{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,29]],"date-time":"2026-09-29T18:32:29Z","timestamp":1790706749387,"version":"4.1.0"},"reference-count":34,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2022,3,1]],"date-time":"2022-03-01T00:00:00Z","timestamp":1646092800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Microbial Pathogenesis"],"published-print":{"date-parts":[[2022,3]]},"DOI":"10.1016\/j.micpath.2022.105409","type":"journal-article","created":{"date-parts":[[2022,1,15]],"date-time":"2022-01-15T11:12:29Z","timestamp":1642245149000},"page":"105409","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":43,"special_numbering":"C","title":["Evaluation of bacterial agents isolated from endotracheal aspirate cultures of Covid-19 general intensive care patients and their antibiotic resistance profiles compared to pre-pandemic conditions"],"prefix":"10.1016","volume":"164","author":[{"given":"Yasemin Gen\u00e7","family":"Bah\u00e7e","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"\u00d6mer","family":"Acer","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Osman","family":"\u00d6z\u00fcdo\u011fru","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.micpath.2022.105409_bib1","first-page":"112830","article-title":"Diagnosis of COVID-19 for controlling the pandemic: a review of the state-of-the-art","author":"Taleghani","year":"2020","journal-title":"Biosens. Bioelectron."},{"key":"10.1016\/j.micpath.2022.105409_bib2","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1097\/QCO.0000000000000447","article-title":"When do co-infections matter?","volume":"31","author":"McArdle","year":"2018","journal-title":"Curr. Opin. Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib3","doi-asserted-by":"crossref","first-page":"336","DOI":"10.3389\/fimmu.2019.00336","article-title":"Mechanisms of bacterial superinfection post-influenza: a role for unconventional T cells","volume":"10","author":"Paget","year":"2019","journal-title":"Front. Immunol."},{"key":"10.1016\/j.micpath.2022.105409_bib4","doi-asserted-by":"crossref","first-page":"30","DOI":"10.1016\/j.mib.2016.11.003","article-title":"Viral\u2013bacterial co-infections in the respiratory tract","volume":"35","author":"Bakaletz","year":"2017","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.micpath.2022.105409_bib5","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1038\/nrmicro3231","article-title":"The co-pathogenesis of influenza viruses with bacteria in the lung","volume":"12","author":"McCullers","year":"2014","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.micpath.2022.105409_bib6","doi-asserted-by":"crossref","first-page":"338","DOI":"10.3389\/fcimb.2017.00338","article-title":"Mechanisms of severe mortality-associated bacterial co-infections following influenza virus infection","volume":"7","author":"Jia","year":"2017","journal-title":"Front Cell Infect Microbiol"},{"key":"10.1016\/j.micpath.2022.105409_bib7","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12879-018-3366-4","article-title":"Impact of microbial Aetiology on mortality in severe community-acquired pneumonia","volume":"18","author":"Quah","year":"2018","journal-title":"BMC Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib8","doi-asserted-by":"crossref","first-page":"1487","DOI":"10.1097\/CCM.0b013e3182416f23","article-title":"Critical illness from 2009 pandemic influenza A (H1N1) virus and bacterial co-infection in the United States","volume":"40","author":"Rice","year":"2012","journal-title":"Crit. Care Med."},{"key":"10.1016\/j.micpath.2022.105409_bib9","first-page":"17","article-title":"Risk of ruling out severe acute respiratory syndrome by ruling in another diagnosis: variable incidence of atypical bacteria coinfection based on diagnostic assays","volume":"13","author":"Zahariadis","year":"2006","journal-title":"Cancer Res. J."},{"key":"10.1016\/j.micpath.2022.105409_bib10","doi-asserted-by":"crossref","first-page":"275","DOI":"10.1001\/jama.2012.194139","article-title":"Bacterial coinfection in influenza: a grand rounds review","volume":"309","author":"Chertow","year":"2013","journal-title":"JAMA"},{"key":"10.1016\/j.micpath.2022.105409_bib11","doi-asserted-by":"crossref","first-page":"1054","DOI":"10.1016\/S0140-6736(20)30566-3","article-title":"Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study","volume":"395","author":"Zhou","year":"2020","journal-title":"Lancet"},{"key":"10.1016\/j.micpath.2022.105409_bib12","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1093\/cid\/ciaa272","article-title":"Clinical features of 69 cases with coronavirus disease 2019 in Wuhan, China","volume":"71","author":"Wang","year":"2020","journal-title":"Clin. Infect. Dis."