{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,8,21]],"date-time":"2025-08-21T21:10:09Z","timestamp":1755810609544,"version":"3.44.0"},"reference-count":33,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,9,1]],"date-time":"2025-09-01T00:00:00Z","timestamp":1756684800000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Journal of Microbiological Methods"],"published-print":{"date-parts":[[2025,9]]},"DOI":"10.1016\/j.mimet.2025.107155","type":"journal-article","created":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T10:42:22Z","timestamp":1748774542000},"page":"107155","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Classifying fungi biodiversity using hybrid transformer models"],"prefix":"10.1016","volume":"236","author":[{"given":"Madhurie Kumar","family":"Seth","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"K.","family":"Srinivas","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"A. Charan","family":"Kumari","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.mimet.2025.107155_bb0005","first-page":"91","article-title":"Using mobile apps for mycological identification in citizen science","volume":"5","author":"Beltran","year":"2021","journal-title":"Eco Apps Rev."},{"key":"10.1016\/j.mimet.2025.107155_bb0010","first-page":"305","article-title":"Fungal disease detection in wheat using AI","volume":"2","author":"Carlucci","year":"2021","journal-title":"Precis. Agric. Adv."},{"key":"10.1016\/j.mimet.2025.107155_bb0015","first-page":"19867","article-title":"Transfer learning for fungal species detection","volume":"12","author":"Chatterjee","year":"2021","journal-title":"IEEE Access"},{"key":"10.1016\/j.mimet.2025.107155_bb0020","first-page":"43","article-title":"AI and citizen science: innovations in fungal identification","volume":"11","author":"Chen","year":"2023","journal-title":"Glob. J. Biodivers."},{"key":"10.1016\/j.mimet.2025.107155_bb0025","first-page":"21","article-title":"Detection of fungal infections from microscopic fungal images using deep learning techniques","volume":"11","author":"Cinar","year":"2023","journal-title":"Proc. Int. Conf. Adv. Technol."},{"key":"10.1016\/j.mimet.2025.107155_bb0030","first-page":"11929","article-title":"An image is worth 16\u00d716 words: transformers for image recognition at scale","author":"Dosovitskiy","year":"2021","journal-title":"arXiv 2010"},{"key":"10.1016\/j.mimet.2025.107155_bb0035","first-page":"293","article-title":"Deep transfer learning for fungal spores in medical images","volume":"7","author":"Garcia","year":"2020","journal-title":"Med. Image Anal."},{"key":"10.1016\/j.mimet.2025.107155_bb0040","doi-asserted-by":"crossref","first-page":"1500","DOI":"10.3390\/plants10081500","article-title":"Image-based wheat fungi diseases identification by deep learning","volume":"10","author":"Genaev","year":"2021","journal-title":"Plants"},{"key":"10.1016\/j.mimet.2025.107155_bb0045","series-title":"Fungal Infections of the Central Nervous System","article-title":"Morphological classification of fungal infections (yeasts, mold, dimorphic)","author":"Gorthi","year":"2019"},{"key":"10.1016\/j.mimet.2025.107155_bb0050","doi-asserted-by":"crossref","first-page":"152","DOI":"10.46810\/tdfd.1442556","article-title":"Classification of microscopic fungi images using vision transformers for enhanced detection of fungal infections","volume":"13","author":"G\u00fcm\u00fc\u015f","year":"2024","journal-title":"T\u00fcrk Do\u011fa Fen Derg."},{"key":"10.1016\/j.mimet.2025.107155_bb0055","article-title":"DeFungi [dataset]","author":"Hajati","year":"2021","journal-title":"UCI Machine Learning Repository."},{"key":"10.1016\/j.mimet.2025.107155_bb0060","series-title":"Proc. Int. Conf. Adv. Comput. Vis. Artif. Intell. Technol","first-page":"546","article-title":"Deep learning-based classification of microscopic fungi for agriculture application","author":"Hangarge","year":"2023"},{"author":"Huang","key":"10.1016\/j.mimet.2025.107155_bb0065"},{"key":"10.1016\/j.mimet.2025.107155_bb0070","first-page":"210","article-title":"DeepFungiNet: classification of microscopic fungal images using deep learning","volume":"9","author":"Kaur","year":"2023","journal-title":"J. Fungal Res."},{"key":"10.1016\/j.mimet.2025.107155_bb0075","first-page":"302","article-title":"Deep bag-of-features approach to fungi image classification","volume":"6","author":"Kim","year":"2022","journal-title":"Comput. Vis. Plant Health"},{"key":"10.1016\/j.mimet.2025.107155_bb0080","first-page":"98","article-title":"FungiNet: a CNN approach for classifying fungi in plant diseases","volume":"3","author":"Kumar","year":"2022","journal-title":"Agric. AI J."