{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,31]],"date-time":"2026-07-31T02:12:24Z","timestamp":1785463944474,"version":"3.56.0"},"reference-count":80,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2024,12,1]],"date-time":"2024-12-01T00:00:00Z","timestamp":1733011200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,12,1]],"date-time":"2024-12-01T00:00:00Z","timestamp":1733011200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,10,9]],"date-time":"2024-10-09T00:00:00Z","timestamp":1728432000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004569","name":"Ministerstwo Edukacji i Nauki","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004569","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010174","name":"University of Colorado","doi-asserted-by":"publisher","award":["DWD\/6\/0425\/2022"],"award-info":[{"award-number":["DWD\/6\/0425\/2022"]}],"id":[{"id":"10.13039\/100010174","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Microbiological Methods"],"published-print":{"date-parts":[[2024,12]]},"DOI":"10.1016\/j.mimet.2024.107052","type":"journal-article","created":{"date-parts":[[2024,10,9]],"date-time":"2024-10-09T17:11:48Z","timestamp":1728493908000},"page":"107052","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":7,"special_numbering":"C","title":["Evaluation of protein extraction protocols for MALDI-TOF Biotyper analysis of mycobacteria"],"prefix":"10.1016","volume":"227","author":[{"given":"Katarzyna","family":"Machnik","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jakub","family":"Smoli\u0144ski","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mariola","family":"Pa\u015bciak","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"6","key":"10.1016\/j.mimet.2024.107052_bb0005","doi-asserted-by":"crossref","first-page":"599","DOI":"10.1016\/j.cmi.2017.11.012","article-title":"How to: identify non-tuberculous Mycobacterium species using MALDI-TOF mass spectrometry","volume":"24","author":"Alcaide","year":"2018","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.mimet.2024.107052_bb0010","doi-asserted-by":"crossref","first-page":"20","DOI":"10.1016\/j.mimet.2016.09.003","article-title":"Matrix assisted laser desorption time of flight mass spectrometry (MALDI-TOF MS) in clinical microbiology","volume":"138","author":"Angeletti","year":"2017","journal-title":"J. Microbiol. Methods"},{"issue":"7","key":"10.1016\/j.mimet.2024.107052_bb0015","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms11071692","article-title":"Improved MALDI-TOF MS identification of Mycobacterium tuberculosis by use of an enhanced cell disruption protocol","volume":"11","author":"Bacanelli","year":"2023","journal-title":"Microorganisms"},{"issue":"10","key":"10.1016\/j.mimet.2024.107052_bib392","doi-asserted-by":"crossref","DOI":"10.1292\/jvms.19-0214","article-title":"Matrix Assisted Laser Desorption Ionization-Time-of-Flight mass spectrometry identification of Mycobacterium bovis in Bovinae","volume":"81","author":"Bacanelli","year":"2019","journal-title":"J. Vet. Med. Sci."},{"key":"10.1016\/j.mimet.2024.107052_bb0020","doi-asserted-by":"crossref","DOI":"10.3389\/fcimb.2021.656880","article-title":"Accurate identification of closely related Mycobacterium tuberculosis complex species by high resolution tandem mass spectrometry","volume":"11","author":"Bajaj","year":"2021","journal-title":"Front. Cell. Infect. Microbiol."},{"issue":"9","key":"10.1016\/j.mimet.2024.107052_bb0025","doi-asserted-by":"crossref","first-page":"2875","DOI":"10.1128\/JCM.00819-13","article-title":"Identification of mycobacteria from solid and liquid media by matrix-assisted laser desorption ionization-time of flight mass spectrometry in the clinical laboratory","volume":"51","author":"Balada-Llasat","year":"2013","journal-title":"J. Clin. Microbiol."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0030","doi-asserted-by":"crossref","first-page":"77","DOI":"10.1111\/1574-6968.12408","article-title":"The influence of culture conditions on the identification of Mycobacterium species by MALDI-TOF MS profiling","volume":"353","author":"Bal\u00e1\u017eov\u00e1","year":"2014","journal-title":"FEMS Microbiol. Lett."