},{"issue":"3","key":"10.1016\/j.micpath.2022.105409_bib13","doi-asserted-by":"crossref","first-page":"1700582","DOI":"10.1183\/13993003.00582-2017","volume":"50","author":"Torres","year":"2017","journal-title":"Eur. Respir. J."},{"key":"10.1016\/j.micpath.2022.105409_bib14","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1501\/Tipfak_0000000711","article-title":"N\u00f6roloji yo\u011fun bak\u0131m \u00fcnitesinde yatan hastalardan izole edilen hastane infeksiyonu etkenleri","volume":"62","author":"\u00c7etin","year":"2009","journal-title":"Ankara \u00dcniv T\u0131p Fak Mecm."},{"key":"10.1016\/j.micpath.2022.105409_bib15","first-page":"81","article-title":"Ventilat\u00f6r ili\u015fkili pn\u00f6moni tan\u0131s\u0131nda endotrakeal aspirat k\u00fclt\u00fcrleri: 2004-2006 y\u0131llar\u0131 sonu\u00e7lar\u0131","volume":"21","author":"\u015eafak","year":"2007","journal-title":"Ankem Derg."},{"key":"10.1016\/j.micpath.2022.105409_bib16","first-page":"95","article-title":"Ventilat\u00f6r ili\u015fkili pn\u00f6moni tan\u0131s\u0131nda bronkoskopik ve bronkoskopik olmayan y\u00f6ntemler\u0131n tan\u0131sal etkinliklerinin kar\u015f\u0131la\u015ft\u0131r\u0131lmas\u0131","volume":"8","author":"\u00c7elik","year":"2006","journal-title":"Solunum"},{"key":"10.1016\/j.micpath.2022.105409_bib17","series-title":"A Cohort of Patients with COVID-19 in a Major Teaching Hospital in Europe","author":"Borobia","year":"2020"},{"key":"10.1016\/j.micpath.2022.105409_bib18","doi-asserted-by":"crossref","first-page":"1124","DOI":"10.1017\/ice.2020.156","article-title":"Bacterial and fungal infections in COVID-19 patients: a matter of concern","volume":"41","author":"Zhou","year":"2020","journal-title":"Infect. Control Hosp. Epidemiol."},{"key":"10.1016\/j.micpath.2022.105409_bib19","doi-asserted-by":"crossref","first-page":"2459","DOI":"10.1093\/cid\/ciaa530","article-title":"Bacterial and fungal coinfection in individuals with coronavirus: a rapid review to support COVID-19 antimicrobial prescribing","volume":"71","author":"Rawson","year":"2020","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib20","doi-asserted-by":"crossref","first-page":"6","DOI":"10.5812\/archcid.86416","article-title":"Prevalence of Streptococcus pneumoniae in ventilator-associated pneumonia by real-time PCR","volume":"14","author":"Sharifi","year":"2019","journal-title":"Arch. Clin. Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib21","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12879-020-05374-z","article-title":"Evaluation of bacterial co-infections of the respiratory tract in COVID-19 patients admitted to ICU","volume":"20","author":"Sharifipour","year":"2020","journal-title":"BMC Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib22","doi-asserted-by":"crossref","first-page":"920","DOI":"10.1016\/j.jmii.2019.10.009","article-title":"Performance of a multiplex PCR pneumonia panel for the identification of respiratory pathogens and the main determinants of resistance from the lower respiratory tract specimens of adult patients in intensive care units","volume":"52","author":"Lee","year":"2019","journal-title":"J. Microbiol. Immunol. Infect."},{"issue":"4","key":"10.1016\/j.micpath.2022.105409_bib23","doi-asserted-by":"crossref","first-page":"355","DOI":"10.5505\/TurkHijyen.2016.84755","article-title":"Yo\u011fun bak\u0131m hastalar\u0131nda hastane kaynakl\u0131 pn\u00f6moni olgular\u0131n\u0131n de\u011ferlendirilmesi ve s\u0131k g\u00f6r\u00fclen bakteriyel etkenlerin antimikrobiyallere diren\u00e7lerinin ara\u015ft\u0131r\u0131lmas\u0131","volume":"73","author":"Gen\u00e7","year":"2016","journal-title":"Turk Hij Den Biyol Derg"},{"key":"10.1016\/j.micpath.2022.105409_bib24","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1007\/s10096-020-04142-w","article-title":"Nosocomial infections associated to COVID-19 in the intensive care unit: clinical characteristics and outcome","volume":"40","author":"Bardi","year":"2021","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib25","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1016\/j.jhin.2017.12.008","article-title":"Regional point prevalence study of healthcare-associated infections and antimicrobial use in acute care hospitals in Liguria","volume":"99","author":"Sticchi","year":"2018","journal-title":"Italy. J Hosp Infect."