{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,9]],"date-time":"2026-10-09T16:38:55Z","timestamp":1791563935370,"version":"4.3.4"},"reference-count":40,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2020,10,1]],"date-time":"2020-10-01T00:00:00Z","timestamp":1601510400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2020,10,1]],"date-time":"2020-10-01T00:00:00Z","timestamp":1601510400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"funder":[{"DOI":"10.13039\/501100001503","name":"Indian Council of Agricultural Research","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001503","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Microbial Pathogenesis"],"published-print":{"date-parts":[[2020,10]]},"DOI":"10.1016\/j.micpath.2020.104368","type":"journal-article","created":{"date-parts":[[2020,7,4]],"date-time":"2020-07-04T11:08:37Z","timestamp":1593860917000},"page":"104368","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":33,"special_numbering":"C","title":["Emerging bacterial fish pathogen Lactococcus garvieae RTCLI04, isolated from rainbow trout (Oncorhynchus mykiss): Genomic features and comparative genomics"],"prefix":"10.1016","volume":"147","author":[{"given":"Neetu","family":"Shahi","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sumanta Kumar","family":"Mallik","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.micpath.2020.104368_bib1","doi-asserted-by":"crossref","first-page":"496","DOI":"10.1111\/j.1365-2672.2006.02951.x","article-title":"Differences between Lactococcus garvieae isolated from the genus Seriola in Japan and those isolated from other animals (trout, terrestrial animals from Europe) with regard to pathogenicity, phage susceptibility and genetic characterization","volume":"101","author":"Kawanishi","year":"2006","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib2","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1016\/j.cimid.2006.06.003","article-title":"Lactococcus garvieae in fish: a review","volume":"29","author":"Vendrell","year":"2006","journal-title":"Comp. Immunol. Microbiol. Infect. Dis."},{"key":"10.1016\/j.micpath.2020.104368_bib3","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/j.tmaid.2012.02.004","article-title":"Lactococcus garvieae multivalve infective endocarditis in a traveler returning from South Korea","volume":"10","author":"Fleming","year":"2012","journal-title":"Trav. Med. Infect. Dis."},{"key":"10.1016\/j.micpath.2020.104368_bib4","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1016\/j.vetmic.2014.03.029","article-title":"Experimental Lactococcus garvieae infection in zebrafish and first evidence of its ability to invade non-phagocytic cells","volume":"171","author":"Aguado-Urda","year":"2014","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib5","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1111\/zph.12162","article-title":"Lactococcus garvieae endocarditis on a prosthetic biological aortic valve","volume":"62","author":"Tsur","year":"2015","journal-title":"Zoonoses Public Health"},{"key":"10.1016\/j.micpath.2020.104368_bib6","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1016\/j.rvsc.2016.09.010","article-title":"The zoonotic potential of Lactococcus garvieae: an overview on microbiology, epidemiology, virulence factors and relationship with its presence in foods","volume":"109","author":"Gibello","year":"2016","journal-title":"Res. Vet. Sci."},{"key":"10.1016\/j.micpath.2020.104368_bib7","doi-asserted-by":"crossref","first-page":"67","DOI":"10.3354\/dao03083","article-title":"Lactococcus garvieae: an emerging bacterial pathogen of fish","volume":"123","author":"Meyburgh","year":"2017","journal-title":"Dis. Aquat. Org."},{"issue":"8","key":"10.1016\/j.micpath.2020.104368_bib8","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0023184","article-title":"Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae","volume":"6","author":"Morita","year":"2011","journal-title":"PloS One"},{"key":"10.1016\/j.micpath.2020.104368_bib9","first-page":"3427","article-title":"Streptococcus garvieae sp. nov and Streptococcus plantarum sp. Nov","volume":"129","author":"Collins","year":"1883","journal-title":"J. Gen. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib10","doi-asserted-by":"crossref","first-page":"406","DOI":"10.1099\/00207713-41-3-406","article-title":"Enetrococcus seriolicida sp. nov. a fish pathogen","volume":"41","author":"Kusuda","year":"1991","journal-title":"Int. J. Syst. Evol. Bacteriol."},{"key":"10.1016\/j.micpath.2020.104368_bib11","first-page":"9","article-title":"The first occurrence of lactococcosis in farmed trout in England","volume":"31","author":"Bark","year":"2001","journal-title":"Trout News"},{"key":"10.1016\/j.micpath.2020.104368_bib12","first-page":"319","article-title":"Lactococcus garvieae infection of cultured rainbow trout, Oncorhynchus mykiss, in Taiwan and associated biophysical characteristics and histopathology","volume":"22","author":"Chang","year":"2002","journal-title":"Bull. Eur. Assoc. Fish Pathol."