},{"key":"10.1016\/j.mimet.2024.107052_bb0035","article-title":"Comparative genomics of BCC vaccines by whole-genome DNA microarray","volume":"1520\u20131523","author":"Behr","year":"1999","journal-title":"Science"},{"issue":"5","key":"10.1016\/j.mimet.2024.107052_bb0040","doi-asserted-by":"crossref","first-page":"2803","DOI":"10.1128\/IAI.72.5.2803-2809.2004","article-title":"Impact of methoxymycolic acid production by Mycobacterium bovis BCG vaccines","volume":"72","author":"Belley","year":"2004","journal-title":"Infect. Immun."},{"issue":"17","key":"10.1016\/j.mimet.2024.107052_bb0045","doi-asserted-by":"crossref","first-page":"2056","DOI":"10.1016\/j.vaccine.2015.02.056","article-title":"Variation of growth in the production of the BCG vaccine and the association with the immune response. An observational study within a randomised trial","volume":"33","author":"Biering-S\u00f8rensen","year":"2015","journal-title":"Vaccine"},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0050","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.mimet.2012.10.014","article-title":"Use of MALDI-TOF mass spectrometry for identification of bacteria that are difficult to culture","volume":"92","author":"Biswas","year":"2013","journal-title":"J. Microbiol. Methods"},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0055","article-title":"Accuracy of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of mycobacteria: a systematic review and meta-analysis","volume":"8","author":"Cao","year":"2018","journal-title":"Sci. Rep."},{"issue":"48","key":"10.1016\/j.mimet.2024.107052_bb0060","doi-asserted-by":"crossref","first-page":"8114","DOI":"10.1016\/j.vaccine.2007.09.041","article-title":"Differential productions of lipid virulence factors among BCG vaccine strains and implications on BCG safety","volume":"25","author":"Chen","year":"2007","journal-title":"Vaccine"},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0065","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-017-12718-4","article-title":"Dissecting the mycobacterial cell envelope and defining the composition of the native mycomembrane","volume":"7","author":"Chiaradia","year":"2017","journal-title":"Sci. Rep."},{"issue":"10","key":"10.1016\/j.mimet.2024.107052_bb0070","doi-asserted-by":"crossref","DOI":"10.3390\/ijms23105797","article-title":"Different Cutibacterium acnes Phylotypes release distinct extracellular vesicles","volume":"23","author":"Chudzik","year":"2022","journal-title":"Int. J. Mol. Sci."},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0075","doi-asserted-by":"crossref","first-page":"547","DOI":"10.1128\/CMR.00072-12","article-title":"Matrix-assisted laser desorption ionization-time of flight mass spectrometry: a fundamental shift in the routine practice of clinical microbiology","volume":"26","author":"Clark","year":"2013","journal-title":"Clin. Microbiol. Rev."},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bib391","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1080\/00401706.1964.10490181","article-title":"Multiple Comparisons Using Rank Sums","volume":"6","author":"Dunn","year":"1964","journal-title":"Technometrics"},{"issue":"9","key":"10.1016\/j.mimet.2024.107052_bb0080","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0024720","article-title":"Matrix-assisted laser desorption\/ionization time-of-flight mass spectrometry identification of mycobacteria in routine clinical practice","volume":"6","author":"El Kh\u00e9chine","year":"2011","journal-title":"PLoS One"},{"issue":"11","key":"10.1016\/j.mimet.2024.107052_bb0085","doi-asserted-by":"crossref","DOI":"10.3390\/vaccines10111881","article-title":"How MALDI-TOF mass spectrometry technology contributes to microbial infection control in healthcare settings","volume":"10","author":"Elbehiry","year":"2022","journal-title":"Vaccines"},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0090","doi-asserted-by":"crossref","first-page":"16","DOI":"10.1016\/j.syapm.2014.10.009","article-title":"VibrioBase: a MALDI-TOF MS database for fast identification of Vibrio spp. that are potentially pathogenic in humans","volume":"38","author":"Erler","year":"2015","journal-title":"Syst. Appl. Microbiol."