{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,17]],"date-time":"2026-10-17T10:41:38Z","timestamp":1792233698222,"version":"4.4.0"},"reference-count":68,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2027,1,1]],"date-time":"2027-01-01T00:00:00Z","timestamp":1798761600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T00:00:00Z","timestamp":1789516800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100005196","name":"Chinese Academy of Agricultural Sciences","doi-asserted-by":"publisher","award":["CAAS-CSCB-202401"],"award-info":[{"award-number":["CAAS-CSCB-202401"]}],"id":[{"id":"10.13039\/501100005196","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Microbiological Research"],"published-print":{"date-parts":[[2027,1]]},"DOI":"10.1016\/j.micres.2026.128738","type":"journal-article","created":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T06:31:57Z","timestamp":1789540317000},"page":"128738","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Multi-omics insights reveal a divergent type III secretion system-associated secretome in plant growth-promoting rhizobacterial Pseudomonas fluorescens"],"prefix":"10.1016","volume":"314","author":[{"given":"Jing","family":"Wang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiawei","family":"Hou","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yuan","family":"Luo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jun-Zhou","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Baolei","family":"Jia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6554-009X","authenticated-orcid":false,"given":"Hai-Lei","family":"Wei","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.micres.2026.128738_bib1","doi-asserted-by":"crossref","first-page":"300","DOI":"10.1016\/j.resmic.2014.03.008","article-title":"Prevalence of type III secretion system in effective biocontrol pseudomonads","volume":"165","author":"Almario","year":"2014","journal-title":"Res. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib2","doi-asserted-by":"crossref","DOI":"10.1371\/annotation\/78659a32-7869-4b14-91a6-b301a588d937","article-title":"Sequence-based prediction of type III secreted proteins","volume":"5","author":"Arnold","year":"2009","journal-title":"PLoS. Pathog."},{"key":"10.1016\/j.micres.2026.128738_bib3","doi-asserted-by":"crossref","first-page":"18478","DOI":"10.1073\/pnas.1318972110","article-title":"Cyclic diguanosine monophosphate represses bacterial flagella synthesis by interacting with the Walker A motif of the enhancer-binding protein FleQ","volume":"110","author":"Baraquet","year":"2013","journal-title":"Proc. Natl. Acad. Sci."},{"key":"10.1016\/j.micres.2026.128738_bib4","doi-asserted-by":"crossref","first-page":"377","DOI":"10.1111\/1758-2229.12039","article-title":"Characterization of the SPI-1 and Rsp type three secretion systems in Pseudomonas fluorescens F113","volume":"5","author":"Barret","year":"2013","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.micres.2026.128738_bib5","doi-asserted-by":"crossref","DOI":"10.1093\/bioinformatics\/btae370","article-title":"RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments","volume":"40","author":"Bittrich","year":"2024","journal-title":"Bioinformatics"},{"key":"10.1016\/j.micres.2026.128738_bib6","doi-asserted-by":"crossref","first-page":"e01727","DOI":"10.1128\/mBio.01727-14","article-title":"A horizontally acquired transcription factor coordinates Salmonella adaptations to host microenvironments","volume":"5","author":"Brown","year":"2014","journal-title":"mBio"},{"key":"10.1016\/j.micres.2026.128738_bib7","doi-asserted-by":"crossref","first-page":"1003","DOI":"10.1016\/j.jmb.2006.06.049","article-title":"Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes","volume":"361","author":"Burroughs","year":"2006","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.micres.2026.128738_bib8","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1046\/j.1364-3703.2002.00128.x","article-title":"Identification of regulators of hrp\/hop genes of Erwinia carotovora ssp. carotovora and characterization of HrpLEcc (SigmaLEcc), an alternative sigma factor","volume":"3","author":"Chatterjee","year":"2002","journal-title":"Mol. Plant. Pathol."