{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T13:24:38Z","timestamp":1790861078154,"version":"4.1.0"},"reference-count":79,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2020,6,1]],"date-time":"2020-06-01T00:00:00Z","timestamp":1590969600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2020,6,1]],"date-time":"2020-06-01T00:00:00Z","timestamp":1590969600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2021,6,1]],"date-time":"2021-06-01T00:00:00Z","timestamp":1622505600000},"content-version":"vor","delay-in-days":365,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"DOI":"10.13039\/501100002855","name":"Ministry of Science and Technology of the People's Republic of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002855","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["cell.com","elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Molecular Plant"],"published-print":{"date-parts":[[2020,6]]},"DOI":"10.1016\/j.molp.2020.02.009","type":"journal-article","created":{"date-parts":[[2020,2,19]],"date-time":"2020-02-19T02:47:35Z","timestamp":1582080455000},"page":"851-863","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":118,"title":["Regulation of Rice Tillering by RNA-Directed DNA Methylation at Miniature Inverted-Repeat Transposable Elements"],"prefix":"10.1016","volume":"13","author":[{"given":"Le","family":"Xu","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kun","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Meng","family":"Yuan","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xiangbing","family":"Meng","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Min","family":"Chen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jianguo","family":"Wu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiayang","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7100-1700","authenticated-orcid":false,"given":"Yijun","family":"Qi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.molp.2020.02.009_bib1","doi-asserted-by":"crossref","first-page":"796","DOI":"10.1038\/35048692","article-title":"Analysis of the genome sequence of the flowering plant Arabidopsis thaliana","volume":"408","author":"Arabidopsis Genome Initiative","year":"2000","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib2","doi-asserted-by":"crossref","first-page":"1019","DOI":"10.1111\/j.1365-313X.2007.03210.x","article-title":"DWARF10, an RMS1\/MAX4\/DAD1 ortholog, controls lateral bud outgrowth in rice","volume":"51","author":"Arite","year":"2007","journal-title":"Plant J."},{"key":"10.1016\/j.molp.2020.02.009_bib3","doi-asserted-by":"crossref","first-page":"1416","DOI":"10.1093\/pcp\/pcp091","article-title":"d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers","volume":"50","author":"Arite","year":"2009","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.molp.2020.02.009_bib4","doi-asserted-by":"crossref","first-page":"e09591","DOI":"10.7554\/eLife.09591","article-title":"Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis","volume":"4","author":"Blevins","year":"2015","journal-title":"eLife"},{"key":"10.1016\/j.molp.2020.02.009_bib5","doi-asserted-by":"crossref","first-page":"1411","DOI":"10.1073\/pnas.91.4.1411","article-title":"Mobile inverted-repeat elements of the tourist family are associated with the genes of many cereal grasses","volume":"91","author":"Bureau","year":"1994","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.molp.2020.02.009_bib6","doi-asserted-by":"crossref","first-page":"1138","DOI":"10.1016\/S0960-9822(02)00925-9","article-title":"Role of the Arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing","volume":"12","author":"Cao","year":"2002","journal-title":"Curr. Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib7","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1007\/s00299-015-1740-x","article-title":"Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway","volume":"34","author":"Chen","year":"2015","journal-title":"Plant Cell Rep."},{"key":"10.1016\/j.molp.2020.02.009_bib8","doi-asserted-by":"crossref","first-page":"5483","DOI":"10.1038\/sj.onc.1205699","article-title":"5-Azacytidine and 5-aza-2\u2032-deoxycytidine as inhibitors of DNA methylation: mechanistic studies and their implications for cancer therapy","volume":"21","author":"Christman","year":"2002","journal-title":"Oncogene"},{"key":"10.1016\/j.molp.2020.02.009_bib9","doi-asserted-by":"crossref","first-page":"215","DOI":"10.1038\/nature06745","article-title":"Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning","volume":"452","author":"Cokus","year":"2008","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib10","doi-asserted-by":"crossref","first-page":"15075","DOI":"10.1038\/nplants.2015.75","article-title":"Transcription and processing of primary microRNAs are coupled by Elongator complex in Arabidopsis","volume":"1","author":"Fang","year":"2015","journal-title":"Nat. Plants"},{"key":"10.1016\/j.molp.2020.02.009_bib11","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1007\/s11103-009-9522-x","article-title":"Dwarf 88, a novel putative esterase gene affecting architecture of rice plant","volume":"71","author":"Gao","year":"2009","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib12","doi-asserted-by":"crossref","first-page":"811","DOI":"10.1016\/j.molcel.2012.09.027","article-title":"In\u00a0vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing","volume":"48","author":"Haag","year":"2012","journal-title":"Mol. Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib13","doi-asserted-by":"crossref","first-page":"2032","DOI":"10.1016\/j.cub.2012.08.007","article-title":"DAD2 is an alpha\/beta hydrolase likely to be involved in the perception of the plant branching hormone, strigolactone","volume":"22","author":"Hamiaux","year":"2012","journal-title":"Curr. Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib14","doi-asserted-by":"crossref","first-page":"1795","DOI":"10.1093\/bioinformatics\/bts264","article-title":"BRAT-BW: efficient and accurate mapping of bisulfite-treated reads","volume":"28","author":"Harris","year":"2012","journal-title":"Bioinformatics"},{"key":"10.1016\/j.molp.2020.02.009_bib15","doi-asserted-by":"crossref","first-page":"1182","DOI":"10.1126\/science.aar7854","article-title":"A DNA methylation reader complex that enhances gene transcription","volume":"362","author":"Harris","year":"2018","journal-title":"Science"},{"key":"10.1016\/j.molp.2020.02.009_bib16","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1126\/science.1106910","article-title":"RNA polymerase IV directs silencing of endogenous DNA","volume":"308","author":"Herr","year":"2005","journal-title":"Science"},{"key":"10.1016\/j.molp.2020.02.009_bib17","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1046\/j.1365-313X.1994.6020271.x","article-title":"Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA","volume":"6","author":"Hiei","year":"1994","journal-title":"Plant J."},{"key":"10.1016\/j.molp.2020.02.009_bib18","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1038\/nature03895","article-title":"The map-based sequence of the rice genome","volume":"436","year":"2005","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib19","doi-asserted-by":"crossref","first-page":"S192","DOI":"10.1093\/pcp\/pci022","article-title":"Suppression of tiller bud activity in tillering dwarf mutants of rice","volume":"46","author":"Ishikawa","year":"2005","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.molp.2020.02.009_bib20","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1038\/nature12870","article-title":"DWARF 53 acts as a repressor of strigolactone signalling in rice","volume":"504","author":"Jiang","year":"2013","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib21","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1038\/ng.591","article-title":"Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice","volume":"42","author":"Jiao","year":"2010","journal-title":"Nat. Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib22","doi-asserted-by":"crossref","first-page":"761","DOI":"10.1038\/ng1580","article-title":"Atypical RNA polymerase subunits required for RNA-directed DNA methylation","volume":"37","author":"Kanno","year":"2005","journal-title":"Nat. Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib23","doi-asserted-by":"crossref","first-page":"451","DOI":"10.1186\/1471-2164-9-451","article-title":"Genome-wide identification, organization and phylogenetic analysis of Dicer-like, Argonaute and RNA-dependent RNA Polymerase gene families and their expression analysis during reproductive development and stress in rice","volume":"9","author":"Kapoor","year":"2008","journal-title":"BMC Genomics"},{"key":"10.1016\/j.molp.2020.02.009_bib24","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1186\/1471-2229-13-209","article-title":"Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat","volume":"13","author":"Khan","year":"2013","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib25","doi-asserted-by":"crossref","first-page":"101","DOI":"10.1016\/j.tig.2015.12.001","article-title":"Epigenome editing: state of the art, concepts, and perspectives","volume":"32","author":"Kungulovski","year":"2016","journal-title":"Trends Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib26","doi-asserted-by":"crossref","first-page":"R25","DOI":"10.1186\/gb-2009-10-3-r25","article-title":"Ultrafast and memory-efficient alignment of short DNA sequences to the human genome","volume":"10","author":"Langmead","year":"2009","journal-title":"Genome Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib27","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1038\/nrg2719","article-title":"Establishing, maintaining and modifying DNA methylation patterns in plants and animals","volume":"11","author":"Law","year":"2010","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib28","doi-asserted-by":"crossref","first-page":"3553","DOI":"10.1073\/pnas.1502279112","article-title":"Regulatory link between DNA methylation and active demethylation in Arabidopsis","volume":"112","author":"Lei","year":"2015","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.molp.2020.02.009_bib29","doi-asserted-by":"crossref","first-page":"618","DOI":"10.1038\/nature01518","article-title":"Control of tillering in rice","volume":"422","author":"Li","year":"2003","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib30","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1016\/j.cell.2006.05.032","article-title":"An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana","volume":"126","author":"Li","year":"2006","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib31","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1101\/gr.182238.114","article-title":"Detection of Pol IV\/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis","volume":"25","author":"Li","year":"2015","journal-title":"Genome Res."