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0095","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1186\/s13071-019-3493-9","article-title":"MALDI-TOF mass spectrometry as a diagnostic tool in human and veterinary helminthology: a systematic review","volume":"12","author":"Feucherolles","year":"2019","journal-title":"Parasit. Vectors"},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0100","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1080\/1040841X.2017.1407745","article-title":"Recent advances in the microbiological diagnosis of bloodstream infections","volume":"44","author":"Florio","year":"2018","journal-title":"Crit. Rev. Microbiol."},{"key":"10.1016\/j.mimet.2024.107052_bb0105","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1016\/j.anaerobe.2018.09.007","article-title":"Identification and diversity of Actinomyces species in a clinical microbiology laboratory in the MALDI-TOF MS era","volume":"54","author":"Fong","year":"2018","journal-title":"Anaerobe"},{"issue":"5","key":"10.1016\/j.mimet.2024.107052_bb0110","doi-asserted-by":"crossref","first-page":"732","DOI":"10.1038\/nprot.2009.37","article-title":"Phylogenetic classification and identification of bacteria by mass spectrometry","volume":"4","author":"Freiwald","year":"2009","journal-title":"Nat. Protoc."},{"issue":"Pt 5","key":"10.1016\/j.mimet.2024.107052_bb0115","doi-asserted-by":"crossref","first-page":"1443","DOI":"10.1099\/mic.0.27791-0","article-title":"Direct molecular mass determination of trehalose monomycolate from 11 species of mycobacteria by MALDI-TOF mass spectrometry","volume":"151","author":"Fujita","year":"2005","journal-title":"Microbiology"},{"issue":"Pt 10","key":"10.1016\/j.mimet.2024.107052_bb0120","doi-asserted-by":"crossref","first-page":"3403","DOI":"10.1099\/mic.0.28158-0","article-title":"Intact molecular characterization of cord factor (trehalose 6,6\u2032-dimycolate) from nine species of mycobacteria by MALDI-TOF mass spectrometry","volume":"151","author":"Fujita","year":"2005","journal-title":"Microbiology"},{"key":"10.1016\/j.mimet.2024.107052_bb0125","series-title":"Global Tuberculosis Report","author":"Global Tuberculosis Report","year":"2023"},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0130","doi-asserted-by":"crossref","first-page":"387.e1","DOI":"10.1016\/j.cmi.2022.10.017","article-title":"Performance of lipid fingerprint by routine matrix-assisted laser desorption\/ionization time of flight for the diagnosis of Mycobacterium tuberculosis complex species","volume":"29","author":"Gonzalo","year":"2023","journal-title":"Clin. Microbiol. Infect."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0135","doi-asserted-by":"crossref","first-page":"696","DOI":"10.2478\/ahem-2021-0050","article-title":"The key factors contributing to the risk, diagnosis and treatment of non-tuberculous mycobacterial opportunistic infections","volume":"75","author":"Grzegorzewicz","year":"2021","journal-title":"Postepy Hig. Med. Dosw."},{"issue":"5","key":"10.1016\/j.mimet.2024.107052_bb0140","doi-asserted-by":"crossref","DOI":"10.3390\/microorganisms8050734","article-title":"Each Mycobacterium requires a specific culture medium composition for triggering an optimized immunomodulatory and antitumoral effect","volume":"8","author":"Guallar-Garrido","year":"2020","journal-title":"Microorganisms"},{"issue":"2","key":"10.1016\/j.mimet.2024.107052_bb0145","article-title":"Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera","volume":"9","author":"Gupta","year":"2018","journal-title":"Front. Microbiol."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0150","doi-asserted-by":"crossref","first-page":"247","DOI":"10.1016\/S0378-1135(03)00185-8","article-title":"Preliminary characterization of chemically generated Mycobacterium avium subsp. paratuberculosis cell wall deficient forms (Spheroplasts)","volume":"95","author":"Hines","year":"2003","journal-title":"Vet. Microbiol."