":"16","year":"2003"},{"key":"10.1016\/j.meegid.2013.12.017_b0015","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/1751-0147-55-13","article-title":"Coxiella burnetii associated reproductive disorders in domestic animals-a critical review","volume":"55","author":"Agerholm","year":"2013","journal-title":"Acta Vet. Scand."},{"key":"10.1016\/j.meegid.2013.12.017_b0020","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.meegid.2013.12.017_b0025","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1016\/j.vetmic.2009.07.016","article-title":"Q fever","volume":"140","author":"Angelakis","year":"2010","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0030","series-title":"Backgrounder: Q Fever (Biosecurity Updates From The AVMA)","first-page":"5","author":"AVMA","year":"2009"},{"key":"10.1016\/j.meegid.2013.12.017_b0035","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1016\/S0378-1135(99)00178-9","article-title":"The detection of Coxiella burnetii from ovine genital swabs, milk and fecal samples by the use of a single touchdown polymerase chain reaction","volume":"72","author":"Berri","year":"2000","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0040","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1136\/vr.148.16.502","article-title":"Relationship between the shedding of Coxiella burnetii, clinical signs and serological responses of 34 sheep","volume":"48","author":"Berri","year":"2001","journal-title":"Vet. Rec."},{"key":"10.1016\/j.meegid.2013.12.017_b0005","unstructured":"Centers for Disease Control and Prevention (CDC), 2011. Emergency preparedness and response: bioterrorism agents\/diseases. Available at <http:\/\/www.bt.cdc.gov\/agent\/agentlist-category.asp>. Accessed October 6."},{"key":"10.1016\/j.meegid.2013.12.017_b0045","doi-asserted-by":"crossref","first-page":"4453","DOI":"10.1128\/JB.00124-06","article-title":"Complete genome sequence of Yersinia pestis strains Antiqua and Nepal516: evidence of gene reduction in an emerging pathogen","volume":"188","author":"Chain","year":"2006","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.meegid.2013.12.017_b0050","series-title":"Mobile DNA II","first-page":"305","article-title":"Insertion sequences revisited","author":"Chandler","year":"2002"},{"issue":"2","key":"10.1016\/j.meegid.2013.12.017_b0055","doi-asserted-by":"crossref","first-page":"81","DOI":"10.33073\/pjm-2012-011","article-title":"Q fever at the turn of the century","volume":"61","author":"Chmielewski","year":"2012","journal-title":"Pol. J. Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0060","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.vetmic.2010.10.007","article-title":"Prevalence of Coxiella burnetii infection in domestic ruminants: a critical review","volume":"149","author":"Guatteo","year":"2011","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0065","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1111\/j.1749-6632.1990.tb42203.x","article-title":"The role of lipopolysaccharides in the virulence of Coxiella burnetii","volume":"590","author":"Hackstadt","year":"1990","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"10.1016\/j.meegid.2013.12.017_b0070","doi-asserted-by":"crossref","first-page":"504","DOI":"10.1111\/j.1749-6632.1990.tb42260.x","article-title":"Use of pulsed field gel electrophoresis to differentiate Coxiella burnetii strains","volume":"590","author":"Heinzen","year":"1990","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"10.1016\/j.meegid.2013.12.017_b0075","doi-asserted-by":"crossref","first-page":"199","DOI":"10.1016\/j.gene.2006.01.005","article-title":"Spontaneous recombination between homologous prophage regions causes large scale inversions within the Escherichia coli O157:H7 chromosome","volume":"372","author":"Iguchi","year":"2006","journal-title":"Gene"},{"key":"10.1016\/j.meegid.2013.12.017_b0080","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1017\/S0950268897008510","article-title":"Molecular characterization of Coxiella burnetii isolates","volume":"120","author":"J\u00e4ger","year":"1998","journal-title":"Epidemiol. Infect."