{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,7,12]],"date-time":"2024-07-12T09:21:36Z","timestamp":1720776096524},"reference-count":39,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2016,6,1]],"date-time":"2016-06-01T00:00:00Z","timestamp":1464739200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2015,11,25]],"date-time":"2015-11-25T00:00:00Z","timestamp":1448409600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000065","name":"National Institute of Neurological Disorders and Stroke","doi-asserted-by":"publisher","award":["U24 NS072026"],"award-info":[{"award-number":["U24 NS072026"]}],"id":[{"id":"10.13039\/100000065","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000049","name":"National Institute on Aging","doi-asserted-by":"publisher","award":["P30 AG19610"],"award-info":[{"award-number":["P30 AG19610"]}],"id":[{"id":"10.13039\/100000049","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100007306","name":"Arizona Department of Health Services","doi-asserted-by":"publisher","award":["211002"],"award-info":[{"award-number":["211002"]}],"id":[{"id":"10.13039\/100007306","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100008335","name":"Arizona Biomedical Research Commission","doi-asserted-by":"publisher","award":["4001","0011","05-901","1001"],"award-info":[{"award-number":["4001","0011","05-901","1001"]}],"id":[{"id":"10.13039\/100008335","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000864","name":"Michael J. Fox Foundation for Parkinson's Research","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000864","id-type":"DOI","asserted-by":"publisher"}]},{"name":"NIH","award":["R01 AG036400"],"award-info":[{"award-number":["R01 AG036400"]}]},{"name":"AARC DHS","award":["FY 2012"],"award-info":[{"award-number":["FY 2012"]}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Neuroepigenetics"],"published-print":{"date-parts":[[2016,6]]},"DOI":"10.1016\/j.nepig.2016.03.001","type":"journal-article","created":{"date-parts":[[2016,3,17]],"date-time":"2016-03-17T14:01:56Z","timestamp":1458223316000},"page":"1-9","update-policy":"http:\/\/dx.doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Novel method to ascertain chromatin accessibility at specific genomic loci from frozen brain homogenates and laser capture microdissected defined cells"],"prefix":"10.1016","volume":"6","author":[{"given":"Elaine","family":"Delvaux","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Diego","family":"Mastroeni","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jennifer","family":"Nolz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Paul D.","family":"Coleman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.nepig.2016.03.001_bb0005","doi-asserted-by":"crossref","DOI":"10.1186\/1756-8935-7-18","article-title":"PAT-ChIP coupled with laser microdissection allows the study of chromatin in selected cell populations from paraffin-embedded patient samples","volume":"7","author":"Amatori","year":"2014","journal-title":"Epigenetics Chromatin"},{"issue":"7561","key":"10.1016\/j.nepig.2016.03.001_bb0010","doi-asserted-by":"crossref","first-page":"486","DOI":"10.1038\/nature14590","article-title":"Single-cell chromatin accessibility reveals principles of regulatory variation","volume":"523","author":"Buenrostro","year":"2015","journal-title":"Nature"},{"issue":"1","key":"10.1016\/j.nepig.2016.03.001_bb0015","doi-asserted-by":"crossref","first-page":"777","DOI":"10.15252\/msb.20145776","article-title":"A high-throughput ChIP-seq for large-scale chromatin studies","volume":"11","author":"Chabbert","year":"2015","journal-title":"Mol. Syst. Biol."