{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T13:35:01Z","timestamp":1764682501962,"version":"3.46.0"},"reference-count":44,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2019,3,1]],"date-time":"2019-03-01T00:00:00Z","timestamp":1551398400000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis"],"published-print":{"date-parts":[[2019,3]]},"DOI":"10.1016\/j.mrfmmm.2019.01.001","type":"journal-article","created":{"date-parts":[[2019,1,4]],"date-time":"2019-01-04T18:13:09Z","timestamp":1546625589000},"page":"7-14","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"special_numbering":"C","title":["Molecular interactions and mutational impact upon rhodopsin (G90\u2192D90) for hindering dark adaptation of eye: A comparative structural level outlook for signaling mechanism in night blindness"],"prefix":"10.1016","volume":"814","author":[{"given":"Arundhati","family":"Banerjee","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sujay","family":"Ray","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"issue":"6","key":"10.1016\/j.mrfmmm.2019.01.001_bib0005","first-page":"2323","article-title":"Rhodopsin and phototransduction: a model system for G-protein linked receptors","volume":"6","author":"Paul","year":"1994","journal-title":"FASEB J."},{"issue":"10","key":"10.1016\/j.mrfmmm.2019.01.001_bib0010","doi-asserted-by":"crossref","first-page":"6519","DOI":"10.1074\/jbc.272.10.6519","article-title":"Transducin-\u03b1 C-terminal peptide binding site consists of C-D and E-F loops of rhodopsin","volume":"272","author":"Shreeta","year":"1997","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0015","first-page":"880","article-title":"Dark-light: model for nightblindness from the human rhodopsin Gly-90 \u2013\u203a asp mutation","volume":"92","author":"Paul","year":"1995","journal-title":"Med. Sci."},{"issue":"5","key":"10.1016\/j.mrfmmm.2019.01.001_bib0020","doi-asserted-by":"crossref","first-page":"3226","DOI":"10.1016\/S0021-9258(17)41852-7","article-title":"BenovicSn. Arrestin-rhodopsin interaction, multi-site binding delineated by peptide inhibition","volume":"269","author":"Jason","year":"1994","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0025","first-page":"43","article-title":"Molecular computing and structural biology for interactions in ER\u03b1 and bZIP proteins from Homo sapiens: an insight into the signal transduction in breast cancer metastasis","volume":"404","author":"Banerjee","year":"2015","journal-title":"Proceedings of the 4th International Conference on Frontiers in Intelligent Computing: Theory and Applications (FICTA), Advances in Intelligent Systems and Computing"},{"issue":"1","key":"10.1016\/j.mrfmmm.2019.01.001_bib0030","doi-asserted-by":"crossref","first-page":"72","DOI":"10.1016\/j.gene.2015.09.075","article-title":"Molecular modeling, mutational analysis and conformational switching in IL27: an in silico structural insight towards AIDS research","volume":"576","author":"Banerjee","year":"2016","journal-title":"Gene"},{"issue":"1","key":"10.1016\/j.mrfmmm.2019.01.001_bib0035","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/j.gene.2016.07.046","article-title":"Structural insight with mutational impact on tyrosinase and PKC-\u03b2 interaction from Homo sapiens: molecular modeling and docking studies for melanogenesis, albinism and increased risk for melanoma","volume":"592","author":"Banerjee","year":"2016","journal-title":"Gene"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0040","first-page":"25","article-title":"Computational molecular analysis of human rhodopsin, Transducin and arrestin interactions: an insight into signal transduction for ophthalmology","volume":"458","author":"Mukherjee","year":"2016","journal-title":"Adv. Intell. Syst. Comput."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0045","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1007\/978-1-4939-3167-5_2","article-title":"UniprotKB\/Swiss-Prot, the manually annotated section of the UniProt KnowledgeBase: how to use the entry view","volume":"1374","author":"Boutet","year":"2016","journal-title":"Methods Mol. Biol."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0050","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"25","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0055","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The protein data bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0060","doi-asserted-by":"crossref","first-page":"654","DOI":"10.1038\/366654a0","article-title":"The 2.2 \u00c5 crystal structure of transducin-alpha complexed with GTP gamma","volume":"366","author":"Noel","year":"1993","journal-title":"Nature"},{"issue":"1","key":"10.1016\/j.mrfmmm.2019.01.001_bib0065","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1002\/prot.340090107","article-title":"Database of homology-derived protein structures and the structural meaning of sequence alignment","volume":"9","author":"Sander","year":"1991","journal-title":"Proteins"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0070","doi-asserted-by":"crossref","first-page":"W590","DOI":"10.1093\/nar\/gkh477","article-title":"SuperPose: a simple server for sophisticated structural superposition","volume":"32","author":"Rajarshi","year":"2004","journal-title":"Nucleic Acids Res."