{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T15:07:12Z","timestamp":1761577632612,"version":"build-2065373602"},"reference-count":45,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2018,11,1]],"date-time":"2018-11-01T00:00:00Z","timestamp":1541030400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2018,11,1]],"date-time":"2018-11-01T00:00:00Z","timestamp":1541030400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"funder":[{"DOI":"10.13039\/100000060","name":"National Institute of Allergy and Infectious Diseases","doi-asserted-by":"publisher","award":["R01 AI024656-23"],"award-info":[{"award-number":["R01 AI024656-23"]}],"id":[{"id":"10.13039\/100000060","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Infection, Genetics and Evolution"],"published-print":{"date-parts":[[2018,11]]},"DOI":"10.1016\/j.meegid.2018.07.038","type":"journal-article","created":{"date-parts":[[2018,7,31]],"date-time":"2018-07-31T02:52:19Z","timestamp":1533005539000},"page":"321-328","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":14,"special_numbering":"C","title":["Distribution and characterization of Shiga toxin converting temperate phages carried by Shigella flexneri in Hispaniola"],"prefix":"10.1016","volume":"65","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0218-5884","authenticated-orcid":false,"given":"Marta","family":"Fogolari","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Carla","family":"Mavian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Silvia","family":"Angeletti","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marco","family":"Salemi","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Keith A.","family":"Lampel","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4788-6166","authenticated-orcid":false,"given":"Anthony T.","family":"Maurelli","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.meegid.2018.07.038_bb0005","doi-asserted-by":"crossref","first-page":"W16","DOI":"10.1093\/nar\/gkw387","article-title":"PHASTER: a better, faster version of the PHAST phage search tool","volume":"44","author":"Arndt","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.meegid.2018.07.038_bb0010","doi-asserted-by":"crossref","first-page":"995","DOI":"10.1139\/cjm-2015-0538","article-title":"Identification of Shigella flexneri isolates carrying the Shiga toxin 1-producing gene in Quebec, Canada, linked to travel to Haiti","volume":"61","author":"Bekal","year":"2015","journal-title":"Can. J. Microbiol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0015","doi-asserted-by":"crossref","first-page":"1498","DOI":"10.1016\/S0140-6736(99)00961-7","article-title":"Isolation of Shigella sonnei lysogenic for a bacteriophage encoding gene for production of Shiga toxin","volume":"353","author":"Beutin","year":"1999","journal-title":"Lancet"},{"key":"10.1016\/j.meegid.2018.07.038_bb0020","doi-asserted-by":"crossref","first-page":"2665","DOI":"10.1534\/genetics.105.048975","article-title":"A simple and robust statistical test for detecting the presence of recombination","volume":"172","author":"Bruen","year":"2006","journal-title":"Genetics"},{"key":"10.1016\/j.meegid.2018.07.038_bb0025","doi-asserted-by":"crossref","first-page":"255","DOI":"10.1093\/molbev\/msh018","article-title":"Neighbor-net: an agglomerative method for the construction of phylogenetic networks","volume":"21","author":"Bryant","year":"2004","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0030","doi-asserted-by":"crossref","first-page":"395","DOI":"10.1016\/j.trstmh.2012.04.001","article-title":"Haemolytic uraemic syndrome during shigellosis","volume":"106","author":"Butler","year":"2012","journal-title":"Trans. R. Soc. Trop. Med. Hyg."},{"key":"10.1016\/j.meegid.2018.07.038_bb0035","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gku1196","article-title":"Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins","volume":"43","author":"Croucher","year":"2015","journal-title":"Nucleic Acids Res."},{"year":"2018","series-title":"Principles of Population Genetics","author":"Daniel","key":"10.1016\/j.meegid.2018.07.038_bb0040"},{"key":"10.1016\/j.meegid.2018.07.038_bb0045","doi-asserted-by":"crossref","first-page":"e11147","DOI":"10.1371\/journal.pone.0011147","article-title":"progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement","volume":"5","author":"Darling","year":"2010","journal-title":"PLoS ONE"},{"key":"10.1016\/j.meegid.2018.07.038_bb0050","doi-asserted-by":"crossref","first-page":"1669","DOI":"10.3201\/eid2010.140292","article-title":"Clinical isolates of Shiga toxin 1a-producing Shigella flexneri with an epidemiological link to recent travel to Hispaniola","volume":"20","author":"Gray","year":"2014","journal-title":"Emerg. Infect. Dis."},{"key":"10.1016\/j.meegid.2018.07.038_bb0055","doi-asserted-by":"crossref","DOI":"10.1016\/j.cmi.2015.05.006","article-title":"Prevalence of Shiga toxin-producing Shigella species isolated from French travelers returning from the Caribbean: an emerging pathogen with international implications","volume":"21","author":"Gray","year":"2015","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.meegid.2018.07.038_bb0060","doi-asserted-by":"crossref","first-page":"ofv134","DOI":"10.1093\/ofid\/ofv134","article-title":"Stx-producing Shigella species from patients in Haiti: an emerging pathogen with the potential for global spread","volume":"2","author":"Gray","year":"2015","journal-title":"Open Forum Infect. Dis."