},{"key":"10.1016\/j.micpath.2020.104368_bib13","first-page":"1473","article-title":"Antibiotic susceptibility of Lactococcus garvieae isolated from rainbow trout (Oncorhynchus mykiss) in Iran fish farms","volume":"10","author":"Raissy","year":"2011","journal-title":"Afr. J. Biotechnol."},{"key":"10.1016\/j.micpath.2020.104368_bib14","doi-asserted-by":"crossref","DOI":"10.1128\/genomeA.00781-16","article-title":"Draft genome sequence of Lactococcus garvieae strain PAQ102015-99, an outbreak strain isolated from a commercial trout farm in the northwestern United States","volume":"4","author":"Nelson","year":"2016","journal-title":"Genome Announc."},{"key":"10.1016\/j.micpath.2020.104368_bib15","first-page":"1","article-title":"First report on characterization and pathogenicity study of emerging Lactococcus garvieae infection in farmed rainbow trout, Oncorhynchus mykiss (Walbaum), from India","author":"Shahi","year":"2018","journal-title":"Transbound. Emerg. Dis."},{"key":"10.1016\/j.micpath.2020.104368_bib16","doi-asserted-by":"crossref","first-page":"59","DOI":"10.3354\/dao02981","article-title":"Detection of putative virulence genes of Lactococcus garvieae","volume":"119","author":"Ture","year":"2016","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.micpath.2020.104368_bib17","doi-asserted-by":"crossref","first-page":"5132","DOI":"10.1128\/AEM.70.9.5132-5137.2004","article-title":"Clonality and diversity of the fish pathogen Lactococcus garvieae in Mediterranean countries","volume":"70","author":"Eyngor","year":"2004","journal-title":"Appl. Environ. Microbiol."},{"issue":"6","key":"10.1016\/j.micpath.2020.104368_bib18","doi-asserted-by":"crossref","first-page":"404","DOI":"10.1006\/mpat.1999.0316","article-title":"Identification of genes in a KG\u2212 phenotype of Lactococcus garvieae, a fish pathogenic bacterium, whose proteins react with antiKG\u2212 rabbit serum","volume":"27","author":"Hirono","year":"1999","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.micpath.2020.104368_bib19","doi-asserted-by":"crossref","first-page":"4033","DOI":"10.1128\/JB.05090-11","article-title":"Genome sequence of Lactococcus garvieae 21881, isolated in a case of human septicemia","volume":"193","author":"Aguado-Urda","year":"2011","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micpath.2020.104368_bib20","doi-asserted-by":"crossref","first-page":"821","DOI":"10.1101\/gr.074492.107","article-title":"Velvet: algorithms for de novo short read assembly using de Bruijn graphs","volume":"18","author":"Zerbino","year":"2008","journal-title":"Genome Res."},{"key":"10.1016\/j.micpath.2020.104368_bib21","doi-asserted-by":"crossref","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: consistent and rapid annotation of ribosomal RNA genes","volume":"9","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.micpath.2020.104368_bib22","doi-asserted-by":"crossref","first-page":"24373","DOI":"10.1038\/srep24373","article-title":"BPGA-an ultra-fast pan-genome analysis pipeline","volume":"6","author":"Chaudhari","year":"2016","journal-title":"Sci. Rep."},{"issue":"8","key":"10.1016\/j.micpath.2020.104368_bib23","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0104984","article-title":"Solving the problem of comparing whole bacterial genomes across different sequencing platforms","volume":"9","author":"Kaas","year":"2014","journal-title":"PloS One"},{"key":"10.1016\/j.micpath.2020.104368_bib24","doi-asserted-by":"crossref","first-page":"759","DOI":"10.1111\/j.1469-0691.2005.01210.x","article-title":"Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors","volume":"11","author":"Underwood","year":"2005","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.micpath.2020.104368_bib25","doi-asserted-by":"crossref","first-page":"3348","DOI":"10.1128\/AAC.00419-13","article-title":"The comprehensive antibiotic resistance database","volume":"57","author":"McArthur","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.micpath.2020.104368_bib26","doi-asserted-by":"crossref","first-page":"D694","DOI":"10.1093\/nar\/gkv1239","article-title":"Vfdb 2016: hierarchical and refined dataset for big data analysis-10 years on","volume":"44","author":"Chen","year":"2015","journal-title":"Nucleic Acids Res."},{"issue":"12","key":"10.1016\/j.micpath.2020.104368_bib27","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0084796","article-title":"Lactococcus garvieae: where is it from? A first approach to explore the evolutionary history of this emerging pathogen","volume":"8","author":"Ferrario","year":"2013","journal-title":"PloS One"},{"key":"10.1016\/j.micpath.2020.104368_bib28","doi-asserted-by":"crossref","DOI":"10.1155\/2012\/728276","article-title":"Comparative genomic analysis of Lactococcus garvieae strains isolated from different sources reveals candidate virulence genes","author":"Miyauchi","year":"2012","journal-title":"Internet J. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib29","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1016\/j.vetmic.2006.08.021","article-title":"Immunoproteomic analysis of capsulate and non-capsulate strains of Lactococcus garvieae","volume":"119","author":"Shin","year":"2007","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib30","doi-asserted-by":"crossref","first-page":"481","DOI":"10.1111\/j.1472-765X.2007.02114.x","article-title":"Characterization of Lactococcus garvieae isolated from radish and broccoli sprouts that exhibited a KG+ phenotype, lack of virulence and absence of a capsule","volume":"44","author":"Kawanishi","year":"2007","journal-title":"Lett. Appl. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib31","doi-asserted-by":"crossref","DOI":"10.1128\/genomeA.00592-16","article-title":"Complete genome sequence of non-agglutinating Lactococcus garvieae strain 122061","author":"Nishiki","year":"2016","journal-title":"Genome Announc."},{"key":"10.1016\/j.micpath.2020.104368_bib32","first-page":"3","article-title":"Draft genome sequence of human-pathogenic Lactococcus garvieae Lg-201105 that caused acute acalculous cholecystitis","volume":"4","author":"Kim","year":"2015","journal-title":"Genome Announc."},{"key":"10.1016\/j.micpath.2020.104368_bib33","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1111\/j.1365-2761.1982.tb00506.x","article-title":"Studies on the pathogenesis of streptococcal infection in cultures yellowtails Seriola spp.: effect of crude exotoxin fraction from cell free on experimental streptococcal infection","volume":"5","author":"Kimura","year":"1982","journal-title":"J. Fish. Dis."},{"key":"10.1016\/j.micpath.2020.104368_bib34","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/S0378-1135(02)00440-6","article-title":"Antigen recognition by rainbow trout (Oncorhynchus mykiss) of whole cell proteins expressed by Lactococcus garvieae when obtained directly from fish and under iron limited culture conditions","volume":"93","author":"Schmidtke","year":"2003","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib35","doi-asserted-by":"crossref","first-page":"169","DOI":"10.3354\/dao051169","article-title":"Cell surface properties of Lactococcus garvieae strains and their immunogenicity in the yellowtail Seriola quinqueradiata","volume":"51","author":"Ooyama","year":"2002","journal-title":"Dis. Aquat. Org."},{"key":"10.1016\/j.micpath.2020.104368_bib36","doi-asserted-by":"crossref","first-page":"437","DOI":"10.2323\/jgam.59.437","article-title":"Immunoprotection of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Lactococcus garvieae against lactococcosis in tilapia","volume":"59","author":"Tsai","year":"2013","journal-title":"J. Gen. Appl. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib37","doi-asserted-by":"crossref","first-page":"1137","DOI":"10.1111\/j.1462-2920.2006.01054.x","article-title":"Heavy use of prophylactic antibiotics in aquaculture: a growing problem for human and animal health and for the environment","volume":"8","author":"Cabello","year":"2006","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib38","doi-asserted-by":"crossref","first-page":"1296","DOI":"10.1128\/jcm.34.5.1296-1298.1996","article-title":"Antimicrobial susceptibilities of Lactococcus lactis and Lactococcus garvieae and a proposed method to discriminate between them","volume":"34","author":"Elliott","year":"1996","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.micpath.2020.104368_bib39","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1111\/j.1365-2761.2008.00927.x","article-title":"Drug resistance mechanism of the fish-pathogenic bacterium Lactococcus garvieae","volume":"31","author":"Maki","year":"2008","journal-title":"J. Fish. Dis."},{"key":"10.1016\/j.micpath.2020.104368_bib40","doi-asserted-by":"crossref","first-page":"322","DOI":"10.1111\/j.1472-765X.2005.01690.x","article-title":"Drug resistance and pulsed-field gel electrophoresis patterns of Lactococcus garvieae isolates from cultured Seriola (yellowtail, amberjack and kingfish) in Japan","volume":"40","author":"Kawanishi","year":"2005","journal-title":"Lett. Appl. Microbiol."}],"container-title":["Microbial Pathogenesis"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401020307348?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401020307348?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,10]],"date-time":"2025-10-10T15:35:42Z","timestamp":1760110542000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0882401020307348"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,10]]},"references-count":40,"alternative-id":["S0882401020307348"],"URL":"https:\/\/doi.org\/10.1016\/j.micpath.2020.104368","relation":{},"ISSN":["0882-4010"],"issn-type":[{"value":"0882-4010","type":"print"}],"subject":[],"published":{"date-parts":[[2020,10]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Emerging bacterial fish pathogen Lactococcus garvieae RTCLI04, isolated from rainbow trout (Oncorhynchus mykiss): Genomic features and comparative genomics","name":"articletitle","label":"Article Title"},{"value":"Microbial Pathogenesis","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.micpath.2020.104368","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2020 Elsevier Ltd. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"104368"}}