{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,23]],"date-time":"2026-10-23T01:24:50Z","timestamp":1792718690189,"version":"4.5.0"},"reference-count":30,"publisher":"Elsevier BV","issue":"3","license":[{"start":{"date-parts":[[2013,9,1]],"date-time":"2013-09-01T00:00:00Z","timestamp":1377993600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2013,9,1]],"date-time":"2013-09-01T00:00:00Z","timestamp":1377993600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Microbiological Methods"],"published-print":{"date-parts":[[2013,9]]},"DOI":"10.1016\/j.mimet.2013.07.021","type":"journal-article","created":{"date-parts":[[2013,8,2]],"date-time":"2013-08-02T21:00:19Z","timestamp":1375477219000},"page":"390-396","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":125,"title":["Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory"],"prefix":"10.1016","volume":"94","author":[{"given":"St\u00e9phanie","family":"Suarez","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Agn\u00e8s","family":"Ferroni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Aur\u00e9lie","family":"Lotz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Keith A.","family":"Jolley","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Philippe","family":"Gu\u00e9rin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julie","family":"Leto","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Brunhilde","family":"Dauphin","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Anne","family":"Jamet","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin C.J.","family":"Maiden","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xavier","family":"Nassif","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean","family":"Armengaud","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.mimet.2013.07.021_bb0005","doi-asserted-by":"crossref","first-page":"630","DOI":"10.1002\/(SICI)1097-0231(19980529)12:10<630::AID-RCM206>3.0.CO;2-0","article-title":"Fingerprint matching of E. coli strains with matrix-assisted laser desorption\/ionization time-of-flight mass spectrometry of whole cells using a modified correlation approach","volume":"12","author":"Arnold","year":"1998","journal-title":"Rapid Commun. Mass Spectrom."},{"key":"10.1016\/j.mimet.2013.07.021_bb0010","doi-asserted-by":"crossref","first-page":"1570","DOI":"10.1099\/mic.0.056077-0","article-title":"A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria","volume":"158","author":"Bennett","year":"2012","journal-title":"Microbiology"},{"key":"10.1016\/j.mimet.2013.07.021_bb0015","doi-asserted-by":"crossref","first-page":"2156","DOI":"10.1128\/JCM.02405-06","article-title":"Rapid identification of Staphylococci isolated in clinical microbiology laboratories by matrix-assisted laser desorption ionization\u2013time of flight mass spectrometry","volume":"45","author":"Carbonnelle","year":"2007","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.mimet.2013.07.021_bb0020","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1111\/j.1462-2920.2012.02812.x","article-title":"Shotgun nanoLC-MS\/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus","volume":"15","author":"Christie-Oleza","year":"2013","journal-title":"Environ. Microbiol."},{"issue":"M111","key":"10.1016\/j.mimet.2013.07.021_bb0025","first-page":"013102","article-title":"Restricting fermentative potential by proteome remodeling: an adaptive strategy evidenced in Bacillus cereus","volume":"11","author":"Clair","year":"2012","journal-title":"Mol. Cell. Proteomics"},{"key":"10.1016\/j.mimet.2013.07.021_bb0030","doi-asserted-by":"crossref","first-page":"e1000434","DOI":"10.1371\/journal.pgen.1000434","article-title":"Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti","volume":"5","author":"de Groot","year":"2009","journal-title":"PLoS Genet."},{"key":"10.1016\/j.mimet.2013.07.021_bb0035","doi-asserted-by":"crossref","first-page":"3361","DOI":"10.1128\/JCM.00569-08","article-title":"Matrix-assisted laser desorption ionization\u2013time of flight mass spectrometry for identification of nonfermenting gram-negative bacilli isolated from cystic fibrosis patients","volume":"46","author":"Degand","year":"2008","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.mimet.2013.07.021_bb0040","doi-asserted-by":"crossref","first-page":"7455","DOI":"10.1021\/ac051419g","article-title":"Top-down proteomics for rapid identification of intact microorganisms","volume":"77","author":"Demirev","year":"2005","journal-title":"Anal. Chem."