},{"issue":"18","key":"10.1016\/j.mrfmmm.2019.01.001_bib0075","doi-asserted-by":"crossref","first-page":"2500","DOI":"10.1093\/bioinformatics\/btg362","article-title":"ModLoop: automated modeling of loops in protein structures","volume":"19","author":"Fiser","year":"2003","journal-title":"Bioinformatics"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0080","doi-asserted-by":"crossref","first-page":"W407","DOI":"10.1093\/nar\/gkm290","article-title":"ProSA-web: interactive web service for the recognition of errors in three-dimensional structures of proteins","volume":"35","author":"Weiderstein","year":"2007","journal-title":"Nucleic Acid Residues"},{"year":"2004","series-title":"Evolutionary Methods in Biotechnology","author":"Wiederstein","key":"10.1016\/j.mrfmmm.2019.01.001_bib0085"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0090","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1107\/S0021889892009944","article-title":"PROCHECK: a program to check the stereochemistry of protein structures","volume":"26","author":"Laskowski","year":"1993","journal-title":"J. Appl. Cryst."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0095","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1038\/381272a0","article-title":"Errors in protein structures","volume":"381","author":"Hooft","year":"1996","journal-title":"Nature"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0100","doi-asserted-by":"crossref","first-page":"396","DOI":"10.1016\/S0076-6879(97)77022-8","article-title":"VERIFY3D: assessment of protein models with three-dimensional profiles","volume":"277","author":"Eisenberg","year":"1997","journal-title":"Methods Enzymol."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0105","doi-asserted-by":"crossref","first-page":"1511","DOI":"10.1002\/pro.5560020916","article-title":"Verification of protein structures: patterns of non-bonded atomic interactions","volume":"9","author":"Colovos","year":"1993","journal-title":"Protein Sci."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0110","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1006\/jmbi.1996.0628","article-title":"Deviations from standard atomic volumes as a quality measure for protein crystal structures","volume":"264","author":"Pontius","year":"1996","journal-title":"J. Mol. Biol."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0115","doi-asserted-by":"crossref","first-page":"283","DOI":"10.1016\/S0065-3233(08)60402-7","article-title":"Conformation of polypeptides and proteins","volume":"23","author":"Ramachandran","year":"1968","journal-title":"Adv. Protein Chem."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0120","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1038\/nature14656","article-title":"Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser","volume":"523","author":"Kang","year":"2015","journal-title":"Nature"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0125","doi-asserted-by":"crossref","first-page":"1708","DOI":"10.1002\/pro.2549","article-title":"Insights into beta 2-adrenergic receptor binding from structures of the N-terminal lobe of ARRDC3","volume":"23","author":"Qi","year":"2014","journal-title":"Protein Sci."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0130","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1093\/bioinformatics\/btg371","article-title":"ClusPro: an automated docking and discrimination method for the prediction of protein complexes","volume":"20","author":"Comeau","year":"2004","journal-title":"Bioinformatics"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0135","doi-asserted-by":"crossref","first-page":"2525","DOI":"10.1016\/j.bpj.2011.10.024","article-title":"Improving the physical realism and structural accuracy of protein models by a two-step atomic level energy minimization","volume":"101","author":"Xu","year":"2011","journal-title":"Biophys. J."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0140","doi-asserted-by":"crossref","first-page":"1784","DOI":"10.1016\/j.str.2011.09.022","article-title":"Atomic-level protein structure refinement using fragment guided molecular dynamics conformation sampling","volume":"19","author":"Zhang","year":"2011","journal-title":"Structure"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0145","doi-asserted-by":"crossref","first-page":"261","DOI":"10.1002\/prot.22879","article-title":"Automated minimization of steric clashes in protein structures, PROTEINS: structure","volume":"79","author":"Ramachandran","year":"2011","journal-title":"Funct. Bioinformatics"},{"issue":"Suppl. 2","key":"10.1016\/j.mrfmmm.2019.01.001_bib0150","doi-asserted-by":"crossref","first-page":"W473","DOI":"10.1093\/nar\/gkm423","article-title":"PIC: protein interactions calculator","volume":"35","author":"Tina","year":"2007","journal-title":"Nucleic Acids Res."