},{"key":"10.1016\/j.micres.2026.128738_bib9","doi-asserted-by":"crossref","first-page":"D1522","DOI":"10.1093\/nar\/gkab1081","article-title":"iProX in 2021: connecting proteomics data sharing with big data","volume":"50","author":"Chen","year":"2022","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.micres.2026.128738_bib10","doi-asserted-by":"crossref","first-page":"2975","DOI":"10.1073\/pnas.1013031108","article-title":"Genetic disassembly and combinatorial reassembly identify a minimal functional repertoire of type III effectors in Pseudomonas syringae","volume":"108","author":"Cunnac","year":"2011","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.micres.2026.128738_bib11","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1111\/j.1758-2229.2010.00209.x","article-title":"Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis","volume":"3","author":"Cusano","year":"2011","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.micres.2026.128738_bib12","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1038\/nrmicro.2017.20","article-title":"Assembly, structure, function and regulation of type III secretion systems","volume":"15","author":"Deng","year":"2017","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib13","article-title":"BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors","volume":"2015","author":"Dong","year":"2015","journal-title":"Database (Oxf. )"},{"key":"10.1016\/j.micres.2026.128738_bib14","article-title":"Using weakly conserved motifs hidden in secretion signals to identify type-III effectors from bacterial pathogen genomes","volume":"8","author":"Dong","year":"2013","journal-title":"PLoS. One"},{"key":"10.1016\/j.micres.2026.128738_bib15","doi-asserted-by":"crossref","first-page":"D669","DOI":"10.1093\/nar\/gkv1269","article-title":"EffectiveDB\u2014updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems","volume":"44","author":"Eichinger","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.micres.2026.128738_bib16","doi-asserted-by":"crossref","first-page":"2275","DOI":"10.1073\/pnas.032514099","article-title":"Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor","volume":"99","author":"Fouts","year":"2002","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.micres.2026.128738_bib17","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1094\/MPMI-22-1-0096","article-title":"Identification of novel type III secretion effectors in Xanthomonas oryzae pv. oryzae","volume":"22","author":"Furutani","year":"2009","journal-title":"Mol. Plant. Microbe Interact."},{"key":"10.1016\/j.micres.2026.128738_bib18","doi-asserted-by":"crossref","first-page":"1306","DOI":"10.1016\/j.cell.2018.01.034","article-title":"Protein-injection machines in bacteria","volume":"172","author":"Gal\u00e1n","year":"2018","journal-title":"Cell"},{"key":"10.1016\/j.micres.2026.128738_bib19","doi-asserted-by":"crossref","first-page":"1017","DOI":"10.1093\/bioinformatics\/btr064","article-title":"FIMO: scanning for occurrences of a given motif","volume":"27","author":"Grant","year":"2011","journal-title":"Bioinformatics"},{"key":"10.1016\/j.micres.2026.128738_bib20","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2024.1355750","article-title":"Secretory molecules from secretion systems fine-tune the host-beneficial bacteria (PGPRs) interaction","volume":"15","author":"Gupta","year":"2024","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib21","doi-asserted-by":"crossref","first-page":"3879","DOI":"10.1111\/1462-2920.13755","article-title":"A global survey of bacterial type III secretion systems and their effectors","volume":"19","author":"Hu","year":"2017","journal-title":"Environ. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib22","doi-asserted-by":"crossref","first-page":"4859","DOI":"10.1128\/jb.175.15.4859-4869.1993","article-title":"Molecular analysis of avirulence gene avrRpt2 and identification of a putative regulatory sequence common to all known Pseudomonas syringae avirulence genes","volume":"175","author":"Innes","year":"1993","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib23","doi-asserted-by":"crossref","first-page":"8477","DOI":"10.1128\/JB.187.24.8477-8488.2005","article-title":"Genetic characterization of Pseudomonas fluorescens SBW25 rsp gene expression in the phytosphere and in vitro","volume":"187","author":"Jackson","year":"2005","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib24","doi-asserted-by":"crossref","DOI":"10.1016\/j.micpath.2025.107790","article-title":"Bacterial protein secretion systems: Mechanisms, functions, and roles in virulence","volume":"206","author":"Jamali","year":"2025","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.micres.2026.128738_bib25","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1010017","article-title":"Pseudomonas syringae effector HopZ3 suppresses the bacterial AvrPto1-tomato PTO immune complex via acetylation","volume":"17","author":"Jele\u0144ska","year":"2021","journal-title":"PLoS. Pathog."},{"key":"10.1016\/j.micres.2026.128738_bib26","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1093\/nar\/28.1.27","article-title":"KEGG: Kyoto Encyclopedia of Genes and Genomes","volume":"28","author":"Kanehisa","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.micres.2026.128738_bib27","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1071\/BI9700585","article-title":"Crown gall of stone fruit ii. Identification and nomenclature of Agrobacterium isolates","volume":"23","author":"Keane","year":"1970","journal-title":"Aust. J. Biol. Sci."