},{"issue":"9","key":"10.1016\/j.nepig.2016.03.001_bb0020","doi-asserted-by":"crossref","first-page":"2091","DOI":"10.1016\/j.neurobiolaging.2013.02.021","article-title":"Consistent decrease in global DNA methylation and hydroxymethylation in the hippocampus of Alzheimer's disease patients","volume":"34","author":"Chouliaras","year":"2013","journal-title":"Neurobiol. Aging"},{"issue":"5558","key":"10.1016\/j.nepig.2016.03.001_bb0025","doi-asserted-by":"crossref","first-page":"1306","DOI":"10.1126\/science.1067799","article-title":"Capturing chromosome conformation","volume":"295","author":"Dekker","year":"2002","journal-title":"Science"},{"issue":"50","key":"10.1016\/j.nepig.2016.03.001_bb0030","doi-asserted-by":"crossref","first-page":"21535","DOI":"10.1073\/pnas.1007647107","article-title":"Pathology tissue-chromatin immunoprecipitation, coupled with high-throughput sequencing, allows the epigenetic profiling of patient samples","volume":"107","author":"Fanelli","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"issue":"12","key":"10.1016\/j.nepig.2016.03.001_bb0035","doi-asserted-by":"crossref","first-page":"1905","DOI":"10.1038\/nprot.2011.406","article-title":"Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue","volume":"6","author":"Fanelli","year":"2011","journal-title":"Nat. Protoc."},{"issue":"12","key":"10.1016\/j.nepig.2016.03.001_bb0040","doi-asserted-by":"crossref","first-page":"e29144","DOI":"10.1371\/journal.pone.0029144","article-title":"Chromatin remodeling, cell proliferation and cell death in valproic acid-treated HeLa cells","volume":"6","author":"Felisbino","year":"2011","journal-title":"PLoS One"},{"issue":"11","key":"10.1016\/j.nepig.2016.03.001_bb0045","first-page":"1937","article-title":"Changes in chromatin structure in NIH 3T3 cells induced by valproic acid and trichostatin A","volume":"115","author":"Felisbino","year":"2014","journal-title":"J. Cell. Biochem."},{"issue":"7269","key":"10.1016\/j.nepig.2016.03.001_bb0050","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1038\/nature08497","article-title":"An oestrogen-receptor-alpha\u2013bound human chromatin interactome","volume":"462","author":"Fullwood","year":"2009","journal-title":"Nature"},{"issue":"14","key":"10.1016\/j.nepig.2016.03.001_bb0055","doi-asserted-by":"crossref","first-page":"4275","DOI":"10.1073\/pnas.81.14.4275","article-title":"Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes","volume":"81","author":"Gilmour","year":"1984","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"issue":"8","key":"10.1016\/j.nepig.2016.03.001_bb0060","doi-asserted-by":"crossref","first-page":"2009","DOI":"10.1128\/MCB.5.8.2009","article-title":"In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster","volume":"5","author":"Gilmour","year":"1985","journal-title":"Mol. Cell. Biol."},{"issue":"1","key":"10.1016\/j.nepig.2016.03.001_bb0065","doi-asserted-by":"crossref","DOI":"10.1186\/1756-8935-5-10","article-title":"Rapid genome-scale mapping of chromatin accessibility in tissue","volume":"5","author":"Gr\u00f8ntved","year":"2012","journal-title":"Epigenetics Chromatin"},{"key":"10.1016\/j.nepig.2016.03.001_bb0070","doi-asserted-by":"crossref","first-page":"3993","DOI":"10.1523\/JNEUROSCI.20-11-03993.2000","article-title":"Inhibition of activity-dependent arc protein expression in the rat hippocampus impairs maintenance of long-term potentiation and the consolidation of long-term memory","volume":"20","author":"Guzowski","year":"2000","journal-title":"J. Neurosci."},{"issue":"1","key":"10.1016\/j.nepig.2016.03.001_bb0075","doi-asserted-by":"crossref","first-page":"38","DOI":"10.1016\/j.jneumeth.2008.04.002","article-title":"A fast carrier chromatin immunoprecipitation method applicable to microdissected tissue samples","volume":"172","author":"Hao","year":"2008","journal-title":"J. Neurosci. Methods"},{"issue":"1","key":"10.1016\/j.nepig.2016.03.001_bb0080","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1038\/nmeth.2762","article-title":"Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification","volume":"11","author":"He","year":"2014","journal-title":"Nat. Methods"},{"issue":"2","key":"10.1016\/j.nepig.2016.03.001_bb0085","doi-asserted-by":"crossref","first-page":"205","DOI":"10.1038\/ng.2871","article-title":"Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment","volume":"46","author":"Hughes","year":"2014","journal-title":"Nat. Genet."