{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,9]],"date-time":"2026-10-09T21:11:07Z","timestamp":1791580267827,"version":"4.3.4"},"reference-count":131,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,7,1]],"date-time":"2025-07-01T00:00:00Z","timestamp":1751328000000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100004835","name":"Zhejiang University","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004835","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002855","name":"Ministry of Science and Technology of the People's Republic of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002855","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012166","name":"National Key Research and Development Program of China","doi-asserted-by":"publisher","award":["2024YFD2402201"],"award-info":[{"award-number":["2024YFD2402201"]}],"id":[{"id":"10.13039\/501100012166","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Microbial Pathogenesis"],"published-print":{"date-parts":[[2025,7]]},"DOI":"10.1016\/j.micpath.2025.107642","type":"journal-article","created":{"date-parts":[[2025,4,27]],"date-time":"2025-04-27T01:35:47Z","timestamp":1745717747000},"page":"107642","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":9,"special_numbering":"C","title":["Impact of prophages on gut microbiota and disease associations"],"prefix":"10.1016","volume":"204","author":[{"given":"Aminu Abdullahi","family":"Mahmoud","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiaoyu","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xinyu","family":"Liao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Song","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tian","family":"Ding","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9341-009X","authenticated-orcid":false,"given":"Juhee","family":"Ahn","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.micpath.2025.107642_bib1","doi-asserted-by":"crossref","first-page":"1823","DOI":"10.1042\/BCJ20160510","article-title":"Introduction to the human gut microbiota","volume":"474","author":"Thursby","year":"2017","journal-title":"Biochem. J."},{"key":"10.1016\/j.micpath.2025.107642_bib2","doi-asserted-by":"crossref","first-page":"55","DOI":"10.1038\/s41579-020-0433-9","article-title":"Gut microbiota in human metabolic health and disease","volume":"19","author":"Fan","year":"2021","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib3","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1111\/imr.12190","article-title":"Maturation of the enteric mucosal innate immune system during the postnatal period","volume":"260","author":"Fulde","year":"2014","journal-title":"Immunol. Rev."},{"key":"10.1016\/j.micpath.2025.107642_bib4","doi-asserted-by":"crossref","first-page":"10038","DOI":"10.1073\/pnas.1507645112","article-title":"Gut microbiota facilitates dietary heme-induced epithelial hyperproliferation by opening the mucus barrier in colon","volume":"112","author":"Ijssennagger","year":"2015","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"10.1016\/j.micpath.2025.107642_bib5","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1038\/ni.2608","article-title":"Control of pathogens and pathobionts by the gut microbiota","volume":"14","author":"Kamada","year":"2013","journal-title":"Nat. Immunol."},{"key":"10.1016\/j.micpath.2025.107642_bib6","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1093\/femsre\/fuu010","article-title":"Microbial endocrinology: the interplay between the microbiota and the endocrine system","volume":"39","author":"Neuman","year":"2015","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.micpath.2025.107642_bib7","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodres.2021.110331","article-title":"The influence of gut microbiome on bone health and related dietary strategies against bone dysfunctions","volume":"144","author":"Peng","year":"2021","journal-title":"Food Res. Int."},{"key":"10.1016\/j.micpath.2025.107642_bib8","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1038\/nature10893","article-title":"Tissue factor and PAR1 promote microbiota-induced intestinal vascular remodelling","volume":"483","author":"Reinhardt","year":"2012","journal-title":"Nature"},{"key":"10.1016\/j.micpath.2025.107642_bib9","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1038\/s41422-020-0332-7","article-title":"Interaction between microbiota and immunity in health and disease","volume":"30","author":"Zheng","year":"2020","journal-title":"Cell Res."