},{"year":"2002","series-title":"The PyMOL Molecular Graphics System","author":"DeLano","key":"10.1016\/j.mrfmmm.2019.01.001_bib0155"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0160","doi-asserted-by":"crossref","first-page":"271","DOI":"10.1107\/S0108767391012680","article-title":"A resolution sensitive procedure for comparing protein surfaces and its application to the comparison of antigen-combining sites","volume":"48","author":"Gerstein","year":"1992","journal-title":"Acta Cryst. A"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0165","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1002\/prot.21968","article-title":"Specific interactions for ab initio folding of protein terminal regions with secondary structures","volume":"72","author":"Yuedong","year":"2008","journal-title":"Proteins"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0170","doi-asserted-by":"crossref","first-page":"1212","DOI":"10.1110\/ps.033480.107","article-title":"Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions","volume":"17","author":"Yuedong","year":"2008","journal-title":"Protein Sci."},{"issue":"13","key":"10.1016\/j.mrfmmm.2019.01.001_bib0175","doi-asserted-by":"crossref","first-page":"3316","DOI":"10.1093\/nar\/gkg565","article-title":"VADAR: a web server for quantitative evaluation of protein structure quality","volume":"31","author":"Leigh","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0180","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1002\/pro.5560010605","article-title":"Electrostatic interactions in the association of proteins: an analysis of the thrombin-hirudin complex","volume":"1","author":"Karshikov","year":"1992","journal-title":"Protein Sci."},{"issue":"12","key":"10.1016\/j.mrfmmm.2019.01.001_bib0185","doi-asserted-by":"crossref","first-page":"2577","DOI":"10.1002\/bip.360221211","article-title":"Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features","volume":"22","author":"Kabsch","year":"1983","journal-title":"Biopolymers"},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0190","doi-asserted-by":"crossref","first-page":"2050","DOI":"10.1002\/pro.5560021206","article-title":"Local and nonlocal interactions in globular proteins and mechanisms of alcohol denaturation","volume":"2","author":"Thomas","year":"1993","journal-title":"Protein Sci."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0195","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1016\/0968-0004(91)90142-I","article-title":"The polypeptide 310-helix","volume":"16","author":"Toniolo","year":"1991","journal-title":"Trends Biochem. Sci."},{"issue":"26","key":"10.1016\/j.mrfmmm.2019.01.001_bib0200","doi-asserted-by":"crossref","first-page":"7761","DOI":"10.1021\/bi0155091","article-title":"Advances in determination of a high-resolution three-dimensional structure of rhodopsin, a model of G-Protein-Coupled receptors (GPCRs)","volume":"40","author":"Teller","year":"2001","journal-title":"Biochemistry"},{"issue":"6","key":"10.1016\/j.mrfmmm.2019.01.001_bib0205","doi-asserted-by":"crossref","first-page":"1145","DOI":"10.1110\/ps.0240103","article-title":"The role of \u03b1-, 310-, and \u03c0-helix in helix\u2192coil transitions","volume":"12","author":"Armen","year":"2003","journal-title":"Protein Sci."},{"key":"10.1016\/j.mrfmmm.2019.01.001_bib0210","doi-asserted-by":"crossref","first-page":"141","DOI":"10.1016\/S0065-3233(08)60334-4","article-title":"Stability of \u03b1-Helices","volume":"46","author":"Chakrabartty","year":"1995","journal-title":"Adv. Protein Chem."},{"issue":"20","key":"10.1016\/j.mrfmmm.2019.01.001_bib0215","doi-asserted-by":"crossref","first-page":"11207","DOI":"10.1073\/pnas.2034522100","article-title":"The discovery of the \u03b1-helix and \u03b2-sheet, the principal structural features of proteins","volume":"100","author":"Eisenberg","year":"2003","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"issue":"5","key":"10.1016\/j.mrfmmm.2019.01.001_bib0220","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1093\/protein\/15.5.353","article-title":"Occurrence, conformational features and amino acid propensities for the \u03c0-helix, protein engineering","volume":"15","author":"Fodje","year":"2002","journal-title":"Protein Eng. Des. Sel."}],"container-title":["Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0027510718300678?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0027510718300678?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T13:32:41Z","timestamp":1764682361000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0027510718300678"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,3]]},"references-count":44,"alternative-id":["S0027510718300678"],"URL":"https:\/\/doi.org\/10.1016\/j.mrfmmm.2019.01.001","relation":{},"ISSN":["1386-1964"],"issn-type":[{"type":"print","value":"1386-1964"}],"subject":[],"published":{"date-parts":[[2019,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Molecular interactions and mutational impact upon rhodopsin (G90\u2192D90) for hindering dark adaptation of eye: A comparative structural level outlook for signaling mechanism in night blindness","name":"articletitle","label":"Article Title"},{"value":"Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.mrfmmm.2019.01.001","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2019 Elsevier B.V. All rights reserved.","name":"copyright","label":"Copyright"}]}}