},{"key":"10.1016\/j.mimet.2013.07.021_bb0045","doi-asserted-by":"crossref","first-page":"3176","DOI":"10.1099\/mic.0.031534-0","article-title":"Genealogical typing of Neisseria meningitidis","volume":"155","author":"Didelot","year":"2009","journal-title":"Microbiology"},{"key":"10.1016\/j.mimet.2013.07.021_bb0050","doi-asserted-by":"crossref","first-page":"2355","DOI":"10.1021\/ac0349781","article-title":"Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring","volume":"76","author":"Dworzanski","year":"2004","journal-title":"Anal. Chem."},{"key":"10.1016\/j.mimet.2013.07.021_bb0055","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1111\/j.1574-6976.1996.tb00247.x","article-title":"Bacterial aminopeptidases: properties and functions","volume":"18","author":"Gonzales","year":"1996","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.mimet.2013.07.021_bb0065","doi-asserted-by":"crossref","first-page":"1227","DOI":"10.1002\/(SICI)1097-0231(19960731)10:10<1227::AID-RCM659>3.0.CO;2-6","article-title":"Rapid identification of intact whole bacteria based on spectral patterns using matrix-assisted laser desorption\/ionization with time-of-flight mass spectrometry","volume":"10","author":"Holland","year":"1996","journal-title":"Rapid Commun. Mass Spectrom."},{"key":"10.1016\/j.mimet.2013.07.021_bb0060","doi-asserted-by":"crossref","first-page":"3226","DOI":"10.1021\/ac990175v","article-title":"Identification of bacterial proteins observed in MALDI TOF mass spectra from whole cells","volume":"71","author":"Holland","year":"1999","journal-title":"Anal. Chem."},{"key":"10.1016\/j.mimet.2013.07.021_bb0070","doi-asserted-by":"crossref","first-page":"75","DOI":"10.2353\/jmoldx.2009.080079","article-title":"Direct bacterial profiling by matrix-assisted laser desorption-ionization time-of-flight mass spectrometry for identification of pathogenic Neisseria","volume":"11","author":"Ilina","year":"2009","journal-title":"J. Mol. Diagn."},{"key":"10.1016\/j.mimet.2013.07.021_bb0080","doi-asserted-by":"crossref","first-page":"595","DOI":"10.1186\/1471-2105-11-595","article-title":"BIGSdb: scalable analysis of bacterial genome variation at the population level","volume":"11","author":"Jolley","year":"2010","journal-title":"BMC Bioinforma."},{"key":"10.1016\/j.mimet.2013.07.021_bb0075","doi-asserted-by":"crossref","first-page":"1005","DOI":"10.1099\/mic.0.055459-0","article-title":"Ribosomal multilocus sequence typing: universal characterization of bacteria from domain to strain","volume":"158","author":"Jolley","year":"2012","journal-title":"Microbiology"},{"key":"10.1016\/j.mimet.2013.07.021_bb0085","first-page":"2635","article-title":"Heterogeneity of ribosomal proteins among Streptomyces species and its application to identifcation","volume":"135","author":"Kozo","year":"1989","journal-title":"J. Gen. Microbiol."},{"key":"10.1016\/j.mimet.2013.07.021_bb0090","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1002\/mas.10003","article-title":"MALDI-TOF mass spectrometry of bacteria","volume":"20","author":"Lay","year":"2001","journal-title":"Mass Spectrom. Rev."},{"key":"10.1016\/j.mimet.2013.07.021_bb0095","doi-asserted-by":"crossref","first-page":"3140","DOI":"10.1073\/pnas.95.6.3140","article-title":"Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms","volume":"95","author":"Maiden","year":"1998","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.mimet.2013.07.021_bb0100","doi-asserted-by":"crossref","first-page":"631","DOI":"10.1093\/oxfordjournals.molbev.a004122","article-title":"Archaeal phylogeny based on ribosomal proteins","volume":"19","author":"Matte-Tailliez","year":"2002","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.mimet.2013.07.021_bb0105","doi-asserted-by":"crossref","first-page":"3817","DOI":"10.1021\/ac034069b","article-title":"Microorganism identification by matrix-assisted laser\/desorption ionization mass spectrometry and model-derived ribosomal protein biomarkers","volume":"75","author":"Pineda","year":"2003","journal-title":"Anal. Chem."