{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,12]],"date-time":"2025-07-12T01:16:15Z","timestamp":1752282975473,"version":"3.37.3"},"reference-count":33,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,2,1]],"date-time":"2025-02-01T00:00:00Z","timestamp":1738368000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Microbial Pathogenesis"],"published-print":{"date-parts":[[2025,2]]},"DOI":"10.1016\/j.micpath.2024.107220","type":"journal-article","created":{"date-parts":[[2024,12,10]],"date-time":"2024-12-10T16:34:10Z","timestamp":1733848450000},"page":"107220","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"special_numbering":"C","title":["Genomic analysis of colistin and carbapenem resistant Klebsiella pneumoniae GC29"],"prefix":"10.1016","volume":"199","author":[{"given":"Parvathi","family":"Vaikkathillam","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5239-4115","authenticated-orcid":false,"given":"Anusree","family":"Sajeevan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7692-163X","authenticated-orcid":false,"given":"Suma","family":"Mohan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adline Princy","family":"Solomon","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pooja P.","family":"Rajan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Manjusree","family":"S","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2584-0703","authenticated-orcid":false,"given":"Praveen","family":"Kumar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sabu","family":"Thomas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.micpath.2024.107220_bib1","doi-asserted-by":"crossref","first-page":"4","DOI":"10.3389\/fcimb.2018.00004","article-title":"Colonization, infection, and the accessory genome of Klebsiella pneumoniae","volume":"8","author":"Martin","year":"2018","journal-title":"Front. Cell. Infect. Microbiol."},{"key":"10.1016\/j.micpath.2024.107220_bib2","article-title":"Klebsiella pneumonia and its antibiotic resistance: a bibliometric analysis","author":"Li","year":"2022","journal-title":"BioMed Res. Int."},{"key":"10.1016\/j.micpath.2024.107220_bib3","doi-asserted-by":"crossref","first-page":"2793","DOI":"10.1128\/JCM.00841-15","article-title":"An investigation into laboratory misidentification of a bloodstream Klebsiella variicola infection","volume":"53","author":"Berry","year":"2015","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.micpath.2024.107220_bib4","doi-asserted-by":"crossref","first-page":"208","DOI":"10.1186\/cc13775","article-title":"Ventilator associated pneumonia in the ICU","volume":"18","author":"Kalanuria","year":"2014","journal-title":"Crit. Care"},{"key":"10.1016\/j.micpath.2024.107220_bib5","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1056\/NEJMoa1306801","article-title":"Multistate point prevalence survey of healthcare associated infections","volume":"370","author":"Magill","year":"2014","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.micpath.2024.107220_bib6","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1128\/CMR.11.4.589","article-title":"Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors","volume":"11","author":"Podschun","year":"1998","journal-title":"Clin. Microbiol. Rev."},{"key":"10.1016\/j.micpath.2024.107220_bib7","doi-asserted-by":"crossref","first-page":"85","DOI":"10.3390\/antibiotics8030085","article-title":"Antimicrobial resistance in bacterial pathogens and detection of carbapenemases in Klebsiella pneumoniae isolates from hospital wastewater","volume":"8","author":"Sakkas","year":"2019","journal-title":"Antibiotics (Basel)"},{"key":"10.1016\/j.micpath.2024.107220_bib8","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1186\/s12879-023-08633-x","article-title":"Antimicrobial resistance pattern of Klebsiella isolated from various clinical samples in Ethiopia: a systematic review and meta-analysis","volume":"23","author":"Gebremeskel","year":"2023","journal-title":"BMC Infect. Dis."