},{"key":"10.1016\/j.meegid.2013.12.017_b0085","doi-asserted-by":"crossref","first-page":"4432","DOI":"10.1093\/nar\/gkf566","article-title":"Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157","volume":"30","author":"Jin","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.meegid.2013.12.017_b0090","doi-asserted-by":"crossref","first-page":"619","DOI":"10.3201\/eid1104.041036","article-title":"Coxiella burnetii in bulk tank milk samples United States","volume":"11","author":"Kim","year":"2005","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2013.12.017_b0095","doi-asserted-by":"crossref","first-page":"1186","DOI":"10.1186\/1471-2180-6-2","article-title":"Highly sensitive real-time PCR for specific detection and quantification of Coxiella burnetii","volume":"6","author":"Klee","year":"2006","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0100","doi-asserted-by":"crossref","first-page":"2638","DOI":"10.1128\/JB.187.8.2638-2650.2005","article-title":"Diversity of genome structure in Salmonella enterica serovar Typhi populations","volume":"187","author":"Kothapalli","year":"2005","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.meegid.2013.12.017_b0105","series-title":"Q Fever Vol I The Disease","first-page":"23","article-title":"Coxiellosis (Q fever) in animals","author":"Lang","year":"1990"},{"key":"10.1016\/j.meegid.2013.12.017_b0110","doi-asserted-by":"crossref","first-page":"4234","DOI":"10.1128\/AEM.64.11.4234-4237.1998","article-title":"PCR detection of Coxiella burnetii from different clinical specimens, especially bovine milk on the basis of DNA preparation with silica matrix","volume":"64","author":"Lorenz","year":"1998","journal-title":"Appl. Environ. Microbiol."},{"issue":"7","key":"10.1016\/j.meegid.2013.12.017_b0115","doi-asserted-by":"crossref","first-page":"1102","DOI":"10.3201\/eid1907.130044","article-title":"Unique clone of Coxiella burnetii causing severe Q fever","volume":"19","author":"Mahamat","year":"2013","journal-title":"French Guiana. Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2013.12.017_b0120","unstructured":"Malik, S.V.S., Das, D.P., Barbuddhe, S.B., Shrivastava, S., Singh, R., Saxena, S., Doijad, S.P., Das, S., 2010a. Coxiella burnetii clone y1 insertion sequence IS1111, Partial sequence. <http:\/\/www.ncbi.nlm.nih.gov>. Accession Number: HM222935."},{"key":"10.1016\/j.meegid.2013.12.017_b0125","unstructured":"Malik, S.V.S., Das, D.P., Barbuddhe, S.B., Shrivastava, S., Singh, R., Saxena, S., Doijad, S.P., Das, S., 2010b. Coxiella burnetii clone y3 insertion sequence IS1111, Partial sequence. <http:\/\/www.ncbi.nlm.nih.gov>. Accession Number: HM222936."},{"key":"10.1016\/j.meegid.2013.12.017_b0130","unstructured":"Malik, S.V.S., Das, D.P., Barbuddhe, S.B., Shrivastava, S., Singh, R., Saxena, S., Doijad, S.P., Das, S., 2010c. Coxiella burnetii clone y7 insertion sequence IS1111, Partial sequence. <http:\/\/www.ncbi.nlm.nih.gov>. Accession Number: HM222937."},{"key":"10.1016\/j.meegid.2013.12.017_b0135","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1183\/09031936.03.00099703","article-title":"Coxiella burnetii pneumonia","volume":"21","author":"Marrie","year":"2003","journal-title":"Eur. Respir. J."},{"key":"10.1016\/j.meegid.2013.12.017_b0140","doi-asserted-by":"crossref","first-page":"518","DOI":"10.1128\/CMR.12.4.518","article-title":"Q fever","volume":"12","author":"Maurin","year":"1999","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.meegid.2013.12.017_b0145","doi-asserted-by":"crossref","first-page":"584","DOI":"10.1016\/0140-6736(91)91161-M","article-title":"Infection of aortic aneurysm with Coxiella burnetii","volume":"338","author":"Micoud","year":"1991","journal-title":"Lancet"},{"key":"10.1016\/j.meegid.2013.12.017_b0150","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1016\/0378-1119(91)90401-V","article-title":"Analysis of the cbhE\u2019 plasmid gene from acute disease causing isolates of Coxiella burnetii","volume":"103","author":"Minnick","year":"1991","journal-title":"Gene"},{"key":"10.1016\/j.meegid.2013.12.017_b0155","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1093\/dnares\/dsn013","article-title":"Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis","volume":"15","author":"Naito","year":"2008","journal-title":"DNA Res."},{"key":"10.1016\/j.meegid.2013.12.017_b0160","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1016\/j.cimid.2012.03.002","article-title":"Old and new diagnostic approaches for Q fever diagnosis: correlation among serological (CFT, ELISA) and molecular analyses","volume":"35","author":"Natale","year":"2012","journal-title":"Comp. Immunol. Microbiol. Infect. Dis."