},{"key":"10.1016\/j.nepig.2016.03.001_bb0090","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1038\/ng1089","article-title":"Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals","volume":"33","author":"Jaenisch","year":"2003","journal-title":"Nat. Genet."},{"issue":"1","key":"10.1016\/j.nepig.2016.03.001_bb0095","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1615\/CritRevEukarGeneExpr.v10.i1.20","article-title":"Understanding \u201cactive\u201d chromatin: a historical perspective of chromatin remodeling","volume":"10","author":"Krebs","year":"2000","journal-title":"Crit. Rev. Eukaryot. Gene Expr."},{"issue":"12","key":"10.1016\/j.nepig.2016.03.001_bb0100","doi-asserted-by":"crossref","first-page":"4742","DOI":"10.1073\/pnas.71.12.4742","article-title":"Actin is the naturally occurring inhibitor of deoxyribonuclease I","volume":"71","author":"Lazarides","year":"1974","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.nepig.2016.03.001_bb0105","doi-asserted-by":"crossref","DOI":"10.1186\/1471-2164-14-553","article-title":"Characterization of constitutive CTCF\/cohesin loci: a possible role in establishing topological domains in mammalian genomes","volume":"14","author":"Li","year":"2013","journal-title":"BMC Genomics"},{"issue":"6","key":"10.1016\/j.nepig.2016.03.001_bb0110","doi-asserted-by":"crossref","first-page":"958","DOI":"10.1016\/j.cell.2008.01.018","article-title":"FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription","volume":"132","author":"Lupien","year":"2008","journal-title":"Cell"},{"issue":"9","key":"10.1016\/j.nepig.2016.03.001_bb0115","doi-asserted-by":"crossref","first-page":"3815","DOI":"10.1158\/0008-5472.CAN-04-2478","article-title":"Valproic acid alters chromatin structure by regulation of chromatin modulation proteins","volume":"65","author":"Marchion","year":"2005","journal-title":"Cancer Res."},{"issue":"7","key":"10.1016\/j.nepig.2016.03.001_bb0120","doi-asserted-by":"crossref","first-page":"1161","DOI":"10.1016\/j.neurobiolaging.2010.08.017","article-title":"Epigenetic mechanisms in Alzheimer's disease","volume":"32","author":"Mastroeni","year":"2011","journal-title":"Neurobiol. Aging"},{"issue":"9","key":"10.1016\/j.nepig.2016.03.001_bb0125","doi-asserted-by":"crossref","first-page":"1711","DOI":"10.1101\/gr.135129.111","article-title":"Predicting cell-type-specific gene expression from regions of open chromatin","volume":"22","author":"Natarajan","year":"2012","journal-title":"Genome Res."},{"issue":"3","key":"10.1016\/j.nepig.2016.03.001_bb0130","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1016\/S0968-0004(99)01535-2","article-title":"Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation","volume":"25","author":"Orlando","year":"2000","journal-title":"Trends Biochem. Sci."},{"issue":"11","key":"10.1016\/j.nepig.2016.03.001_bb0135","doi-asserted-by":"crossref","first-page":"1563","DOI":"10.1016\/j.bcp.2006.06.016","article-title":"Chromatin structure and epigenetics","volume":"72","author":"Quina","year":"2006","journal-title":"Biochem. Pharmacol."},{"issue":"8","key":"10.1016\/j.nepig.2016.03.001_bb0140","doi-asserted-by":"crossref","first-page":"4494","DOI":"10.4049\/jimmunol.167.8.4494","article-title":"Chromatin remodeling, measured by a novel real-time polymerase chain reaction assay, across the proximal promoter region of the IL-2 gene","volume":"167","author":"Rao","year":"2001","journal-title":"J. Immunol."},{"issue":"7","key":"10.1016\/j.nepig.2016.03.001_bb0145","doi-asserted-by":"crossref","first-page":"1335","DOI":"10.1038\/nprot.2012.071","article-title":"Sensitive detection of chromatin coassociations using enhanced chromosome conformation capture on chip","volume":"7","author":"Sexton","year":"2012","journal-title":"Nat. Protoc."