},{"key":"10.1016\/j.micpath.2024.107220_bib9","doi-asserted-by":"crossref","first-page":"539","DOI":"10.3389\/fmicb.2019.00539","article-title":"Emerging strategies to combat ESKAPE Pathogens in the era of antimicrobial resistance: a review","volume":"10","author":"Mulani","year":"2019","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micpath.2024.107220_bib10","doi-asserted-by":"crossref","first-page":"13","DOI":"10.1186\/s40560-020-0429-6","article-title":"Molecular diversity of extended-spectrum \u03b2-lactamases and carbapenemases, and antimicrobial resistance","volume":"8","author":"Sawa","year":"2020","journal-title":"J. Intensive Care."},{"key":"10.1016\/j.micpath.2024.107220_bib11","doi-asserted-by":"crossref","first-page":"934","DOI":"10.3390\/jcm8070934","article-title":"Treatment options for colistin resistant Klebsiella pneumoniae: present and future","volume":"8","author":"Petrosillo","year":"2019","journal-title":"J. Clin. Med."},{"key":"10.1016\/j.micpath.2024.107220_bib12","doi-asserted-by":"crossref","first-page":"234","DOI":"10.3390\/antibiotics12020234","article-title":"Carbapenem resistant Klebsiella pneumoniae: virulence factors, molecular epidemiology and latest updates in treatment options","volume":"12","author":"Karampatakis","year":"2023","journal-title":"Antibiotics (Basel)"},{"key":"10.1016\/j.micpath.2024.107220_bib13","article-title":"Extensively drug-resistant hypervirulent Klebsiella pneumoniae from a series of neonatal sepsis in a tertiary care hospital, India","volume":"8","author":"Banerjee","year":"2021","journal-title":"Front Med (Lausanne)"},{"key":"10.1016\/j.micpath.2024.107220_bib14","doi-asserted-by":"crossref","first-page":"2191","DOI":"10.2147\/IDR.S405816","article-title":"Occurrence and genomic characteristics of hypervirulent Klebsiella pneumoniae in a tertiary care hospital, eastern India","volume":"16","author":"Yadav","year":"2023","journal-title":"IDR"},{"key":"10.1016\/j.micpath.2024.107220_bib15","doi-asserted-by":"crossref","first-page":"1035","DOI":"10.1001\/jama.2014.1717","article-title":"Clinical interpretation and implications of whole-genome sequencing","volume":"311","author":"Dewey","year":"2014","journal-title":"JAMA"},{"key":"10.1016\/j.micpath.2024.107220_bib16","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/j.jgar.2019.04.008","article-title":"Genome sequence of a multidrug resistant Klebsiella pneumoniae ST78 with high colistin resistance isolated from a patient in India","volume":"17","author":"Paul","year":"2019","journal-title":"J. Glob. Antimicrob Resist."},{"key":"10.1016\/j.micpath.2024.107220_bib17","doi-asserted-by":"crossref","first-page":"2666","DOI":"10.1093\/bioinformatics\/bty149","article-title":"NanoPack: visualizing and processing long-read sequencing data","volume":"34","author":"De Coster","year":"2018","journal-title":"Bioinform"},{"key":"10.1016\/j.micpath.2024.107220_bib18","doi-asserted-by":"crossref","first-page":"257","DOI":"10.1186\/s13059-019-1891-0","article-title":"Improved metagenomic analysis with Kraken 2","volume":"20","author":"Wood","year":"2019","journal-title":"Genome Biol."},{"key":"10.1016\/j.micpath.2024.107220_bib19","doi-asserted-by":"crossref","first-page":"1928","DOI":"10.1093\/bioinformatics\/btu135","article-title":"Orione, a web-based framework for NGS analysis in microbiology","volume":"30","author":"Cuccuru","year":"2014","journal-title":"Bioinform"},{"key":"10.1016\/j.micpath.2024.107220_bib20","doi-asserted-by":"crossref","first-page":"2068","DOI":"10.1093\/bioinformatics\/btu153","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinform"},{"key":"10.1016\/j.micpath.2024.107220_bib22","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0011147","article-title":"Progressive mauve: multiple genome alignment with gene gain, loss and rearrangement","volume":"5","author":"Darling","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.micpath.2024.107220_bib23","series-title":"Model Organisms for Microbial Pathogenesis, Biofilm Formation and Antimicrobial Drug Discovery","first-page":"195","article-title":"Klebsiella pneumoniae infections and antimicrobial drug resistance","author":"Priyanka","year":"2020"},{"key":"10.1016\/j.micpath.2024.107220_bib24","doi-asserted-by":"crossref","first-page":"1403","DOI":"10.1016\/j.ajic.2019.05.017","article-title":"The challenges of antimicrobial resistance surveillance in China","volume":"47","author":"Wang","year":"2019","journal-title":"Am. J. Infect. Control"},{"key":"10.1016\/j.micpath.2024.107220_bib25","doi-asserted-by":"crossref","first-page":"6266","DOI":"10.1038\/s41598-019-42672-2","article-title":"Whole genome sequencing of extended spectrum \u03b2-lactamase (ESBL) producing Klebsiella pneumoniae isolated from hospitalized patients in Kwa Zulu-Natal, South Africa","volume":"9","author":"Founou","year":"2019","journal-title":"Sci. Rep."