},{"key":"10.1016\/j.molp.2020.02.009_bib32","doi-asserted-by":"crossref","first-page":"608","DOI":"10.1093\/nar\/gkv958","article-title":"SUVH1, a Su(var)3-9 family member, promotes the expression of genes targeted by DNA methylation","volume":"44","author":"Li","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.molp.2020.02.009_bib33","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1016\/j.cell.2017.06.008","article-title":"A natural allele of a transcription factor in rice confers broad-spectrum blast resistance","volume":"170","author":"Li","year":"2017","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib34","doi-asserted-by":"crossref","first-page":"1512","DOI":"10.1105\/tpc.109.065987","article-title":"DWARF27, an iron-containing protein required for the biosynthesis of strigolactones, regulates rice tiller bud outgrowth","volume":"21","author":"Lin","year":"2009","journal-title":"Plant Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib35","doi-asserted-by":"crossref","first-page":"752","DOI":"10.1038\/ncomms1716","article-title":"Rice APC\/C(TE) controls tillering by mediating the degradation of MONOCULM 1","volume":"3","author":"Lin","year":"2012","journal-title":"Nat. Commun."},{"key":"10.1016\/j.molp.2020.02.009_bib36","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1038\/nrg3374","article-title":"How important are transposons for plant evolution?","volume":"14","author":"Lisch","year":"2013","journal-title":"Nat. Rev. Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib37","doi-asserted-by":"crossref","first-page":"523","DOI":"10.1016\/j.cell.2008.03.029","article-title":"Highly integrated single-base resolution maps of the epigenome in Arabidopsis","volume":"133","author":"Lister","year":"2008","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib38","doi-asserted-by":"crossref","first-page":"296","DOI":"10.1104\/pp.105.063420","article-title":"Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice","volume":"139","author":"Liu","year":"2005","journal-title":"Plant Physiol."},{"key":"10.1016\/j.molp.2020.02.009_bib39","doi-asserted-by":"crossref","first-page":"649","DOI":"10.1007\/s00425-009-0975-6","article-title":"Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice","volume":"230","author":"Liu","year":"2009","journal-title":"Planta"},{"key":"10.1016\/j.molp.2020.02.009_bib40","doi-asserted-by":"crossref","first-page":"819","DOI":"10.1111\/jipb.12340","article-title":"The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f","volume":"57","author":"Liu","year":"2015","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib41","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib42","doi-asserted-by":"crossref","first-page":"1793","DOI":"10.1093\/pcp\/pcs122","article-title":"Control of tiller growth of rice by OsSPL14 and strigolactones, which work in two independent pathways","volume":"53","author":"Luo","year":"2012","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.molp.2020.02.009_bib43","doi-asserted-by":"crossref","first-page":"1274","DOI":"10.1016\/j.molp.2015.04.007","article-title":"A robust CRISPR\/Cas9 system for convenient, high-efficiency multiplex genome editing in monocot and dicot plants","volume":"8","author":"Ma","year":"2015","journal-title":"Mol. Plant"},{"key":"10.1016\/j.molp.2020.02.009_bib44","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1016\/j.ceb.2009.01.025","article-title":"RNA-mediated chromatin-based silencing in plants","volume":"21","author":"Matzke","year":"2009","journal-title":"Curr. Opin. Cell Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib45","doi-asserted-by":"crossref","first-page":"116","DOI":"10.1016\/j.cell.2008.02.034","article-title":"Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide","volume":"133","author":"Mi","year":"2008","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib46","doi-asserted-by":"crossref","first-page":"545","DOI":"10.1038\/ng.592","article-title":"OsSPL14 promotes panicle branching and higher grain productivity in rice","volume":"42","author":"Miura","year":"2010","journal-title":"Nat. Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib47","doi-asserted-by":"crossref","first-page":"2613","DOI":"10.1038\/ncomms3613","article-title":"Molecular mechanism of strigolactone perception by DWARF14","volume":"4","author":"Nakamura","year":"2013","journal-title":"Nat. Commun."