},{"key":"10.1016\/j.micpath.2025.107642_bib10","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.999001","article-title":"Human gut microbiota in health and disease: unveiling the relationship","volume":"13","author":"Afzaal","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib11","doi-asserted-by":"crossref","first-page":"578","DOI":"10.3390\/microorganisms10030578","article-title":"Gut microbiota dysbiosis: triggers, consequences, diagnostic and therapeutic ootions","volume":"10","author":"Hrncir","year":"2022","journal-title":"Microorganisms"},{"key":"10.1016\/j.micpath.2025.107642_bib12","doi-asserted-by":"crossref","DOI":"10.1016\/j.amolm.2023.100029","article-title":"Gut microbiome associated dysbiosis: limited regimens and expanding horizons of phage therapy","volume":"2","author":"Singha","year":"2023","journal-title":"Aspects of Molecular Medicine"},{"key":"10.1016\/j.micpath.2025.107642_bib13","doi-asserted-by":"crossref","first-page":"6506","DOI":"10.1073\/pnas.1711842115","article-title":"The biomass distribution on Earth","volume":"115","author":"Bar-On","year":"2018","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"10.1016\/j.micpath.2025.107642_bib14","series-title":"Bacteriophages as Drivers of Evolution : an Evolutionary Ecological Perspective","author":"Abedon","year":"2022"},{"key":"10.1016\/j.micpath.2025.107642_bib15","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1038\/s41385-019-0250-5","article-title":"New insights into intestinal phages","volume":"13","author":"Sausset","year":"2020","journal-title":"Mucosal Immunol."},{"key":"10.1016\/j.micpath.2025.107642_bib16","doi-asserted-by":"crossref","first-page":"784","DOI":"10.3389\/fendo.2019.00784","article-title":"Gut bacteriophage: current understanding and challenges","volume":"10","author":"Sutton","year":"2019","journal-title":"Front. Endocrinol."},{"key":"10.1016\/j.micpath.2025.107642_bib17","doi-asserted-by":"crossref","DOI":"10.1080\/19490976.2024.2309684","article-title":"A universe of human gut-derived bacterial prophages: unveiling the hidden viral players in intestinal microecology","volume":"16","author":"Pei","year":"2024","journal-title":"Gut Microbes"},{"key":"10.1016\/j.micpath.2025.107642_bib18","doi-asserted-by":"crossref","first-page":"1127","DOI":"10.1038\/s41396-018-0061-9","article-title":"Lysogeny is prevalent and widely distributed in the murine gut microbiota","volume":"12","author":"Kim","year":"2018","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib19","doi-asserted-by":"crossref","first-page":"8344","DOI":"10.1021\/jacs.1c01275","article-title":"A metabolite of Pseudomonas triggers prophage-selective lysogenic to lytic conversion in Staphylococcus aureus","volume":"143","author":"Jancheva","year":"2021","journal-title":"J. Am. Chem. Soc."},{"key":"10.1016\/j.micpath.2025.107642_bib20","doi-asserted-by":"crossref","first-page":"1969","DOI":"10.1007\/s11010-024-05077-y","article-title":"Gut microbiota regulates gut homeostasis, mucosal immunity and influences immune-related diseases","volume":"480","author":"Ding","year":"2025","journal-title":"Mol. Cell. Biochem."},{"key":"10.1016\/j.micpath.2025.107642_bib21","doi-asserted-by":"crossref","DOI":"10.1530\/JOE-22-0111","article-title":"The gut microbiome: a core regulator of metabolism","volume":"256","author":"Fujisaka","year":"2023","journal-title":"J. Endocrinol."},{"key":"10.1016\/j.micpath.2025.107642_bib22","doi-asserted-by":"crossref","first-page":"14","DOI":"10.3390\/microorganisms7010014","article-title":"What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases","volume":"7","author":"Rinninella","year":"2019","journal-title":"Microorganisms"},{"key":"10.1016\/j.micpath.2025.107642_bib23","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0093827","article-title":"Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics","volume":"9","author":"Poretsky","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.micpath.2025.107642_bib24","doi-asserted-by":"crossref","first-page":"569","DOI":"10.1038\/s41419-021-03829-y","article-title":"Recovery of human gut microbiota genomes with third-generation sequencing","volume":"12","author":"Li","year":"2021","journal-title":"Cell Death Dis."},{"key":"10.1016\/j.micpath.2025.107642_bib25","doi-asserted-by":"crossref","DOI":"10.1016\/j.jff.2022.105367","article-title":"Intestinal gas production by the gut microbiota: a review","volume":"100","author":"Mutuyemungu","year":"2023","journal-title":"J. Funct.Foods"},{"key":"10.1016\/j.micpath.2025.107642_bib26","doi-asserted-by":"crossref","first-page":"207","DOI":"10.1126\/science.aat5867","article-title":"Genome hypermobility by lateral transduction","volume":"362","author":"Chen","year":"2018","journal-title":"Science"},{"key":"10.1016\/j.micpath.2025.107642_bib27","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/j.humic.2018.01.001","article-title":"Gut microbiota diversity according to dietary habits and geographical provenance","volume":"7\u20138","author":"Senghor","year":"2018","journal-title":"Human Microbiome Journal"},{"key":"10.1016\/j.micpath.2025.107642_bib28","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-023-41532-4","article-title":"Lifestyle patterns influence the composition of the gut microbiome in a healthy Chinese population","volume":"13","author":"Ren","year":"2023","journal-title":"Sci. Rep."},{"key":"10.1016\/j.micpath.2025.107642_bib29","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1038\/s41579-020-0438-4","article-title":"Gut microbial metabolites as multi-kingdom intermediates","volume":"19","author":"Krautkramer","year":"2021","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib30","doi-asserted-by":"crossref","first-page":"655","DOI":"10.1007\/s00203-014-1005-z","article-title":"Survival, prophage induction, and invasive properties of lysogenic Salmonella Typhimurium exposed to simulated gastrointestinal conditions","volume":"196","author":"Kim","year":"2014","journal-title":"Arch. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib31","doi-asserted-by":"crossref","first-page":"1106","DOI":"10.14336\/AD.2022.0104","article-title":"Functions of gut microbiota metabolites, current status and future perspectives","volume":"13","author":"Liu","year":"2022","journal-title":"Aging Dis"},{"key":"10.1016\/j.micpath.2025.107642_bib32","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1007\/s40588-023-00207-4","article-title":"Gut microbiota resilience mechanisms against pathogen infection and its role in inflammatory bowel disease","volume":"10","author":"Cipelli","year":"2023","journal-title":"Curr. Clin. Microbiol. Rep."},{"key":"10.1016\/j.micpath.2025.107642_bib33","doi-asserted-by":"crossref","DOI":"10.1016\/j.heliyon.2024.e34092","article-title":"Gut-brain axis: a cutting-edge approach to target neurological disorders and potential synbiotic application","volume":"10","author":"Ashique","year":"2024","journal-title":"Heliyon"},{"key":"10.1016\/j.micpath.2025.107642_bib34","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1007\/s40495-024-00357-z","article-title":"Mental health and the microbiome: a review of psychological impacts of gut microflora","volume":"10","author":"Gupt","year":"2024","journal-title":"Current Pharmacology Reports"},{"key":"10.1016\/j.micpath.2025.107642_bib35","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1186\/s12974-019-1434-3","article-title":"Impact of microbiota on central nervous system and neurological diseases: the gut-brain axis","volume":"16","author":"Ma","year":"2019","journal-title":"J. Neuroinflammation"},{"key":"10.1016\/j.micpath.2025.107642_bib36","doi-asserted-by":"crossref","first-page":"813204","DOI":"10.3389\/fmed.2022.813204","article-title":"Guts imbalance imbalances the brain: a review of gut microbiota association with neurological and psychiatric dsorders","volume":"9","author":"Mitrea","year":"2022","journal-title":"Front. Med."},{"key":"10.1016\/j.micpath.2025.107642_bib37","doi-asserted-by":"crossref","first-page":"7551","DOI":"10.3390\/ijms21207551","article-title":"Gut-brain axis: role of gut microbiota on neurological disorders and how probiotics\/prebiotics beneficially modulate microbial and immune pathways to improve brain functions","volume":"21","author":"Suganya","year":"2020","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.micpath.2025.107642_bib38","doi-asserted-by":"crossref","first-page":"1095","DOI":"10.1038\/s41385-022-00564-1","article-title":"Microbiome-based interventions to modulate gut ecology and the immune system","volume":"15","author":"Hitch","year":"2022","journal-title":"Mucosal Immunol."},{"key":"10.1016\/j.micpath.2025.107642_bib39","doi-asserted-by":"crossref","DOI":"10.3389\/fphys.2021.673341","article-title":"Effect of cigarette smoke on gut microbiota: state of knowledge","volume":"12","author":"Gui","year":"2021","journal-title":"Front. Physiol."},{"key":"10.1016\/j.micpath.2025.107642_bib40","doi-asserted-by":"crossref","first-page":"2369","DOI":"10.1056\/NEJMra1600266","article-title":"The human intestinal microbiome in health and disease","volume":"375","author":"Lynch","year":"2016","journal-title":"N. Engl. J. Med."},{"key":"10.1016\/j.micpath.2025.107642_bib41","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.7502","article-title":"Factors affecting the composition of the gut microbiota, and its modulation","volume":"7","author":"Hasan","year":"2019","journal-title":"PeerJ"},{"key":"10.1016\/j.micpath.2025.107642_bib42","doi-asserted-by":"crossref","first-page":"2096","DOI":"10.3390\/nu14102096","article-title":"Prebiotics and the human gut microbiota: from breakdown mechanisms to the impact on metabolic health","volume":"14","author":"Bedu-Ferrari","year":"2022","journal-title":"Nutrients"},{"key":"10.1016\/j.micpath.2025.107642_bib43","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1080\/19490976.2016.1270811","article-title":"Western diets, gut dysbiosis, and metabolic diseases: are they linked?","volume":"8","author":"Martinez","year":"2017","journal-title":"Gut Microbes"},{"key":"10.1016\/j.micpath.2025.107642_bib44","doi-asserted-by":"crossref","first-page":"2287","DOI":"10.3390\/nu11102287","article-title":"Gut microbiota: an important link between Western diet and chronic diseases","volume":"11","author":"Shi","year":"2019","journal-title":"Nutrients"},{"key":"10.1016\/j.micpath.2025.107642_bib45","doi-asserted-by":"crossref","first-page":"2980","DOI":"10.1038\/s41396-020-0726-z","article-title":"Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation","volume":"14","author":"de Sousa","year":"2020","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib46","doi-asserted-by":"crossref","first-page":"410","DOI":"10.1128\/JB.02230-14","article-title":"Impact of spontaneous prophage induction on the fitness of bacterial populations and host-microbe interactions","volume":"197","author":"Nanda","year":"2015","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micpath.2025.107642_bib47","doi-asserted-by":"crossref","first-page":"2744","DOI":"10.1038\/ismej.2016.47","article-title":"Genetic and life-history traits associated with the distribution of prophages in bacteria","volume":"10","author":"Touchon","year":"2016","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib48","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1016\/j.mib.2017.04.010","article-title":"Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer","volume":"38","author":"Touchon","year":"2017","journal-title":"Curr. Opin. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib49","doi-asserted-by":"crossref","DOI":"10.1155\/2016\/3578368","article-title":"Oxidative stress in shiga toxin production by enterohemorrhagic Escherichia coli","volume":"2016","author":"Licznerska","year":"2016","journal-title":"Oxid. Med. Cell. Longev."},{"key":"10.1016\/j.micpath.2025.107642_bib50","doi-asserted-by":"crossref","first-page":"664","DOI":"10.1086\/315239","article-title":"Quinolone antibiotics Induce shiga toxin-encoding bacteriophages, toxin production, and death in mice","volume":"181","author":"Zhang","year":"2000","journal-title":"J. Infect. Dis."},{"key":"10.1016\/j.micpath.2025.107642_bib51","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1016\/j.micpath.2009.09.006","article-title":"Differential efficiency of induction of various lambdoid prophages responsible for production of Shiga toxins in response to different induction agents","volume":"47","author":"Lo\u015b","year":"2009","journal-title":"Microb. Pathogen"},{"key":"10.1016\/j.micpath.2025.107642_bib52","doi-asserted-by":"crossref","first-page":"3985","DOI":"10.1128\/IAI.70.8.3985-3993.2002","article-title":"Bacteriophage control of bacterial virulence","volume":"70","author":"Wagner","year":"2002","journal-title":"Infect. Immun."},{"key":"10.1016\/j.micpath.2025.107642_bib53","doi-asserted-by":"crossref","first-page":"8315","DOI":"10.1038\/s41467-024-52450-y","article-title":"Prophage-encoded antibiotic resistance genes are enriched in human-impacted environments","volume":"15","author":"Liao","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.micpath.2025.107642_bib54","doi-asserted-by":"crossref","first-page":"238","DOI":"10.1128\/MMBR.67.2.238-276.2003","article-title":"Prophage genomics","volume":"67","author":"Canchaya","year":"2003","journal-title":"Microbiol. Mol. Biol. Rev."},{"key":"10.1016\/j.micpath.2025.107642_bib55","doi-asserted-by":"crossref","DOI":"10.1038\/ncomms13333","article-title":"Bacterial viruses enable their host to acquire antibiotic resistance genes from neighbouring cells","volume":"7","author":"Haaber","year":"2016","journal-title":"Nat. Commun."},{"key":"10.1016\/j.micpath.2025.107642_bib56","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1011363","article-title":"Induction mechanisms and strategies underlying interprophage competition during polylysogeny","volume":"19","author":"Silpe","year":"2023","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.micpath.2025.107642_bib57","article-title":"Prophage induction mediated by quorum sensing signals alters soil bacterial community structure","author":"Liang","year":"2019","journal-title":"bioRxiv"},{"key":"10.1016\/j.micpath.2025.107642_bib58","doi-asserted-by":"crossref","first-page":"1260","DOI":"10.1016\/j.cell.2017.10.045","article-title":"Contemporary phage biology: from classic models to new insights","volume":"172","author":"Ofir","year":"2018","journal-title":"Cell"},{"key":"10.1016\/j.micpath.2025.107642_bib59","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pgen.1002149","article-title":"Bacteriophage crosstalk: coordination of prophage induction by trans-acting antirepressors","volume":"7","author":"Lemire","year":"2011","journal-title":"PLoS Genet."},{"key":"10.1016\/j.micpath.2025.107642_bib60","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0156010","article-title":"Identification and initial characterization of prophages in Vibrio campbellii","volume":"11","author":"Lorenz","year":"2016","journal-title":"PLoS One"},{"key":"10.1016\/j.micpath.2025.107642_bib61","doi-asserted-by":"crossref","DOI":"10.1016\/j.mehy.2022.110980","article-title":"Prophage induction therapy: activation of the lytic phase in prophages for the elimination of pathogenic bacteria","volume":"169","author":"Lakshminarasimhan","year":"2022","journal-title":"Med. Hypotheses"},{"key":"10.1016\/j.micpath.2025.107642_bib62","doi-asserted-by":"crossref","first-page":"310","DOI":"10.1016\/j.virol.2015.02.010","article-title":"Bacteriophage lambda: early pioneer and still relevant","volume":"479\u2013480","author":"Casjens","year":"2015","journal-title":"Virology"},{"key":"10.1016\/j.micpath.2025.107642_bib63","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1016\/j.cels.2020.02.006","article-title":"Engineered fluorescent E. coli lysogens allow live-cell imaging of functional prophage induction triggered inside macrophages","volume":"10","author":"Bodner","year":"2020","journal-title":"Cell Syst."},{"key":"10.1016\/j.micpath.2025.107642_bib64","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1186\/s12866-018-1229-1","article-title":"Spontaneously induced prophages are abundant in a naturally evolved bacterial starter culture and deliver competitive advantage to the host","volume":"18","author":"Alexeeva","year":"2018","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib65","doi-asserted-by":"crossref","first-page":"2415","DOI":"10.1038\/s41396-023-01547-1","article-title":"Widespread and largely unknown prophage activity, diversity, and function in two genera of wheat phyllosphere bacteria","volume":"17","author":"Dougherty","year":"2023","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib66","doi-asserted-by":"crossref","DOI":"10.1016\/j.jtbi.2019.110005","article-title":"Optimality of the spontaneous prophage induction rate","volume":"483","author":"Cortes","year":"2019","journal-title":"J. Theor. Biol."