},{"key":"10.1016\/j.micres.2026.128738_bib28","first-page":"301","article-title":"Two simple media for the demonstration of pyocyanin and fluorescin","volume":"44","author":"King","year":"1954","journal-title":"J. Lab. Clin. Med."},{"key":"10.1016\/j.micres.2026.128738_bib29","doi-asserted-by":"crossref","first-page":"69","DOI":"10.1016\/j.jare.2020.07.003","article-title":"Halo-tolerant plant growth promoting rhizobacteria for improving productivity and remediation of saline soils","volume":"26","author":"Kumar Arora","year":"2020","journal-title":"J. Adv. Res."},{"key":"10.1016\/j.micres.2026.128738_bib30","doi-asserted-by":"crossref","first-page":"976","DOI":"10.1094\/MPMI-19-0976","article-title":"Genome-wide gene expression analysis of Pseudomonas syringae pv. tomato DC3000 reveals overlapping and distinct pathways regulated by hrpL and hrpRS","volume":"19","author":"Lan","year":"2006","journal-title":"Mol. Plant. Microbe Interact."},{"key":"10.1016\/j.micres.2026.128738_bib31","doi-asserted-by":"crossref","first-page":"9899","DOI":"10.1074\/jbc.M900110200","article-title":"An alternative polyamine biosynthetic pathway is widespread in bacteria and essential for biofilm formation in Vibrio cholerae","volume":"284","author":"Lee","year":"2009","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.micres.2026.128738_bib32","doi-asserted-by":"crossref","first-page":"1190","DOI":"10.3389\/fpls.2015.01190","article-title":"Supramolecular structure and functional analysis of the type III secretion system in Pseudomonas fluorescens 2P24.","volume":"6","author":"Liu","year":"2016","journal-title":"Front. Plant. Sci."},{"key":"10.1016\/j.micres.2026.128738_bib33","doi-asserted-by":"crossref","first-page":"598","DOI":"10.1074\/mcp.M115.051078","article-title":"Comparative secretome analysis of Ralstonia solanacearum type 3 secretion-associated mutants reveals a fine control of effector delivery, essential for bacterial pathogenicity","volume":"15","author":"Lonjon","year":"2016","journal-title":"Mol. Cell. Proteom."},{"key":"10.1016\/j.micres.2026.128738_bib34","doi-asserted-by":"crossref","first-page":"D1211","DOI":"10.1093\/nar\/gky869","article-title":"iProX: an integrated proteome resource","volume":"47","author":"Ma","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.micres.2026.128738_bib35","doi-asserted-by":"crossref","first-page":"1385","DOI":"10.1111\/nph.70479","article-title":"The transcriptome landscape induced by Pseudomonas syringae core effectors reveals new insights into the immune network in Nicotiana benthamiana","volume":"248","author":"Ma","year":"2025","journal-title":"New. Phytol."},{"key":"10.1016\/j.micres.2026.128738_bib36","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1111\/1758-2229.12048","article-title":"Genomic analysis of the biocontrol strain Pseudomonas fluorescens Pf29Arp with evidence of T3SS and T6SS gene expression on plant roots","volume":"5","author":"Marchi","year":"2013","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.micres.2026.128738_bib37","doi-asserted-by":"crossref","first-page":"177","DOI":"10.1128\/JB.00895-10","article-title":"Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96","volume":"193","author":"Mavrodi","year":"2011","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib38","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1111\/j.1364-3703.2011.00738.x","article-title":"Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors","volume":"13","author":"McNally","year":"2012","journal-title":"Mol. Plant. Pathol."},{"key":"10.1016\/j.micres.2026.128738_bib39","doi-asserted-by":"crossref","first-page":"1447","DOI":"10.3390\/microorganisms9071447","article-title":"HrpL regulon of bacterial pathogen of woody host Pseudomonas savastanoi pv. savastanoi NCPPB 3335","volume":"9","author":"Moreno-P\u00e9rez","year":"2021","journal-title":"Microorganisms"},{"key":"10.1016\/j.micres.2026.128738_bib40","doi-asserted-by":"crossref","first-page":"621","DOI":"10.1038\/nmeth.1226","article-title":"Mapping and quantifying mammalian transcriptomes by RNA-Seq","volume":"5","author":"Mortazavi","year":"2008","journal-title":"Nat. Methods"},{"key":"10.1016\/j.micres.2026.128738_bib41","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1003807","article-title":"Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny","volume":"10","author":"Mucyn","year":"2014","journal-title":"PLoS. Pathog."},{"key":"10.1016\/j.micres.2026.128738_bib42","doi-asserted-by":"crossref","first-page":"665","DOI":"10.1094\/MPMI-23-5-0665","article-title":"Positive regulation of the Hrp type III secretion system in Pseudomonas syringae pv. phaseolicola","volume":"23","author":"Ortiz-Mart\u00edn","year":"2010","journal-title":"Mol. Plant. Microbe Interact."