},{"key":"10.1016\/j.molp.2020.02.009_bib48","doi-asserted-by":"crossref","first-page":"613","DOI":"10.1016\/j.cell.2005.02.007","article-title":"Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation","volume":"120","author":"Onodera","year":"2005","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib49","doi-asserted-by":"crossref","first-page":"2030","DOI":"10.1101\/gad.348405","article-title":"Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis","volume":"19","author":"Pontier","year":"2005","journal-title":"Genes Dev."},{"key":"10.1016\/j.molp.2020.02.009_bib50","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1016\/j.molcel.2005.06.014","article-title":"Biochemical specialization within Arabidopsis RNA silencing pathways","volume":"19","author":"Qi","year":"2005","journal-title":"Mol. Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib51","doi-asserted-by":"crossref","first-page":"1008","DOI":"10.1038\/nature05198","article-title":"Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation","volume":"443","author":"Qi","year":"2006","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib52","doi-asserted-by":"crossref","first-page":"352","DOI":"10.1016\/j.cell.2012.10.054","article-title":"Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome","volume":"152","author":"Stroud","year":"2013","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib53","doi-asserted-by":"crossref","first-page":"2041","DOI":"10.1104\/pp.16.00393","article-title":"Analysis of chromatin regulators reveals specific features of rice DNA methylation pathways","volume":"171","author":"Tan","year":"2016","journal-title":"Plant Physiol."},{"key":"10.1016\/j.molp.2020.02.009_bib54","doi-asserted-by":"crossref","first-page":"1105","DOI":"10.1093\/bioinformatics\/btp120","article-title":"TopHat: discovering splice junctions with RNA-Seq","volume":"25","author":"Trapnell","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.molp.2020.02.009_bib55","doi-asserted-by":"crossref","first-page":"1198","DOI":"10.1111\/nph.13432","article-title":"Step-wise and lineage-specific diversification of plant RNA polymerase genes and origin of the largest plant-specific subunits","volume":"207","author":"Wang","year":"2015","journal-title":"New Phytol."},{"key":"10.1016\/j.molp.2020.02.009_bib56","doi-asserted-by":"crossref","first-page":"738","DOI":"10.1016\/j.cell.2009.06.014","article-title":"miR156-Regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana","volume":"138","author":"Wang","year":"2009","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib57","doi-asserted-by":"crossref","first-page":"15504","DOI":"10.1073\/pnas.1521949112","article-title":"Coordinated regulation of vegetative and reproductive branching in rice","volume":"112","author":"Wang","year":"2015","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.molp.2020.02.009_bib58","doi-asserted-by":"crossref","first-page":"3877","DOI":"10.1073\/pnas.1318131111","article-title":"Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice","volume":"111","author":"Wei","year":"2014","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.molp.2020.02.009_bib59","doi-asserted-by":"crossref","first-page":"635","DOI":"10.1016\/j.cell.2008.09.035","article-title":"Noncoding transcription by RNA polymerase Pol IVb\/Pol V mediates transcriptional silencing of overlapping and adjacent genes","volume":"135","author":"Wierzbicki","year":"2008","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib60","doi-asserted-by":"crossref","first-page":"e1005142","DOI":"10.1371\/journal.pgen.1005142","article-title":"Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat","volume":"11","author":"Williams","year":"2015","journal-title":"PLoS Genet."},{"key":"10.1016\/j.molp.2020.02.009_bib61","doi-asserted-by":"crossref","first-page":"750","DOI":"10.1016\/j.cell.2009.06.031","article-title":"The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis","volume":"138","author":"Wu","year":"2009","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib62","doi-asserted-by":"crossref","first-page":"110","DOI":"10.1111\/jipb.12768","article-title":"A group of SUVH methyl-DNA binding proteins regulate expression of the DNA demethylase ROS1 in Arabidopsis","volume":"61","author":"Xiao","year":"2019","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib63","doi-asserted-by":"crossref","first-page":"642","DOI":"10.1371\/journal.pbio.0020104","article-title":"Genetic and functional diversification of small RNA pathways in plants","volume":"2","author":"Xie","year":"2004","journal-title":"PLoS Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib64","doi-asserted-by":"crossref","first-page":"280","DOI":"10.1104\/pp.106.084475","article-title":"Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice","volume":"142","author":"Xie","year":"2006","journal-title":"Plant Physiol."},{"key":"10.1016\/j.molp.2020.02.009_bib65","doi-asserted-by":"crossref","first-page":"750","DOI":"10.1038\/ncomms1743","article-title":"Degradation of MONOCULM 1 by APC\/C(TAD1) regulates rice tillering","volume":"3","author":"Xu","year":"2012","journal-title":"Nat. Commun."