},{"key":"10.1016\/j.micpath.2025.107642_bib67","doi-asserted-by":"crossref","first-page":"636","DOI":"10.1111\/mmi.13147","article-title":"Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations","volume":"98","author":"Helfrich","year":"2015","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib68","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.02375-22","article-title":"Spontaneous prophage induction contributes to the production of membrane vesicles by the Gram-positive bacterium Lacticaseibacillus casei BL23","volume":"13","author":"da Silva Barreira","year":"2022","journal-title":"mBio"},{"key":"10.1016\/j.micpath.2025.107642_bib69","first-page":"e00189","article-title":"Phage morons play important roles in controlling Pseudomonas aeruginosa phenotypes","author":"Tsao","year":"2018","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micpath.2025.107642_bib70","article-title":"The effect of a spontaneous induction prophage, phi 458, on biofilm formation and virulence in avian pathogenic Escherichia coli","volume":"13","author":"Li","year":"2022","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib71","doi-asserted-by":"crossref","first-page":"29","DOI":"10.1111\/j.1365-2958.2008.06119.x","article-title":"Host responses influence on the induction of lambda prophage","volume":"68","author":"Rokney","year":"2008","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib72","doi-asserted-by":"crossref","first-page":"3115","DOI":"10.1128\/JB.01857-06","article-title":"Effect of salt shock on stability of \u03bbimm434 lysogens","volume":"189","author":"Shkilnyj","year":"2007","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micpath.2025.107642_bib73","doi-asserted-by":"crossref","first-page":"2008","DOI":"10.1099\/jgv.0.000504","article-title":"Two novel temperate bacteriophages co-existing in Aeromonas sp. ARM81 - characterization of their genomes, proteomes and DNA methyltransferases","volume":"97","author":"Dziewit","year":"2016","journal-title":"J. Gen. Virol."},{"key":"10.1016\/j.micpath.2025.107642_bib74","doi-asserted-by":"crossref","first-page":"625","DOI":"10.1038\/s41586-023-06376-y","article-title":"Small protein modules dictate prophage fates during polylysogeny","volume":"620","author":"Silpe","year":"2023","journal-title":"Nature"},{"key":"10.1016\/j.micpath.2025.107642_bib75","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2217813119","article-title":"Natural and synthetic inhibitors of a phage-encoded quorum-sensing receptor affect phage-host dynamics in mixed bacterial communities","volume":"119","author":"Silpe","year":"2022","journal-title":"Proc. Natl. Acad. Sci. USA."},{"key":"10.1016\/j.micpath.2025.107642_bib76","doi-asserted-by":"crossref","first-page":"549","DOI":"10.1089\/crispr.2021.0026","article-title":"Induction and elimination of prophages using CRISPR interference","volume":"4","author":"Cornuault","year":"2021","journal-title":"CRISPR J."},{"key":"10.1016\/j.micpath.2025.107642_bib77","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.mimet.2016.03.014","article-title":"Multiplex real-time PCR assay for the detection of extended-spectrum \u00ae-lactamase and carbapenemase genes using melting curve analysis","volume":"124","author":"Singh","year":"2016","journal-title":"J. Microbiol. Method."},{"key":"10.1016\/j.micpath.2025.107642_bib78","doi-asserted-by":"crossref","first-page":"2304","DOI":"10.1128\/AAC.02515-13","article-title":"Phenethyl isothiocyanate inhibits shiga toxin production in enterohemorrhagic Escherichia coli by stringent response induction","volume":"58","author":"Nowicki","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.micpath.2025.107642_bib79","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1016\/j.chom.2019.01.012","article-title":"Sugar and fatty acids ack-celerate prophage induction","volume":"25","author":"Chatterjee","year":"2019","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.micpath.2025.107642_bib80","doi-asserted-by":"crossref","first-page":"1023","DOI":"10.1038\/s41564-018-0210-y","article-title":"Murine colitis reveals a disease-associated bacteriophage community","volume":"3","author":"Duerkop","year":"2018","journal-title":"Nat. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib81","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1016\/j.chom.2018.11.016","article-title":"Dietary fructose and microbiota-derived short-chain fatty acids promote bacteriophage production in the gut symbiont Lactobacillus reuteri","volume":"25","author":"Oh","year":"2019","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.micpath.2025.107642_bib82","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1016\/j.cell.2018.10.059","article-title":"A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision","volume":"176","author":"Silpe","year":"2019","journal-title":"Cell"},{"key":"10.1016\/j.micpath.2025.107642_bib83","doi-asserted-by":"crossref","first-page":"7142","DOI":"10.1128\/AEM.00950-09","article-title":"Acyl-homoserine lactones can induce virus production in lysogenic bacteria: an alternative paradigm for prophage induction","volume":"75","author":"Ghosh","year":"2009","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib84","doi-asserted-by":"crossref","first-page":"5046","DOI":"10.1016\/j.cub.2021.08.073","article-title":"Regulation of prophage induction and lysogenization by phage communication systems","volume":"31","author":"Bruce","year":"2021","journal-title":"Curr. Biol."