},{"key":"10.1016\/j.meegid.2013.12.017_b0165","first-page":"173","article-title":"Molecular characterization of cloned variants of Coxiella burnetii isolated in China","volume":"35","author":"Ning","year":"1991","journal-title":"Acta Virol."},{"key":"10.1016\/j.meegid.2013.12.017_b0170","doi-asserted-by":"crossref","first-page":"417","DOI":"10.1016\/S1286-4579(00)00325-7","article-title":"Q fever epidemiology and pathogenesis","volume":"2","author":"Norlander","year":"2000","journal-title":"Microbes Infect."},{"key":"10.1016\/j.meegid.2013.12.017_b0175","doi-asserted-by":"crossref","first-page":"32","DOI":"10.1038\/ng1227","article-title":"Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica","volume":"35","author":"Parkhill","year":"2003","journal-title":"Nat. Genet."},{"key":"10.1016\/j.meegid.2013.12.017_b0180","first-page":"112","article-title":"Isolation of Coxiella burnetii from human sources","volume":"13","author":"Prasad","year":"1986","journal-title":"Int. J. Zoonoses"},{"key":"10.1016\/j.meegid.2013.12.017_b0185","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1111\/j.1749-6632.1990.tb42206.x","article-title":"Chronic Q fever: diagnosis and follow up","volume":"590","author":"Raoult","year":"1990","journal-title":"Ann. N. Y. Acad. Sci."},{"key":"10.1016\/j.meegid.2013.12.017_b0190","doi-asserted-by":"crossref","first-page":"2482","DOI":"10.1128\/JCM.28.11.2482-2484.1990","article-title":"Isolation of 16 strains of Coxiella burnetii from patients by using a sensitive centrifugation cell culture system and establishment of strains in HEL cells","volume":"28","author":"Raoult","year":"1990","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0195","doi-asserted-by":"crossref","first-page":"R102","DOI":"10.1186\/gb-2007-8-6-r102","article-title":"Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains","volume":"8","author":"Rohmer","year":"2007","journal-title":"Genome Biol."},{"key":"10.1016\/j.meegid.2013.12.017_b0200","doi-asserted-by":"crossref","first-page":"615","DOI":"10.1093\/qjmed\/hci099","article-title":"Molecular detection of Coxiella burnetii in blood and sera during Q fever","volume":"98","author":"Rolain","year":"2005","journal-title":"Q. J. Med."},{"key":"10.1016\/j.meegid.2013.12.017_b0205","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1186\/1471-2164-9-204","article-title":"Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A","volume":"9","author":"Salzberg","year":"2008","journal-title":"BMC Genomics"},{"key":"10.1016\/j.meegid.2013.12.017_b0210","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1111\/j.1574-6968.1999.tb08778.x","article-title":"Intraspecies diversity of Coxiella burnetii as revealed by com1 and mucZ sequence comparison","volume":"180","author":"Sekeyova","year":"1999","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.meegid.2013.12.017_b0215","doi-asserted-by":"crossref","first-page":"2462","DOI":"10.1128\/JCM.30.9.2462-2466.1992","article-title":"Detection of Coxiella burnetii by DNA amplification using polymerase chain reaction","volume":"30","author":"Stein","year":"1992","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0220","doi-asserted-by":"crossref","first-page":"5237","DOI":"10.1093\/nar\/20.19.5237","article-title":"Rapid detection of Coxiella burnetii in paraffin-embedded tissues using Chelex R 100 and PCR","volume":"20","author":"Stein","year":"1992","journal-title":"Nucl. Acid Res."},{"key":"10.1016\/j.meegid.2013.12.017_b0225","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1006\/mpat.1993.1068","article-title":"Lack of pathotype specific gene in human Coxiella burnetii isolates","volume":"15","author":"Stein","year":"1993","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.meegid.2013.12.017_b0230","series-title":"Diagnostic Procedures in Veterinary Bacteriology and Mycology","first-page":"569","article-title":"Laboratory methods for rickettsiae and chlamydiae","author":"Storz","year":"1990"},{"key":"10.1016\/j.meegid.2013.12.017_b0235","series-title":"Diagnostic Procedures in Veterinary Bacteriology and Mycology","first-page":"309","article-title":"Rickettsiae and chlamydiae","author":"Storz","year":"1991"},{"key":"10.1016\/j.meegid.2013.12.017_b0240","unstructured":"Struble, K., 2012. Q Fever. Medscape Reference. Updated: Jan 25."