},{"key":"10.1016\/j.molp.2020.02.009_bib66","doi-asserted-by":"crossref","first-page":"178","DOI":"10.1007\/s11427-017-9199-1","article-title":"An expression atlas of miRNAs in Arabidopsis thaliana","volume":"61","author":"Xu","year":"2018","journal-title":"Sci. China Life Sci."},{"key":"10.1016\/j.molp.2020.02.009_bib67","doi-asserted-by":"crossref","first-page":"469","DOI":"10.1038\/nature19073","article-title":"DWARF14 is a non-canonical hormone receptor for strigolactone","volume":"536","author":"Yao","year":"2016","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib68","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1007\/s11427-017-9195-x","article-title":"Recent advances in molecular basis for strigolactone action","volume":"61","author":"Yao","year":"2018","journal-title":"Sci. China Life Sci."},{"key":"10.1016\/j.molp.2020.02.009_bib69","doi-asserted-by":"crossref","first-page":"859","DOI":"10.1016\/j.molcel.2012.04.013","article-title":"Cytoplasmic assembly and selective nuclear import of Arabidopsis ARGONAUTE4\/siRNA complexes","volume":"46","author":"Ye","year":"2012","journal-title":"Mol. Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib70","doi-asserted-by":"crossref","first-page":"18729","DOI":"10.1073\/pnas.1009695107","article-title":"Local DNA hypomethylation activates genes in rice endosperm","volume":"107","author":"Zemach","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.molp.2020.02.009_bib71","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1016\/j.cell.2015.09.032","article-title":"A one precursor one siRNA model for Pol IV-dependent siRNA biogenesis","volume":"163","author":"Zhai","year":"2015","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib72","doi-asserted-by":"crossref","first-page":"8290","DOI":"10.1073\/pnas.1300585110","article-title":"DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV","volume":"110","author":"Zhang","year":"2013","journal-title":"Proc. Natl. Acad. Sci. U S A"},{"key":"10.1016\/j.molp.2020.02.009_bib73","doi-asserted-by":"crossref","first-page":"14789","DOI":"10.1038\/ncomms14789","article-title":"A natural tandem array alleviates epigenetic repression of IPA1 and leads to superior yielding rice","volume":"8","author":"Zhang","year":"2017","journal-title":"Nat. Commun."},{"key":"10.1016\/j.molp.2020.02.009_bib74","doi-asserted-by":"crossref","first-page":"489","DOI":"10.1038\/s41580-018-0016-z","article-title":"Dynamics and function of DNA methylation in plants","volume":"19","author":"Zhang","year":"2018","journal-title":"Nat. Rev. Mol. Cell Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib75","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1111\/jipb.12767","article-title":"A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes","volume":"61","author":"Zhao","year":"2019","journal-title":"J. Integr. Plant Biol."},{"key":"10.1016\/j.molp.2020.02.009_bib76","doi-asserted-by":"crossref","first-page":"1050","DOI":"10.1016\/j.cell.2014.03.056","article-title":"Molecular mechanism of action of plant DRM de novo DNA methyltransferases","volume":"157","author":"Zhong","year":"2014","journal-title":"Cell"},{"key":"10.1016\/j.molp.2020.02.009_bib77","doi-asserted-by":"crossref","first-page":"406","DOI":"10.1038\/nature12878","article-title":"D14-SCFD3-dependent degradation of D53 regulates strigolactone signalling","volume":"504","author":"Zhou","year":"2013","journal-title":"Nature"},{"key":"10.1016\/j.molp.2020.02.009_bib78","doi-asserted-by":"crossref","first-page":"716","DOI":"10.1126\/science.1079695","article-title":"ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation","volume":"299","author":"Zilberman","year":"2003","journal-title":"Science"},{"key":"10.1016\/j.molp.2020.02.009_bib79","doi-asserted-by":"crossref","first-page":"687","DOI":"10.1111\/j.1365-313X.2006.02916.x","article-title":"The rice HIGH-TILLERING DWARF1 encoding an ortholog of Arabidopsis MAX3 is required for negative regulation of the outgrowth of axillary buds","volume":"48","author":"Zou","year":"2006","journal-title":"Plant J."}],"container-title":["Molecular Plant"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1674205220300393?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1674205220300393?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T12:02:38Z","timestamp":1761652958000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1674205220300393"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,6]]},"references-count":79,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2020,6]]}},"alternative-id":["S1674205220300393"],"URL":"https:\/\/doi.org\/10.1016\/j.molp.2020.02.009","relation":{},"ISSN":["1674-2052"],"issn-type":[{"value":"1674-2052","type":"print"}],"subject":[],"published":{"date-parts":[[2020,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Regulation of Rice Tillering by RNA-Directed DNA Methylation at Miniature Inverted-Repeat Transposable Elements","name":"articletitle","label":"Article Title"},{"value":"Molecular Plant","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.molp.2020.02.009","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 The Author 2020","name":"copyright","label":"Copyright"}]}}