},{"key":"10.1016\/j.micpath.2025.107642_bib85","doi-asserted-by":"crossref","first-page":"e00638","DOI":"10.1128\/mBio.00638-19","article-title":"Phage-encoded LuxR-type receptors responsive to host-produced bacterial quorum-sensing autoinducers","volume":"10","author":"Silpe","year":"2019","journal-title":"mBio"},{"key":"10.1016\/j.micpath.2025.107642_bib86","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.01884-19","article-title":"Quorum sensing and metabolic state of the host control lysogeny-lysis switch of bacteriophage T1","volume":"10","author":"Laganenka","year":"2019","journal-title":"mBio"},{"key":"10.1016\/j.micpath.2025.107642_bib87","doi-asserted-by":"crossref","first-page":"1731","DOI":"10.1038\/s41396-020-0641-3","article-title":"High cell densities favor lysogeny: induction of an H20 prophage is repressed by quorum sensing and enhances biofilm formation in Vibrio anguillarum","volume":"14","author":"Tan","year":"2020","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib88","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1004653","article-title":"Phage-mediated dispersal of biofilm and distribution of bacterial virulence genes is induced by quorum sensing","volume":"11","author":"Rossmann","year":"2015","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.micpath.2025.107642_bib89","doi-asserted-by":"crossref","first-page":"7244","DOI":"10.1038\/s41467-024-51617-x","article-title":"Control of lysogeny and antiphage defense by a prophage-encoded kinase-phosphatase module","volume":"15","author":"Guo","year":"2024","journal-title":"Nat. Commun."},{"key":"10.1016\/j.micpath.2025.107642_bib90","doi-asserted-by":"crossref","first-page":"494","DOI":"10.1111\/mmi.14983","article-title":"Signals triggering prophage induction in the gut microbiota","volume":"118","author":"Henrot","year":"2022","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib91","doi-asserted-by":"crossref","first-page":"721","DOI":"10.1080\/19490976.2019.1701353","article-title":"Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome","volume":"11","author":"Boling","year":"2020","journal-title":"Gut Microbes"},{"key":"10.1016\/j.micpath.2025.107642_bib92","doi-asserted-by":"crossref","first-page":"79","DOI":"10.1038\/s41522-023-00445-w","article-title":"Dietary D-xylose promotes intestinal health by inducing phage production in Escherichia coli","volume":"9","author":"Hu","year":"2023","journal-title":"NPJ Biofilms Microbiom."},{"key":"10.1016\/j.micpath.2025.107642_bib93","first-page":"126","article-title":"Phage induction in different contexts","volume":"17","author":"Du Toit","year":"2019","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib94","article-title":"Impact of antibiotics on the human microbiome and consequences for host health","volume":"11","author":"Patangia","year":"2022","journal-title":"Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib95","doi-asserted-by":"crossref","DOI":"10.1016\/j.watres.2024.122200","article-title":"Prophage induction by non-antibiotic compounds promotes transformation of released antibiotic resistance genes from cell lysis","volume":"263","author":"Lu","year":"2024","journal-title":"Water Res."},{"key":"10.1016\/j.micpath.2025.107642_bib96","doi-asserted-by":"crossref","first-page":"455","DOI":"10.3390\/v13030455","article-title":"Common oral medications lead to prophage induction in bacterial isolates from the human gut","volume":"13","author":"Sutcliffe","year":"2021","journal-title":"Viruses"},{"key":"10.1016\/j.micpath.2025.107642_bib97","doi-asserted-by":"crossref","first-page":"1467","DOI":"10.1038\/s41396-023-01463-4","article-title":"Conjugative transfer of streptococcal prophages harboring antibiotic resistance and virulence genes","volume":"17","author":"Huang","year":"2023","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib98","doi-asserted-by":"crossref","first-page":"e00260","DOI":"10.1128\/mBio.00260-11","article-title":"Antibiotics in feed induce prophages in swine fecal microbiomes","volume":"2","author":"Allen","year":"2011","journal-title":"mBio"},{"key":"10.1016\/j.micpath.2025.107642_bib99","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-024-62843-0","article-title":"Bile promotes Lactobacillus johnsonii N6.2 extracellular vesicle production with conserved immunomodulatory properties","volume":"14","author":"Beliakoff","year":"2024","journal-title":"Sci. Rep."