},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0155","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1016\/j.jasms.2006.10.020","article-title":"Structural characterization of phosphatidyl-myo-inositol mannosides from Mycobacterium bovis Bacillus Calmette G\u00faerin by multiple-stage quadrupole ion-trap mass spectrometry with electrospray ionization. II. Monoacyl- and diacyl-PIMs","volume":"18","author":"Hsu","year":"2007","journal-title":"J. Am. Soc. Mass Spectrom."},{"issue":"8","key":"10.1016\/j.mimet.2024.107052_bb0160","doi-asserted-by":"crossref","first-page":"667","DOI":"10.1080\/14737159.2019.1643238","article-title":"How MALDI-TOF mass spectrometry can aid the diagnosis of hard-to-identify pathogenic bacteria\u2013the rare and the unknown","volume":"19","author":"Kostrzewa","year":"2019","journal-title":"Expert. Rev. Mol. Diagn."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0165","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1016\/j.tube.2014.11.001","article-title":"Mycobacterial envelope lipids fingerprint from direct MALDI-TOF MS analysis of intact bacilli","volume":"95","author":"Larrouy-Maumus","year":"2015","journal-title":"Tuberculosis"},{"issue":"5","key":"10.1016\/j.mimet.2024.107052_bb0170","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1021\/acsmeasuresciau.2c00019","article-title":"MALDI-TOF mass spectrometry in clinical analysis and research","volume":"2","author":"Li","year":"2022","journal-title":"ACS Measurem. Sci. Au"},{"issue":"9","key":"10.1016\/j.mimet.2024.107052_bb0175","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0075913","article-title":"Systems-based approaches to probing metabolic variation within the Mycobacterium tuberculosis complex","volume":"8","author":"Lofthouse","year":"2013","journal-title":"PLoS One"},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0180","doi-asserted-by":"crossref","first-page":"514","DOI":"10.3389\/fmicb.2018.00514","article-title":"Stable regulation of cell cycle events in mycobacteria: insights from inherently heterogeneous bacterial populations","volume":"9","author":"Logsdon","year":"2018","journal-title":"Front. Microbiol."},{"issue":"12","key":"10.1016\/j.mimet.2024.107052_bb0185","doi-asserted-by":"crossref","first-page":"4481","DOI":"10.1128\/JCM.01397-10","article-title":"Rapid identification of mycobacterial whole cells in solid and liquid culture media by matrix-assisted laser desorption ionization-time of flight mass spectrometry","volume":"48","author":"Lotz","year":"2010","journal-title":"J. Clin. Microbiol."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0190","doi-asserted-by":"crossref","first-page":"130","DOI":"10.1128\/JCM.01996-13","article-title":"Comparison of the bruker biotyper and vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of mycobacteria using simplified protein extraction protocols","volume":"52","author":"Mather","year":"2014","journal-title":"J. Clin. Microbiol."},{"issue":"2","key":"10.1016\/j.mimet.2024.107052_bb0195","doi-asserted-by":"crossref","first-page":"1180","DOI":"10.1128\/AEM.72.2.1180-1189.2006","article-title":"Matrix-assisted laser desorption ionization-time of flight mass spectrometry for the discrimination of food-borne microorganisms","volume":"72","author":"Mazzeo","year":"2006","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.mimet.2024.107052_bb0200","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1016\/S0021-9673(00)88433-2","article-title":"Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria","volume":"188","author":"Minnikin","year":"1980","journal-title":"J. Chromatogr."},{"issue":"10","key":"10.1016\/j.mimet.2024.107052_bb0205","first-page":"2733","article-title":"Mycolic acid patterns of representatives of Mycobacterium bovis BCG","volume":"130","author":"Minnikin","year":"1984","journal-title":"J. Gen. Microbiol."