},{"key":"10.1016\/j.micpath.2024.107220_bib26","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0265884","article-title":"Whole genome sequencing of Klebsiella pneumoniae clinical isolates sequence type 627 isolated from Egyptian patients","volume":"17","author":"Enany","year":"2022","journal-title":"PLoS One"},{"key":"10.1016\/j.micpath.2024.107220_bib27","doi-asserted-by":"crossref","first-page":"4267","DOI":"10.1128\/AAC.00052-11","article-title":"Comparative genomics of Klebsiella pneumoniae strains with different antibiotic resistance profiles","volume":"55","author":"Kumar","year":"2011","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.micpath.2024.107220_bib28","first-page":"93","article-title":"Relationship of OqxAB efflux pump to antibiotic resistance, mainly fluoroquinolones in Klebsiella pneumoniae, isolated from hospitalized patients","volume":"26","author":"Amereh","year":"2023","journal-title":"Iran J. Basic Med. Sci."},{"key":"10.1016\/j.micpath.2024.107220_bib29","doi-asserted-by":"crossref","first-page":"2172","DOI":"10.14202\/vetworld.2022.2172-2179","article-title":"A review: virulence factors of Klebsiella pneumonia as emerging infection on the food chain","volume":"15","author":"Riwu","year":"2022","journal-title":"Vet. World"},{"key":"10.1016\/j.micpath.2024.107220_bib30","doi-asserted-by":"crossref","first-page":"3783","DOI":"10.1128\/IAI.72.7.3783-3792.2004","article-title":"Isolation of a chromosomal region of Klebsiella pneumoniae associated with allantoin metabolism and liver infection","volume":"72","author":"Chou","year":"2004","journal-title":"Infect. Immun."},{"key":"10.1016\/j.micpath.2024.107220_bib31","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1016\/j.meegid.2010.09.006","article-title":"Distribution of the putative type VI secretion system core genes in Klebsiella spp","volume":"11","author":"Sarris","year":"2011","journal-title":"Infect. Genet. Evol."},{"key":"10.1016\/j.micpath.2024.107220_bib32","doi-asserted-by":"crossref","first-page":"3104","DOI":"10.3389\/fmicb.2019.03104","article-title":"Genomic analysis of putative virulence factors affecting cytotoxicity of cronobacter","volume":"10","author":"Cui","year":"2020","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micpath.2024.107220_bib33","doi-asserted-by":"crossref","first-page":"1355","DOI":"10.1128\/JCM.06094-11","article-title":"Multilocus sequence typing of total genome sequenced bacteria","volume":"50","author":"Larsen","year":"2012","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.micpath.2024.107220_bib34","doi-asserted-by":"crossref","first-page":"1100","DOI":"10.1099\/ijsem.0.000760","article-title":"OrthoANI: an improved algorithm and software for calculating average nucleotide identity","volume":"66","author":"Lee","year":"2016","journal-title":"Int. J. Syst. Evol. Microbiol."}],"container-title":["Microbial Pathogenesis"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401024006879?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401024006879?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,2,23]],"date-time":"2025-02-23T21:33:00Z","timestamp":1740346380000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0882401024006879"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,2]]},"references-count":33,"alternative-id":["S0882401024006879"],"URL":"https:\/\/doi.org\/10.1016\/j.micpath.2024.107220","relation":{},"ISSN":["0882-4010"],"issn-type":[{"type":"print","value":"0882-4010"}],"subject":[],"published":{"date-parts":[[2025,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genomic analysis of colistin and carbapenem resistant Klebsiella pneumoniae GC29","name":"articletitle","label":"Article Title"},{"value":"Microbial Pathogenesis","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.micpath.2024.107220","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"107220"}}