},{"key":"10.1016\/j.micpath.2025.107642_bib100","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2024.1374708","article-title":"Novel insights into phage biology of the pathogen Clostridioides difficile based on the active virome","volume":"15","author":"Sch\u00fcler","year":"2024","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib101","doi-asserted-by":"crossref","first-page":"107","DOI":"10.1186\/s12864-021-08167-z","article-title":"Genomewide transcriptional response of Escherichia coli O157:H7 to norepinephrine","volume":"23","author":"Sharma","year":"2022","journal-title":"BMC Genom."},{"key":"10.1016\/j.micpath.2025.107642_bib102","doi-asserted-by":"crossref","first-page":"e00353","DOI":"10.1128\/JB.00353-19","article-title":"A putative microcin amplifies shiga toxin 2a production of Escherichia coli O157:H7","volume":"202","author":"Mosso","year":"2019","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micpath.2025.107642_bib103","doi-asserted-by":"crossref","first-page":"7079","DOI":"10.1128\/IAI.71.12.7079-7086.2003","article-title":"Prophage induction and expression of prophage-encoded virulence factors in group A Streptococcus serotype M3 strain MGAS315","volume":"71","author":"Banks","year":"2003","journal-title":"Infect. Immun."},{"key":"10.1016\/j.micpath.2025.107642_bib104","doi-asserted-by":"crossref","first-page":"315","DOI":"10.1038\/s41586-022-04444-3","article-title":"The bacterial toxin colibactin triggers prophage induction","volume":"603","author":"Silpe","year":"2022","journal-title":"Nature"},{"key":"10.1016\/j.micpath.2025.107642_bib105","doi-asserted-by":"crossref","DOI":"10.1128\/msphere.00589-20","article-title":"The genotoxin colibactin shapes gut microbiota in mice","volume":"5","author":"Tronnet","year":"2020","journal-title":"mSphere"},{"key":"10.1016\/j.micpath.2025.107642_bib106","doi-asserted-by":"crossref","first-page":"e01874","DOI":"10.1128\/mBio.01874-17","article-title":"Bacteriophage transcytosis provides a mechanism to cross epithelial cell layers","volume":"8","author":"Nguyen","year":"2017","journal-title":"mBio"},{"key":"10.1016\/j.micpath.2025.107642_bib107","doi-asserted-by":"crossref","first-page":"889","DOI":"10.1038\/s41423-020-00532-4","article-title":"Phages and their potential to modulate the microbiome and immunity","volume":"18","author":"Federici","year":"2020","journal-title":"Cell. Mol. Immunol."},{"key":"10.1016\/j.micpath.2025.107642_bib108","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1016\/j.coviro.2019.06.003","article-title":"Virome-host interactions in intestinal health and disease","volume":"37","author":"Seo","year":"2019","journal-title":"Curr. Opin. virol."},{"key":"10.1016\/j.micpath.2025.107642_bib109","doi-asserted-by":"crossref","first-page":"285","DOI":"10.1016\/j.chom.2019.01.008","article-title":"Expansion of bacteriophages Is linked to aggravated intestinal inflammation and colitis","volume":"25","author":"Gogokhia","year":"2019","journal-title":"Cell Host Microb"},{"key":"10.1016\/j.micpath.2025.107642_bib110","doi-asserted-by":"crossref","first-page":"e00013","DOI":"10.1128\/msystems.00013-20","article-title":"Stable neutralization of a virulence factor in bacteria using temperate phage in the mammalian gut","volume":"5","author":"Hsu","year":"2020","journal-title":"mSystems"},{"key":"10.1016\/j.micpath.2025.107642_bib111","first-page":"81","article-title":"Immunotherapy in colorectal cancer: potential of fecal transplant and Microbiota-augmented clinical trials, Curr. Colorectal","volume":"16","author":"Park","year":"2020","journal-title":"Cancer Rep"},{"key":"10.1016\/j.micpath.2025.107642_bib112","doi-asserted-by":"crossref","DOI":"10.1093\/ofid\/ofaa114","article-title":"The efficacy and safety of fecal microbiota transplant for recurrent Clostridium difficile infection: current understanding and gap analysis","volume":"7","author":"Wilcox","year":"2020","journal-title":"Open Forum Infect. Dis."},{"key":"10.1016\/j.micpath.2025.107642_bib113","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1080\/19490976.2020.1854640","article-title":"Efficacy and safety of fecal microbiota transplantation for the treatment of diseases other than Clostridium difficile infection: a systematic review and meta-analysis","volume":"12","author":"Green","year":"2020","journal-title":"Gut Microbes"},{"key":"10.1016\/j.micpath.2025.107642_bib114","doi-asserted-by":"crossref","first-page":"2122","DOI":"10.1136\/gutjnl-2019-320005","article-title":"Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model","volume":"69","author":"Rasmussen","year":"2020","journal-title":"Gut"},{"key":"10.1016\/j.micpath.2025.107642_bib115","doi-asserted-by":"crossref","first-page":"686","DOI":"10.1038\/s41396-021-01107-5","article-title":"Fecal filtrate transplantation protects against necrotizing enterocolitis","volume":"16","author":"Brunse","year":"2022","journal-title":"ISME J."