},{"issue":"4","key":"10.1016\/j.nepig.2016.03.001_bb0150","doi-asserted-by":"crossref","first-page":"651","DOI":"10.3390\/genes3040651","article-title":"Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays","volume":"3","author":"Sheffield","year":"2012","journal-title":"Genes"},{"key":"10.1016\/j.nepig.2016.03.001_bb0155","series-title":"The Integrative Action of the Nervous System. CUP Archive","author":"Sherrington","year":"1906"},{"issue":"2","key":"10.1016\/j.nepig.2016.03.001_bb0160","doi-asserted-by":"crossref","DOI":"10.1101\/pdb.prot5384","article-title":"DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells","author":"Song","year":"2010","journal-title":"Cold Spring Harb. Protoc."},{"issue":"26","key":"10.1016\/j.nepig.2016.03.001_bb0165","doi-asserted-by":"crossref","first-page":"22354","DOI":"10.1074\/jbc.M112.376491","article-title":"Balancing arc synthesis, mRNA decay, and proteasomal degradation: maximal protein expression triggered by rapid eye movement sleep-like bursts of muscarinic cholinergic receptor stimulation","volume":"287","author":"Soul\u00e9","year":"2012","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.nepig.2016.03.001_bb0170","doi-asserted-by":"crossref","DOI":"10.1186\/1756-8935-7-7","article-title":"ChIP-less analysis of chromatin states","volume":"7","author":"Su","year":"2014","journal-title":"Epigenetics Chromatin"},{"issue":"10","key":"10.1016\/j.nepig.2016.03.001_bb0175","doi-asserted-by":"crossref","first-page":"R88","DOI":"10.1186\/gb-2012-13-10-r88","article-title":"Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity","volume":"13","author":"Tewari","year":"2012","journal-title":"Genome Biol."},{"issue":"7414","key":"10.1016\/j.nepig.2016.03.001_bb0180","doi-asserted-by":"crossref","first-page":"75","DOI":"10.1038\/nature11232","article-title":"The accessible chromatin landscape of the human genome","volume":"489","author":"Thurman","year":"2012","journal-title":"Nature"},{"issue":"9","key":"10.1016\/j.nepig.2016.03.001_bb0185","doi-asserted-by":"crossref","first-page":"e44690","DOI":"10.1371\/journal.pone.0044690","article-title":"Direct chromatin PCR (DC-PCR): hypotonic conditions allow differentiation of chromatin states during thermal cycling","volume":"7","author":"Vatolin","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.nepig.2016.03.001_bb0190","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1016\/S0140-6736(94)92338-8","article-title":"Differences in the pattern of hippocampal neuronal loss in normal ageing and Alzheimer's disease","volume":"344","author":"West","year":"1994","journal-title":"Lancet"},{"issue":"8","key":"10.1016\/j.nepig.2016.03.001_bb0195","doi-asserted-by":"crossref","first-page":"748","DOI":"10.1038\/nbt.2642","article-title":"Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments","volume":"31","author":"Wills","year":"2013","journal-title":"Nat. Biotechnol."}],"container-title":["Neuroepigenetics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2214784515300128?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2214784515300128?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2019,9,5]],"date-time":"2019-09-05T16:58:21Z","timestamp":1567702701000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2214784515300128"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,6]]},"references-count":39,"alternative-id":["S2214784515300128"],"URL":"https:\/\/doi.org\/10.1016\/j.nepig.2016.03.001","relation":{},"ISSN":["2214-7845"],"issn-type":[{"value":"2214-7845","type":"print"}],"subject":[],"published":{"date-parts":[[2016,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Novel method to ascertain chromatin accessibility at specific genomic loci from frozen brain homogenates and laser capture microdissected defined cells","name":"articletitle","label":"Article Title"},{"value":"Neuroepigenetics","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.nepig.2016.03.001","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2016 The Authors. Published by Elsevier Inc.","name":"copyright","label":"Copyright"}]}}