},{"key":"10.1016\/j.micpath.2022.105409_bib26","doi-asserted-by":"crossref","first-page":"266","DOI":"10.1016\/j.jinf.2020.05.046","article-title":"Co-infections in people with COVID-19: a systematic review and meta-analysis","volume":"81","author":"Lansbury","year":"2020","journal-title":"J. Infect."},{"key":"10.1016\/j.micpath.2022.105409_bib27","first-page":"168","article-title":"Investigation of bacterial coinfection among hospitalized patients with COVID-19: a retrospective study in A Turkey training and research hospital","volume":"15","author":"Acer","year":"2021","journal-title":"Int. J. Clin. Ski."},{"key":"10.1016\/j.micpath.2022.105409_bib28","doi-asserted-by":"crossref","first-page":"859","DOI":"10.1007\/s10096-020-04063-8","article-title":"Rates of bacterial co-infections and antimicrobial use in COVID-19 patients: a retrospective cohort study in light of antibiotic stewardship","volume":"40","author":"Rothe","year":"2021","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."},{"key":"10.1016\/j.micpath.2022.105409_bib29","doi-asserted-by":"crossref","first-page":"451","DOI":"10.1016\/j.cmi.2020.10.021","article-title":"Secondary infections in patients hospitalized with COVID-19: incidence and predictive factors","volume":"27","author":"Ripa","year":"2021","journal-title":"Clin. Microbiol. Infect."},{"issue":"4\u20135","key":"10.1016\/j.micpath.2022.105409_bib30","article-title":"Full title: bacterial and fungal co-infections among COVID-19 patients in intensive","volume":"23","author":"Yang","year":"2021","journal-title":"Microb. Infect."},{"key":"10.1016\/j.micpath.2022.105409_bib31","series-title":"Ulusal Sa\u011fl\u0131k Hizmeti \u0130li\u015fkili Enfeksiyonlar S\u00fcrveyans A\u011f\u0131 \u00d6zet Raporu","author":"Bakanl\u0131\u011f\u0131","year":"2017"},{"key":"10.1016\/j.micpath.2022.105409_bib32","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1177\/0885066615619895","article-title":"Antimicrobial resistance in the intensive care unit: a focus on gram-negative bacterial infections","volume":"32","author":"MacVane","year":"2017","journal-title":"J. Intensive Care Med."},{"key":"10.1016\/j.micpath.2022.105409_bib33","series-title":"Annual Report of the European Antimicrobial Resistance Surveillance Network (EARS-Net)","author":"Arsi","year":"2017"},{"issue":"10","key":"10.1016\/j.micpath.2022.105409_bib34","doi-asserted-by":"crossref","first-page":"2736","DOI":"10.1093\/cid\/ciaa524","article-title":"COVID-19, superinfections and antimicrobial development: what can we expect?","volume":"71","author":"Clancy","year":"2020","journal-title":"Clin. Infect. Dis."}],"container-title":["Microbial Pathogenesis"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401022000225?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401022000225?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,10]],"date-time":"2025-10-10T15:48:47Z","timestamp":1760111327000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0882401022000225"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,3]]},"references-count":34,"alternative-id":["S0882401022000225"],"URL":"https:\/\/doi.org\/10.1016\/j.micpath.2022.105409","relation":{},"ISSN":["0882-4010"],"issn-type":[{"value":"0882-4010","type":"print"}],"subject":[],"published":{"date-parts":[[2022,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Evaluation of bacterial agents isolated from endotracheal aspirate cultures of Covid-19 general intensive care patients and their antibiotic resistance profiles compared to pre-pandemic conditions","name":"articletitle","label":"Article Title"},{"value":"Microbial Pathogenesis","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.micpath.2022.105409","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2022 Elsevier Ltd. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"105409"}}