},{"issue":"6","key":"10.1016\/j.mimet.2024.107052_bb0210","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0127588","article-title":"Liquid vs solid culture medium to evaluate proportion and time to change in management of suspects of tuberculosis - a pragmatic randomized trial in secondary and tertiary health care units in Brazil","volume":"10","author":"Moreira","year":"2015","journal-title":"PLoS One"},{"key":"10.1016\/j.mimet.2024.107052_bb0215","doi-asserted-by":"crossref","first-page":"37","DOI":"10.1007\/5584_2017_26","article-title":"Identification of Mycobacterium species by MALDI-TOF mass spectrometry","volume":"1021","author":"Neuschlova","year":"2017","journal-title":"Adv. Exp. Med. Biol."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0220","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1128\/JCM.38.1.152-157.2000","article-title":"Differentiation among members of the Mycobacterium tuberculosis complex by molecular and biochemical features: evidence for two pyrazinamide-susceptible subtypes of M. Bovis","volume":"38","author":"Niemann","year":"2000","journal-title":"J. Clin. Microbiol."},{"issue":"02","key":"10.1016\/j.mimet.2024.107052_bb0225","doi-asserted-by":"crossref","DOI":"10.4172\/2161-1068.1000260","article-title":"Use of ultrasonication as a rapid pretreatment method for MALDI-TOF MS of mycobacterial samples","volume":"08","author":"Niitsuma","year":"2018","journal-title":"Mycobacteri. Diseases"},{"issue":"6","key":"10.1016\/j.mimet.2024.107052_bb0230","doi-asserted-by":"crossref","first-page":"528","DOI":"10.1016\/j.bbapap.2014.10.022","article-title":"Proteome-based bacterial identification using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS): a revolutionary shift in clinical diagnostic microbiology","volume":"1854","author":"Nomura","year":"2015","journal-title":"Biochim. Biophys. Acta, Proteins Proteomics"},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0235","doi-asserted-by":"crossref","first-page":"243","DOI":"10.1054\/tuld.1999.0206","article-title":"Development of the Mycobacterium bovis BCG vaccine: review of the historical and biochemical evidence for a genealogical tree","volume":"79","author":"Oettinger","year":"1999","journal-title":"Tuber. Lung Dis."},{"issue":"2","key":"10.1016\/j.mimet.2024.107052_bb0240","doi-asserted-by":"crossref","DOI":"10.1093\/femsre\/fuae006","article-title":"Evolution and emergence of Mycobacterium tuberculosis","volume":"48","author":"Orgeur","year":"2024","journal-title":"FEMS Microbiol. Rev."},{"key":"10.1016\/j.mimet.2024.107052_bb0245","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1016\/j.cca.2016.06.039","article-title":"The impact of protein extraction protocols on the performance of currently available MALDI-TOF mass spectrometry for identification of mycobacterial clinical isolates cultured in liquid media","volume":"460","author":"Park","year":"2016","journal-title":"Clin. Chim. Acta"},{"key":"10.1016\/j.mimet.2024.107052_bb0250","doi-asserted-by":"crossref","first-page":"2611","DOI":"10.1128\/JCM.00268-15","article-title":"Creation of an in-house matrix-assisted laser desorption ionization-time of flight mass spectrometry Corynebacterineae database overcomes difficulties in identification of Nocardia farcinica clinical isolates","volume":"53","author":"Pa\u015bciak","year":"2015","journal-title":"J. Clin. Microbiol."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0255","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1093\/cid\/cit247","article-title":"Matrix-assisted laser desorption ionization-time of flight mass spectrometry in clinical microbiology","volume":"57","author":"Patel","year":"2013","journal-title":"Clin. Infect. Dis."},{"key":"10.1016\/j.mimet.2024.107052_bb0260","series-title":"Microbiology of Waterborne Diseases: Microbiological Aspects and Risks: Second Edition","first-page":"177","article-title":"Mycobacterium","author":"Percival","year":"2013"},{"key":"10.1016\/j.mimet.2024.107052_bb0265","series-title":"A Novel MALDI-TOF Mass Spectrometry Sample Preparation Strategy for Improved Proteomic Biotyping of Clinically Signicant Mycobacteria","author":"Pillay","year":"2022"},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0270","doi-asserted-by":"crossref","first-page":"229","DOI":"10.1136\/jclinpath-2014-202374","article-title":"Matrix-assisted laser desorption\/ionisation time-of-flight (MALDI-TOF) mass spectrometry (MS) for the identification of mycobacteria from MBBacT ALERT 3D liquid cultures and Lowenstein-Jensen (LJ) solid cultures","volume":"68","author":"Quinlan","year":"2015","journal-title":"J. Clin. Pathol."