},{"key":"10.1016\/j.mimet.2025.107155_bb0085","first-page":"2103.14030","article-title":"Swin transformer: hierarchical vision transformer using shifted windows","author":"Liu","year":"2021","journal-title":"arXiv"},{"key":"10.1016\/j.mimet.2025.107155_bb0090","doi-asserted-by":"crossref","first-page":"4222","DOI":"10.1016\/j.csbj.2024.11.027","article-title":"Automatic classification of fungal\u2013fungal interactions using deep learning models","volume":"23","author":"Mansourvar","year":"2024","journal-title":"Comput. Struct. Biotechnol. J."},{"key":"10.1016\/j.mimet.2025.107155_bb0095","first-page":"221","article-title":"AI for mycology: enhancements in field-based fungal detection","volume":"4","author":"Miura","year":"2021","journal-title":"Environ. Mycol."},{"year":"2024","series-title":"Classification of fungi Images Using Different Convolutional Neural Networks","author":"Nawarathne","key":"10.1016\/j.mimet.2025.107155_bb0100"},{"key":"10.1016\/j.mimet.2025.107155_bb0105","doi-asserted-by":"crossref","first-page":"633","DOI":"10.3390\/s22020633","article-title":"Automatic fungi recognition: deep learning meets mycology","volume":"22","author":"Picek","year":"2022","journal-title":"Sensors"},{"key":"10.1016\/j.mimet.2025.107155_bb0110","doi-asserted-by":"crossref","unstructured":"Pineda Sopo, C.J., Hajati, F., Gheisari, S., 2021. DeFungi: direct mycological examination of microscopic fungi images. 60, P456. arXiv Prepr. https:\/\/arxiv.org\/abs\/2109.07322.","DOI":"10.1093\/mmy\/myac072.P456"},{"key":"10.1016\/j.mimet.2025.107155_bb0115","article-title":"RaViTT: random vision transformer tokens","author":"Quezada","year":"2023","journal-title":"arXiv Prepr"},{"key":"10.1016\/j.mimet.2025.107155_bb0120","first-page":"211","article-title":"A novel convolutional approach for identifying pathogenic fungi","volume":"4","author":"Rawat","year":"2022","journal-title":"J. Agric. Biotechnol."},{"key":"10.1016\/j.mimet.2025.107155_bb0125","doi-asserted-by":"crossref","DOI":"10.1016\/j.fraope.2023.100069","article-title":"MeFunX: a novel meta-learning-based deep learning architecture to detect fungal infection directly from microscopic images","volume":"6","author":"Rawat","year":"2024","journal-title":"Franklin Open"},{"author":"Sandler","key":"10.1016\/j.mimet.2025.107155_bb0130"},{"year":"2023","series-title":"Microscopic fungi Classification Using Vision Transformer Guided by Transfer Learning Approach","author":"Sheikh","key":"10.1016\/j.mimet.2025.107155_bb0135"},{"key":"10.1016\/j.mimet.2025.107155_bb0140","first-page":"160","article-title":"Artificial intelligence in fungal pathogen diagnosis for healthcare","volume":"3","author":"Singh","year":"2021","journal-title":"Healthc. AI J."},{"key":"10.1016\/j.mimet.2025.107155_bb0145","first-page":"512","article-title":"Classification of fungal pathogens in agricultural crops","volume":"58","author":"Singh","year":"2022","journal-title":"Int. J. Plant Pathol."},{"key":"10.1016\/j.mimet.2025.107155_bb0150","first-page":"123","article-title":"Machine learning in microscopic fungal spores classification","volume":"4","author":"Tahir","year":"2023","journal-title":"Front. Artif. Intell."},{"author":"Tan","key":"10.1016\/j.mimet.2025.107155_bb0155"},{"key":"10.1016\/j.mimet.2025.107155_bb0160","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0234806","article-title":"Deep learning approach to describe and classify fungi microscopic images","volume":"15","author":"Zieli\u0144ski","year":"2020","journal-title":"PLoS One"},{"key":"10.1016\/j.mimet.2025.107155_bb0165","first-page":"5016","article-title":"Automatic fungi recognition: deep learning meets mycology","volume":"20","author":"Zielinski","year":"2023","journal-title":"Sensors"}],"container-title":["Journal of Microbiological Methods"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0167701225000715?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0167701225000715?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,8,21]],"date-time":"2025-08-21T20:38:28Z","timestamp":1755808708000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0167701225000715"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,9]]},"references-count":33,"alternative-id":["S0167701225000715"],"URL":"https:\/\/doi.org\/10.1016\/j.mimet.2025.107155","relation":{},"ISSN":["0167-7012"],"issn-type":[{"type":"print","value":"0167-7012"}],"subject":[],"published":{"date-parts":[[2025,9]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Classifying fungi biodiversity using hybrid transformer models","name":"articletitle","label":"Article Title"},{"value":"Journal of Microbiological Methods","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.mimet.2025.107155","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier B.V. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"107155"}}