},{"key":"10.1016\/j.mimet.2013.07.021_bb0110","doi-asserted-by":"crossref","first-page":"13953","DOI":"10.1073\/pnas.0804861105","article-title":"Molecular signatures of ribosomal evolution","volume":"105","author":"Roberts","year":"2008","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.mimet.2013.07.021_bb0115","doi-asserted-by":"crossref","first-page":"746","DOI":"10.1021\/ac0008791","article-title":"Characterization of the protein subset desorbed by MALDI from whole bacterial cells","volume":"73","author":"Ryzhov","year":"2001","journal-title":"Anal. Chem."},{"key":"10.1016\/j.mimet.2013.07.021_bb0120","doi-asserted-by":"crossref","first-page":"1611","DOI":"10.1101\/gr.361602","article-title":"The Bioperl toolkit: Perl modules for the life sciences","volume":"12","author":"Stajich","year":"2002","journal-title":"Genome Res."},{"key":"10.1016\/j.mimet.2013.07.021_bb0125","doi-asserted-by":"crossref","first-page":"4818","DOI":"10.1002\/pmic.200402111","article-title":"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption\/ionization mass spectrometry","volume":"5","author":"Suh","year":"2005","journal-title":"Proteomics"},{"key":"10.1016\/j.mimet.2013.07.021_bb0135","doi-asserted-by":"crossref","first-page":"3899","DOI":"10.1021\/pr070218l","article-title":"A simple intact protein analysis by MALDI-MS for characterization of ribosomal proteins of two genome-sequenced lactic acid bacteria and verification of their amino acid sequences","volume":"6","author":"Teramoto","year":"2007","journal-title":"J. Proteome Res."},{"key":"10.1016\/j.mimet.2013.07.021_bb0140","doi-asserted-by":"crossref","first-page":"8712","DOI":"10.1021\/ac701905r","article-title":"Phylogenetic classification of Pseudomonas putida strains by MALDI-MS using ribosomal subunit proteins as biomarkers","volume":"79","author":"Teramoto","year":"2007","journal-title":"Anal. Chem."},{"key":"10.1016\/j.mimet.2013.07.021_bb0130","doi-asserted-by":"crossref","first-page":"348","DOI":"10.1016\/j.jbiosc.2009.04.010","article-title":"Phylogenetic analysis of Rhodococcus erythropolis based on the variation of ribosomal proteins as observed by matrix-assisted laser desorption ionization-mass spectrometry without using genome information","volume":"108","author":"Teramoto","year":"2009","journal-title":"J. Biosci. Bioeng."},{"key":"10.1016\/j.mimet.2013.07.021_bb0145","doi-asserted-by":"crossref","first-page":"342","DOI":"10.1016\/S1044-0305(03)00065-5","article-title":"Experimental factors affecting the quality and reproducibility of MALDI TOF mass spectra obtained from whole bacteria cells","volume":"14","author":"Williams","year":"2003","journal-title":"J. Am. Soc. Mass Spectrom."},{"key":"10.1016\/j.mimet.2013.07.021_bb0150","doi-asserted-by":"crossref","first-page":"e36972","DOI":"10.1371\/journal.pone.0036972","article-title":"Phylogenomics of prokaryotic ribosomal proteins","volume":"7","author":"Yutin","year":"2012","journal-title":"PLoS One"}],"container-title":["Journal of Microbiological Methods"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0167701213002388?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0167701213002388?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,28]],"date-time":"2025-09-28T23:49:29Z","timestamp":1759103369000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0167701213002388"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,9]]},"references-count":30,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2013,9]]}},"alternative-id":["S0167701213002388"],"URL":"https:\/\/doi.org\/10.1016\/j.mimet.2013.07.021","relation":{},"ISSN":["0167-7012"],"issn-type":[{"value":"0167-7012","type":"print"}],"subject":[],"published":{"date-parts":[[2013,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Ribosomal proteins as biomarkers for bacterial identification by mass spectrometry in the clinical microbiology laboratory","name":"articletitle","label":"Article Title"},{"value":"Journal of Microbiological Methods","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.mimet.2013.07.021","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2013 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}]}}