},{"key":"10.1016\/j.mimet.2024.107052_bb0275","series-title":"R: A Language and Environment for Statistical Computing_","author":"R Core Team","year":"2023"},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0280","doi-asserted-by":"crossref","first-page":"875","DOI":"10.1046\/j.1365-2958.2003.03473.x","article-title":"Identification and macrophage-activating activity of glycolipids released from intracellular Mycobacterium bovis BCG","volume":"48","author":"Rhoades","year":"2003","journal-title":"Mol. Microbiol."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0285","doi-asserted-by":"crossref","first-page":"324","DOI":"10.1099\/ijsem.0.002507","volume":"68","author":"Riojas","year":"2018","journal-title":"Int. J. Syst. Evol. Microbiol."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0290","doi-asserted-by":"crossref","first-page":"248","DOI":"10.1016\/j.tube.2009.03.002","article-title":"Mapping the global use of different BCG vaccine strains","volume":"89","author":"Ritz","year":"2009","journal-title":"Tuberculosis"},{"key":"10.1016\/j.mimet.2024.107052_bb0295","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2022.753969","article-title":"Rapid identification of Mycobacterium tuberculosis complex using mass spectrometry: a proof of concept","volume":"13","author":"Robinne","year":"2022","journal-title":"Front. Microbiol."},{"issue":"8","key":"10.1016\/j.mimet.2024.107052_bb0300","doi-asserted-by":"crossref","first-page":"2737","DOI":"10.1128\/JCM.01380-15","article-title":"Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nontuberculous mycobacteria from clinical isolates","volume":"53","author":"Rodr\u00edguez-S\u00e1nchez","year":"2015","journal-title":"J. Clin. Microbiol."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0305","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.01548-17","article-title":"Evaluation of two protein extraction protocols based on freezing and mechanical disruption for identifying nontuberculous mycobacteria by matrix-assisted laser desorption ionization\u2013time of flight mass spectrometry from liquid and solid cultures","volume":"56","author":"Rodriguez-Temporal","year":"2018","journal-title":"J. Clin. Microbiol."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0310","doi-asserted-by":"crossref","first-page":"746","DOI":"10.1021\/ac0008791","article-title":"Characterization of the protein subset desorbed by MALDI from whole bacterial cells","volume":"73","author":"Ryzhov","year":"2001","journal-title":"Anal. Chem."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0315","doi-asserted-by":"crossref","DOI":"10.1128\/JCM.01778-18","article-title":"Heat inactivation renders sputum safe and preserves Mycobacterium tuberculosis RNA for downstream molecular tests","volume":"57","author":"Sabiiti","year":"2018","journal-title":"J. Clin. Microbiol."},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0320","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1016\/j.tim.2014.01.004","article-title":"Hiding behind the mycobacterial cell wall","volume":"22","author":"Song","year":"2014","journal-title":"Trends Microbiol."},{"key":"10.1016\/j.mimet.2024.107052_bb0325","series-title":"Intermediate Statistics: A Modern Approach","author":"Stevens","year":"2013"},{"issue":"3","key":"10.1016\/j.mimet.2024.107052_bb0330","doi-asserted-by":"crossref","first-page":"566","DOI":"10.1128\/jcm.35.3.566-569.1997","article-title":"PCR identification of Mycobacterium bovis BCG","volume":"35","author":"Talbot","year":"1997","journal-title":"J. Clin. Microbiol."},{"issue":"10","key":"10.1016\/j.mimet.2024.107052_bb0335","doi-asserted-by":"crossref","first-page":"3301","DOI":"10.1128\/JCM.01405-12","volume":"50","author":"Tan","year":"2012","journal-title":"J. Clin. Microbiol."