},{"key":"10.1016\/j.micres.2026.128738_bib43","doi-asserted-by":"crossref","first-page":"522","DOI":"10.1111\/1758-2229.12650","article-title":"Low-iron conditions induces the hypersensitive reaction and pathogenicity hrp genes expression in Xanthomonas and is involved in modulation of hypersensitive response and virulence","volume":"10","author":"Pandey","year":"2018","journal-title":"Environ. Microbiol. Rep."},{"key":"10.1016\/j.micres.2026.128738_bib44","doi-asserted-by":"crossref","first-page":"789","DOI":"10.1038\/nrmicro3109","article-title":"Going back to the roots: the microbial ecology of the rhizosphere","volume":"11","author":"Philippot","year":"2013","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib45","doi-asserted-by":"crossref","first-page":"999","DOI":"10.1046\/j.1365-2958.2001.02560.x","article-title":"Type III secretion in plant growth-promoting Pseudomonas fluorescens SBW25","volume":"41","author":"Preston","year":"2001","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib46","doi-asserted-by":"crossref","first-page":"991","DOI":"10.1094\/MPMI-18-0991","article-title":"The type III secretion system of biocontrol Pseudomonas fluorescens KD targets the phytopathogenic Chromista Pythium ultimum and promotes cucumber protection","volume":"18","author":"Rezzonico","year":"2005","journal-title":"Mol. Plant. Microbe Interact."},{"key":"10.1016\/j.micres.2026.128738_bib47","doi-asserted-by":"crossref","DOI":"10.1128\/jb.00504-21","article-title":"Development of a highly sensitive luciferase-based reporter system to study two-step protein secretion in Cyanobacteria","volume":"204","author":"Russo","year":"2022","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib48","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1128\/JB.186.2.543-555.2004","article-title":"Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter","volume":"186","author":"Schechter","year":"2004","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib49","doi-asserted-by":"crossref","first-page":"242","DOI":"10.3389\/fpls.2014.00242","article-title":"Differential secretome analysis of Pseudomonas syringae pv. tomato using gel-free MS proteomics","volume":"5","author":"Schumacher","year":"2014","journal-title":"Front. Plant. Sci."},{"key":"10.1016\/j.micres.2026.128738_bib50","doi-asserted-by":"crossref","DOI":"10.1016\/j.plaphy.2023.108290","article-title":"Unveiling the significance of rhizosphere: implications for plant growth, stress response, and sustainable agriculture","volume":"206","author":"Solomon","year":"2024","journal-title":"Plant. Physiol. Biochem."},{"key":"10.1016\/j.micres.2026.128738_bib51","doi-asserted-by":"crossref","first-page":"3124","DOI":"10.1128\/JB.01677-06","article-title":"Cross talk between type III secretion and flagellar assembly systems in Pseudomonas aeruginosa","volume":"189","author":"Soscia","year":"2007","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib52","doi-asserted-by":"crossref","first-page":"2534","DOI":"10.1111\/pce.15245","article-title":"Unravelling the molecular dialogue of beneficial microbe-plant interactions","volume":"48","author":"Srivastava","year":"2025","journal-title":"Plant. Cell. Environ."},{"key":"10.1016\/j.micres.2026.128738_bib53","doi-asserted-by":"crossref","first-page":"166","DOI":"10.1111\/tpj.13741","article-title":"Root transcriptional dynamics induced by beneficial rhizobacteria and microbial immune elicitors reveal signatures of adaptation to mutualists","volume":"93","author":"Stringlis","year":"2018","journal-title":"Plant. J."},{"key":"10.1016\/j.micres.2026.128738_bib54","article-title":"Phenotypic analysis of Arabidopsis mutants: trypan blue stain for fungi, oomycetes, and dead plant cells","volume":"2008","author":"van Wees","year":"2008","journal-title":"CSH Protoc."},{"key":"10.1016\/j.micres.2026.128738_bib55","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1007\/s00572-016-0730-3","article-title":"Pseudomonas fluorescens C7R12 type III secretion system impacts mycorrhization of Medicago truncatula and associated microbial communities","volume":"27","author":"Viollet","year":"2017","journal-title":"Mycorrhiza"},{"key":"10.1016\/j.micres.2026.128738_bib56","doi-asserted-by":"crossref","DOI":"10.1128\/mBio.02273-16","article-title":"Negative autogenous control of the master type III secretion system regulator HrpL in Pseudomonas syringae","volume":"8","author":"Waite","year":"2017","journal-title":"mBio"},{"key":"10.1016\/j.micres.2026.128738_bib57","doi-asserted-by":"crossref","first-page":"752","DOI":"10.1016\/j.chom.2015.05.007","article-title":"Pseudomonas syringae pv. tomato DC3000 type III secretion effector polymutants reveal an interplay between HopAD1 and AvrPtoB","volume":"17","author":"Wei","year":"2015","journal-title":"Cell. Host Microbe"},{"key":"10.1016\/j.micres.2026.128738_bib58","doi-asserted-by":"crossref","first-page":"1779","DOI":"10.1111\/mpp.12655","article-title":"Defining essential processes in plant pathogenesis with Pseudomonas syringae pv. tomato DC3000 disarmed polymutants and a subset of key type III effectors","volume":"19","author":"Wei","year":"2018","journal-title":"Mol. Plant. Pathol."