},{"key":"10.1016\/j.meegid.2018.07.038_bb0065","doi-asserted-by":"crossref","first-page":"1163","DOI":"10.4269\/ajtmh.2007.76.1163","article-title":"Emergence of Shiga toxin 1 genes within Shigella dysenteriae type 4 isolates from travelers returning from the Island of Hispanola","volume":"76","author":"Gupta","year":"2007","journal-title":"Am. J. Trop. Med. Hyg."},{"key":"10.1016\/j.meegid.2018.07.038_bb0070","doi-asserted-by":"crossref","first-page":"2011","DOI":"10.1093\/genetics\/155.4.2011","article-title":"A new statistic for detecting genetic differentiation","volume":"155","author":"Hudson","year":"2000","journal-title":"Genetics"},{"key":"10.1016\/j.meegid.2018.07.038_bb0075","first-page":"138","article-title":"A statistical test for detecting geographic subdivision","volume":"9","author":"Hudson","year":"1992","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0080","doi-asserted-by":"crossref","first-page":"583","DOI":"10.1093\/genetics\/132.2.583","article-title":"Estimation of levels of gene flow from DNA sequence data","volume":"132","author":"Hudson","year":"1992","journal-title":"Genetics"},{"key":"10.1016\/j.meegid.2018.07.038_bb0085","doi-asserted-by":"crossref","first-page":"103","DOI":"10.1109\/TCBB.2008.58","article-title":"Drawing rooted phylogenetic networks","volume":"6","author":"Huson","year":"2009","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform."},{"key":"10.1016\/j.meegid.2018.07.038_bb0090","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1093\/molbev\/msj030","article-title":"Application of phylogenetic networks in evolutionary studies","volume":"23","author":"Huson","year":"2006","journal-title":"Mol. Biol. Evol."},{"author":"Jeremy","key":"10.1016\/j.meegid.2018.07.038_bb0095"},{"key":"10.1016\/j.meegid.2018.07.038_bb0100","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.EHEC-0028-2014","article-title":"Overview and Historical Perspectives","volume":"2","author":"Kaper","year":"2014","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.meegid.2018.07.038_bb0105","doi-asserted-by":"crossref","first-page":"3096","DOI":"10.1093\/bioinformatics\/btl474","article-title":"GARD: a genetic algorithm for recombination detection","volume":"22","author":"Kosakovsky Pond","year":"2006","journal-title":"Bioinformatics"},{"key":"10.1016\/j.meegid.2018.07.038_bb0110","doi-asserted-by":"crossref","DOI":"10.1128\/mSphere.00344-16","article-title":"Recent outbreaks of Shigellosis in California caused by two distinct populations of Shigella sonnei with either increased virulence or fluoroquinolone resistance","volume":"1","author":"Kozyreva","year":"2016","journal-title":"mSphere"},{"key":"10.1016\/j.meegid.2018.07.038_bb0115","doi-asserted-by":"crossref","first-page":"1870","DOI":"10.1093\/molbev\/msw054","article-title":"MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets","volume":"33","author":"Kumar","year":"2016","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0120","doi-asserted-by":"crossref","first-page":"1147","DOI":"10.1093\/molbev\/msy027","article-title":"Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades","volume":"35","author":"Kupczok","year":"2018","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0125","article-title":"Complete genome sequences of two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25","volume":"3","author":"Lindsey","year":"2015","journal-title":"Gen. Announc."},{"key":"10.1016\/j.meegid.2018.07.038_bb0130","unstructured":"Mandell, G. L., Bennett, J. E., & Dolin, R. Mandell, Douglas, and Bennett's principles and practice of infectious diseases. 7th ed. (Churchill Livingstone\/Elsevier, 2010)."},{"key":"10.1016\/j.meegid.2018.07.038_bb0135","doi-asserted-by":"crossref","first-page":"1058","DOI":"10.1046\/j.1365-2958.1999.01669.x","article-title":"Spontaneous tandem amplification and deletion of the shiga toxin operon in Shigella dysenteriae 1","volume":"34","author":"McDonough","year":"1999","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0140","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.EHEC-0024-2013","article-title":"Shiga Toxin (Stx) classification, structure, and function","volume":"2","author":"Melton-Celsa","year":"2014","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.meegid.2018.07.038_bb0145","doi-asserted-by":"crossref","first-page":"1188","DOI":"10.1093\/molbev\/mst024","article-title":"Ultrafast approximation for phylogenetic bootstrap","volume":"30","author":"Minh","year":"2013","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0150","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1128\/9781555816728.ch35","article-title":"Escherichia, Shigella, and Salmonella","author":"Nataro","year":"2011","journal-title":"Manual Clin. Microb."