},{"key":"10.1016\/j.micpath.2025.107642_bib116","doi-asserted-by":"crossref","first-page":"799","DOI":"10.1053\/j.gastro.2016.11.010","article-title":"Efficacy of sterile fecal filtrate transfer for treating patients with Clostridium difficile infection","volume":"152","author":"Ott","year":"2017","journal-title":"Gastroenterology"},{"key":"10.1016\/j.micpath.2025.107642_bib117","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.785634","article-title":"Prophage activation in the intestine: insights into functions and possible applications","volume":"12","author":"Hu","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib118","article-title":"Prophage rates in the human microbiome vary by body site and host health","author":"Inglis","year":"2023","journal-title":"bioRxiv"},{"key":"10.1016\/j.micpath.2025.107642_bib119","doi-asserted-by":"crossref","first-page":"1671","DOI":"10.3390\/microorganisms10081671","article-title":"How metagenomics has transformed our understanding of bacteriophages in microbiome research","volume":"10","author":"Inglis","year":"2022","journal-title":"Microorganisms"},{"key":"10.1016\/j.micpath.2025.107642_bib120","doi-asserted-by":"crossref","DOI":"10.1038\/npjbiofilms.2016.10","article-title":"Piggyback-the-Winner in host-associated microbial communities","volume":"2","author":"Silveira","year":"2016","journal-title":"NPJ Biofilms Microbiom."},{"key":"10.1016\/j.micpath.2025.107642_bib121","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1186\/1471-2334-14-471","article-title":"Association between cigarette smoking and the vaginal microbiota: a pilot study","volume":"14","author":"Brotman","year":"2014","journal-title":"BMC Infect. Dis."},{"key":"10.1016\/j.micpath.2025.107642_bib122","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1016\/S1383-5718(00)00003-6","article-title":"Induction of vaginal Lactobacillus phages by the cigarette smoke chemical benzo[a]pyrene diol epoxide","volume":"466","author":"Pavlova","year":"2000","journal-title":"Mutat. Res. Genet. Toxicol. Environ. Mutagen"},{"key":"10.1016\/j.micpath.2025.107642_bib123","doi-asserted-by":"crossref","first-page":"4550","DOI":"10.1016\/j.watres.2010.04.040","article-title":"Various physico-chemical stress factors cause prophage induction in Nitrosospira multiformis 25196- an ammonia oxidizing bacteria","volume":"44","author":"Choi","year":"2010","journal-title":"Water Res."},{"key":"10.1016\/j.micpath.2025.107642_bib124","doi-asserted-by":"crossref","first-page":"e00189","DOI":"10.1128\/JB.00189-18","article-title":"Phage morons play an important role in Pseudomonas aeruginosa phenotypes","volume":"200","author":"Tsao","year":"2018","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micpath.2025.107642_bib125","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1007\/PL00006794","article-title":"The clinically isolated FIZ15 bacteriophage causes lysogenic conversion in Pseudomonas aeruginosa PAO1","volume":"38","author":"Vaca-Pacheco","year":"1999","journal-title":"Curr. Microbiol."},{"key":"10.1016\/j.micpath.2025.107642_bib126","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1165\/rcmb.2004-0352OC","article-title":"Identification of DNA markers for a transmissible Pseudomonas aeruginosa cystic fibrosis strain","volume":"33","author":"Lewis","year":"2005","journal-title":"Am. J. Respir. Cell Mol. Biol."},{"key":"10.1016\/j.micpath.2025.107642_bib127","doi-asserted-by":"crossref","first-page":"12","DOI":"10.1101\/gr.086082.108","article-title":"Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa","volume":"19","author":"Winstanley","year":"2009","journal-title":"Genome Res."},{"key":"10.1016\/j.micpath.2025.107642_bib128","doi-asserted-by":"crossref","first-page":"1910","DOI":"10.1126\/science.272.5270.1910","article-title":"Lysogenic conversion by a filamentous phage encoding cholera toxin","volume":"272","author":"Waldor","year":"1996","journal-title":"Science"},{"key":"10.1016\/j.micpath.2025.107642_bib129","doi-asserted-by":"crossref","first-page":"586","DOI":"10.1128\/jvi.3.6.586-598.1969","article-title":"Genetic analysis of tox+ and tox- bacteriophages of Corynebacterium diphtheriae","volume":"3","author":"Holmes","year":"1969","journal-title":"J. Virol."},{"key":"10.1016\/j.micpath.2025.107642_bib130","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1038\/ncomms1146","article-title":"Cryptic prophages help bacteria cope with adverse environments","volume":"1","author":"Wang","year":"2010","journal-title":"Nat. Commun."},{"key":"10.1016\/j.micpath.2025.107642_bib131","first-page":"mgen000482","article-title":"Cryptic prophages within a Streptococcus pyogenes genotype emm 4 lineage","volume":"7","author":"Remmington","year":"2021","journal-title":"Microb. Genom."}],"container-title":["Microbial Pathogenesis"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401025003675?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0882401025003675?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,1,23]],"date-time":"2026-01-23T21:10:37Z","timestamp":1769202637000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0882401025003675"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,7]]},"references-count":131,"alternative-id":["S0882401025003675"],"URL":"https:\/\/doi.org\/10.1016\/j.micpath.2025.107642","relation":{},"ISSN":["0882-4010"],"issn-type":[{"value":"0882-4010","type":"print"}],"subject":[],"published":{"date-parts":[[2025,7]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Impact of prophages on gut microbiota and disease associations","name":"articletitle","label":"Article Title"},{"value":"Microbial Pathogenesis","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.micpath.2025.107642","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Ltd. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"107642"}}