},{"key":"10.1016\/j.micres.2026.128738_bib59","first-page":"80","article-title":"Identification and characterization of biocontrol bacterial strain 2P24 and CPF-10","volume":"34","author":"Wei","year":"2004","journal-title":"Acta Phytophysiol. Sin."},{"key":"10.1016\/j.micres.2026.128738_bib60","doi-asserted-by":"crossref","first-page":"1630","DOI":"10.1016\/j.celrep.2018.04.037","article-title":"Modular study of the type III effector repertoire in Pseudomonas syringae pv. tomato DC3000 reveals a matrix of effector interplay in pathogenesis","volume":"23","author":"Wei","year":"2018","journal-title":"Cell. Rep."},{"key":"10.1016\/j.micres.2026.128738_bib61","doi-asserted-by":"crossref","first-page":"6201","DOI":"10.1128\/jb.177.21.6201-6210.1995","article-title":"hrpL activates Erwinia amylovora hrp gene transcription and is a member of the ECF subfamily of sigma factors","volume":"177","author":"Wei","year":"1995","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib62","doi-asserted-by":"crossref","first-page":"1240","DOI":"10.1111\/mmi.14490","article-title":"A NanoLuc luciferase-based assay enabling the real-time analysis of protein secretion and injection by bacterial type III secretion systems","volume":"113","author":"Westerhausen","year":"2020","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.micres.2026.128738_bib63","doi-asserted-by":"crossref","first-page":"3089","DOI":"10.1128\/jb.176.10.3089-3091.1994","article-title":"A single promoter sequence recognized by a newly identified alternate sigma factor directs expression of pathogenicity and host range determinants in Pseudomonas syringae","volume":"176","author":"Xiao","year":"1994","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.micres.2026.128738_bib64","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1038\/nature20166","article-title":"Bacteria establish an aqueous living space in plants crucial for virulence","volume":"539","author":"Xin","year":"2016","journal-title":"Nature"},{"key":"10.1016\/j.micres.2026.128738_bib65","doi-asserted-by":"crossref","DOI":"10.1002\/imt2.184","article-title":"Visualizing set relationships: EVenn's comprehensive approach to Venn diagrams","volume":"3","author":"Yang","year":"2024","journal-title":"iMeta"},{"key":"10.1016\/j.micres.2026.128738_bib66","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0013472","article-title":"Genome-wide identification of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937","volume":"5","author":"Yang","year":"2010","journal-title":"PLoS. One"},{"key":"10.1016\/j.micres.2026.128738_bib67","doi-asserted-by":"crossref","first-page":"12692","DOI":"10.3390\/ijms222312692","article-title":"The regulatory functions of \u03c354 factor in phytopathogenic bacteria","volume":"22","author":"Yu","year":"2021","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.micres.2026.128738_bib68","doi-asserted-by":"crossref","first-page":"1434","DOI":"10.3389\/fmicb.2016.01434","article-title":"Cross-talk between the Aeromonas hydrophila type III secretion system and lateral flagella system","volume":"7","author":"Zhao","year":"2016","journal-title":"Front. Microbiol."}],"container-title":["Microbiological Research"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0944501326003022?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0944501326003022?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,17]],"date-time":"2026-10-17T09:48:11Z","timestamp":1792230491000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0944501326003022"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2027,1]]},"references-count":68,"alternative-id":["S0944501326003022"],"URL":"https:\/\/doi.org\/10.1016\/j.micres.2026.128738","relation":{},"ISSN":["0944-5013"],"issn-type":[{"value":"0944-5013","type":"print"}],"subject":[],"published":{"date-parts":[[2027,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Multi-omics insights reveal a divergent type III secretion system-associated secretome in plant growth-promoting rhizobacterial Pseudomonas fluorescens","name":"articletitle","label":"Article Title"},{"value":"Microbiological Research","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.micres.2026.128738","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Authors. Published by Elsevier GmbH.","name":"copyright","label":"Copyright"}],"article-number":"128738"}}