},{"key":"10.1016\/j.meegid.2018.07.038_bb0155","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1093\/molbev\/msu300","article-title":"IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies","volume":"32","author":"Nguyen","year":"2015","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0160","doi-asserted-by":"crossref","first-page":"1545","DOI":"10.1099\/jmm.0.058917-0","article-title":"Antimicrobial resistance and genetic characteristics of integron-carrier shigellae isolated in Hungary (1998-2008)","volume":"62","author":"Nogrady","year":"2013","journal-title":"J. Med. Microbiol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0165","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1093\/bioinformatics\/bti079","article-title":"HyPhy: hypothesis testing using phylogenies","volume":"21","author":"Pond","year":"2005","journal-title":"Bioinformatics"},{"key":"10.1016\/j.meegid.2018.07.038_bb0170","doi-asserted-by":"crossref","first-page":"10567","DOI":"10.1073\/pnas.180094797","article-title":"Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics","volume":"97","author":"Pupo","year":"2000","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.meegid.2018.07.038_bb0175","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1145\/505241.505243","article-title":"An Optimal minimum spanning tree algorithm","volume":"49","author":"Ramachandran","year":"2002","journal-title":"J. Assoc. Comput. Mach."},{"key":"10.1016\/j.meegid.2018.07.038_bb0180","doi-asserted-by":"crossref","first-page":"687","DOI":"10.1016\/S0923-2508(01)01249-9","article-title":"Shiga-toxin-converting bacteriophages","volume":"152","author":"Schmidt","year":"2001","journal-title":"Res. Microbiol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0185","doi-asserted-by":"crossref","first-page":"502","DOI":"10.1093\/bioinformatics\/18.3.502","article-title":"TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing","volume":"18","author":"Schmidt","year":"2002","journal-title":"Bioinformatics"},{"key":"10.1016\/j.meegid.2018.07.038_bb0190","doi-asserted-by":"crossref","first-page":"264","DOI":"10.1111\/j.1558-5646.1993.tb01215.x","article-title":"Isolation by distance in equilibrium and non-equilibrium populations","volume":"47","author":"Slatkin","year":"1993","journal-title":"Evolution"},{"key":"10.1016\/j.meegid.2018.07.038_bb0195","doi-asserted-by":"crossref","first-page":"4230","DOI":"10.1128\/JCM.42.9.4230-4236.2004","article-title":"Use of the minimum spanning tree model for molecular epidemiological investigation of a nosocomial outbreak of hepatitis C virus infection","volume":"42","author":"Spada","year":"2004","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0200","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1128\/iai.53.1.135-140.1986","article-title":"Two toxin-converting phages from Escherichia coli O157:H7 strain 933 encode antigenically distinct toxins with similar biologic activities","volume":"53","author":"Strockbine","year":"1986","journal-title":"Infect. Immun."},{"key":"10.1016\/j.meegid.2018.07.038_bb0205","doi-asserted-by":"crossref","first-page":"150","DOI":"10.1016\/j.meegid.2015.11.022","article-title":"Comparative analysis of the Shiga toxin converting bacteriophage first detected in Shigella sonnei","volume":"37","author":"Toth","year":"2016","journal-title":"Infect. Genet. Evol."},{"key":"10.1016\/j.meegid.2018.07.038_bb0210","doi-asserted-by":"crossref","first-page":"228","DOI":"10.1037\/a0027127","article-title":"Model selection and psychological theory: a discussion of the differences between the Akaike information criterion (AIC) and the Bayesian information criterion (BIC)","volume":"17","author":"Vrieze","year":"2012","journal-title":"Psychol. Methods"},{"key":"10.1016\/j.meegid.2018.07.038_bb0215","doi-asserted-by":"crossref","first-page":"431","DOI":"10.1093\/jhered\/esx033","article-title":"DAMBE6: new tools for microbial genomics, phylogenetics, and molecular evolution","volume":"108","author":"Xia","year":"2017","journal-title":"J. Hered."},{"key":"10.1016\/j.meegid.2018.07.038_bb0220","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1093\/jhered\/92.4.371","article-title":"DAMBE: software package for data analysis in molecular biology and evolution","volume":"92","author":"Xia","year":"2001","journal-title":"J. Hered."},{"key":"10.1016\/j.meegid.2018.07.038_bb0225","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S1055-7903(02)00326-3","article-title":"An index of substitution saturation and its application","volume":"26","author":"Xia","year":"2003","journal-title":"Mol. Phylogenet. Evol."}],"container-title":["Infection, Genetics and Evolution"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134818305586?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1567134818305586?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,27]],"date-time":"2025-10-27T14:35:09Z","timestamp":1761575709000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1567134818305586"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2018,11]]},"references-count":45,"alternative-id":["S1567134818305586"],"URL":"https:\/\/doi.org\/10.1016\/j.meegid.2018.07.038","relation":{},"ISSN":["1567-1348"],"issn-type":[{"type":"print","value":"1567-1348"}],"subject":[],"published":{"date-parts":[[2018,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Distribution and characterization of Shiga toxin converting temperate phages carried by Shigella flexneri in Hispaniola","name":"articletitle","label":"Article Title"},{"value":"Infection, Genetics and Evolution","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.meegid.2018.07.038","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2018 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}]}}