},{"key":"10.1016\/j.meegid.2013.12.017_b0245","doi-asserted-by":"crossref","first-page":"2731","DOI":"10.1093\/molbev\/msr121","article-title":"MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods","volume":"28","author":"Tamura","year":"2011","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"10.1016\/j.meegid.2013.12.017_b0250","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1093\/oxfordjournals.aje.a009920","article-title":"Hyperendemic focus of Q fever related to sheep and wind","volume":"150","author":"Tissot-Dupont","year":"1999","journal-title":"Am. J. Epidemiol."},{"key":"10.1016\/j.meegid.2013.12.017_b0255","doi-asserted-by":"crossref","first-page":"1264","DOI":"10.3201\/eid1007.030724","article-title":"Wind in November, Q fever in December","volume":"10","author":"Tissot-Dupont","year":"2004","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2013.12.017_b0260","doi-asserted-by":"crossref","first-page":"663","DOI":"10.1111\/j.1348-0421.1995.tb03254.x","article-title":"Isolation of Coxiella burnetii from dairy cattle and ticks, and some characteristics of the isolates in Japan","volume":"39","author":"To","year":"1995","journal-title":"Microbiol. Immunol."},{"issue":"6","key":"10.1016\/j.meegid.2013.12.017_b0265","doi-asserted-by":"crossref","first-page":"2038","DOI":"10.1128\/JCM.01874-07","article-title":"Comparison of PCR, immunofluorescence assay, and pathogen isolation for diagnosis of Q fever in humans with spontaneous abortions","volume":"46","author":"Vaidya","year":"2008","journal-title":"J. Clin. Microbiol."},{"issue":"4","key":"10.1016\/j.meegid.2013.12.017_b0270","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1016\/j.cimid.2008.10.006","article-title":"Prevalence of Q fever in domestic animals with reproductive disorders","volume":"33","author":"Vaidya","year":"2010","journal-title":"Comp. Immunol. Microbiol. Infect. Dis."},{"key":"10.1016\/j.meegid.2013.12.017_b0275","doi-asserted-by":"crossref","first-page":"2775","DOI":"10.1128\/IAI.71.5.2775-2786.2003","article-title":"Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T","volume":"71","author":"Wei","year":"2003","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2013.12.017_b0280","doi-asserted-by":"crossref","first-page":"580","DOI":"10.1111\/j.1439-0450.1994.tb00267.x","article-title":"Detection of Coxiella burnetii in cow\u2019s milk using the polymerase chain reaction","volume":"41","author":"Willems","year":"1994","journal-title":"J. Vet. Med. B"},{"key":"10.1016\/j.meegid.2013.12.017_b0285","doi-asserted-by":"crossref","first-page":"6445","DOI":"10.1093\/nar\/gki954","article-title":"Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery","volume":"33","author":"Yang","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.meegid.2013.12.017_b0290","doi-asserted-by":"crossref","first-page":"871","DOI":"10.1111\/j.1348-0421.1997.tb01943.x","article-title":"Differentiation of Coxiella burnetii by sequence analysis of the gene (com1) encoding a 27-kDa outer membrane protein","volume":"41","author":"Zhang","year":"1997","journal-title":"Microbiol. Immunol."}],"container-title":["Infection, Genetics and Evolution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134813004607?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134813004607?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2020,8,14]],"date-time":"2020-08-14T09:37:58Z","timestamp":1597397878000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1567134813004607"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,3]]},"references-count":58,"alternative-id":["S1567134813004607"],"URL":"https:\/\/doi.org\/10.1016\/j.meegid.2013.12.017","relation":{},"ISSN":["1567-1348"],"issn-type":[{"value":"1567-1348","type":"print"}],"subject":[],"published":{"date-parts":[[2014,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Isolation of Coxiella burnetii from bovines with history of reproductive disorders in India and phylogenetic inference based on the partial sequencing of IS1111 element","name":"articletitle","label":"Article Title"},{"value":"Infection, Genetics and Evolution","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.meegid.2013.12.017","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2014 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}]}}