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0340","doi-asserted-by":"crossref","first-page":"152","DOI":"10.1177\/1535676017737315","article-title":"Evaluation of tissue fixation methods to inactivate Mycobacterium bovis under routine laboratory conditions","volume":"22","author":"Thacker","year":"2017","journal-title":"Appl. Biosaf."},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0345","doi-asserted-by":"crossref","first-page":"1900795","DOI":"10.1183\/13993003.00795-2019","article-title":"Same meat, different gravy: ignore the new names of mycobacteria","volume":"54","author":"Tortoli","year":"2019","journal-title":"Eur. Respir. J."},{"key":"10.1016\/j.mimet.2024.107052_bb0350","author":"UK Health Security Agency"},{"issue":"12","key":"10.1016\/j.mimet.2024.107052_bb0355","doi-asserted-by":"crossref","first-page":"1660","DOI":"10.3390\/antibiotics12121660","article-title":"Clinical impact of rapid bacterial microbiological identification with the MALDI-TOF MS","volume":"12","author":"Uzuriaga","year":"2023","journal-title":"Antibiotics"},{"issue":"1","key":"10.1016\/j.mimet.2024.107052_bb0360","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1128\/AEM.71.1.58-64.2005","article-title":"Effect of culture conditions on microorganism identification by matrix-assisted laser desorption ionization mass spectrometry","volume":"71","author":"Valentine","year":"2005","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.mimet.2024.107052_bb0365","first-page":"1645","article-title":"Mycobacteria","volume":"2","author":"Van Ingen","year":"2017","journal-title":"Infect. Dis. Ther."},{"issue":"11","key":"10.1016\/j.mimet.2024.107052_bb0370","doi-asserted-by":"crossref","first-page":"4015","DOI":"10.1128\/JCM.01234-10","article-title":"Evaluation of matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of Nocardia species","volume":"48","author":"Verroken","year":"2010","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.mimet.2024.107052_bb0375","doi-asserted-by":"crossref","first-page":"265","DOI":"10.15585\/mmwr.mm7312a4","article-title":"Tuberculosis-United States","volume":"73","author":"Williams","year":"2023","journal-title":"Morb. Mortal. Wkly Rep."},{"issue":"2","key":"10.1016\/j.mimet.2024.107052_bb0380","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1016\/j.diagmicrobio.2017.06.019","article-title":"Identification of Nocardia, Streptomyces, and Tsukamurella using MALDI-TOF MS with the Bruker Biotyper","volume":"89","author":"Yarbrough","year":"2017","journal-title":"Diagn. Microbiol. Infect. Dis."},{"issue":"4","key":"10.1016\/j.mimet.2024.107052_bb0385","doi-asserted-by":"crossref","first-page":"1381","DOI":"10.1128\/IAI.06370-11","article-title":"Both phthiocerol dimycocerosates and phenolic glycolipids are required for virulence of Mycobacterium marinum","volume":"80","author":"Yu","year":"2012","journal-title":"Infect. Immun."},{"issue":"8","key":"10.1016\/j.mimet.2024.107052_bb0390","article-title":"Genome sequencing and analysis of BCG vaccine strains","volume":"8","author":"Zhang","year":"2013","journal-title":"PLoS One"}],"container-title":["Journal of Microbiological Methods"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0167701224001647?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0167701224001647?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,11,24]],"date-time":"2024-11-24T05:42:32Z","timestamp":1732426952000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0167701224001647"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,12]]},"references-count":80,"alternative-id":["S0167701224001647"],"URL":"https:\/\/doi.org\/10.1016\/j.mimet.2024.107052","relation":{},"ISSN":["0167-7012"],"issn-type":[{"value":"0167-7012","type":"print"}],"subject":[],"published":{"date-parts":[[2024,12]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Evaluation of protein extraction protocols for MALDI-TOF Biotyper analysis of mycobacteria","name":"articletitle","label":"Article Title"},{"value":"Journal of Microbiological Methods","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.mimet.2024.107052","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Authors. Published by Elsevier B.V.","name":"copyright","label":"Copyright"}],"article-number":"107052"}}