{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,7,12]],"date-time":"2024-07-12T03:21:13Z","timestamp":1720754473589},"reference-count":57,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2016,3,1]],"date-time":"2016-03-01T00:00:00Z","timestamp":1456790400000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2016,1,6]],"date-time":"2016-01-06T00:00:00Z","timestamp":1452038400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100007356","name":"Fondation M\u00e9diterran\u00e9e Infection","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007356","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":["New Microbes and New Infections"],"published-print":{"date-parts":[[2016,3]]},"DOI":"10.1016\/j.nmni.2016.01.001","type":"journal-article","created":{"date-parts":[[2016,1,9]],"date-time":"2016-01-09T07:30:19Z","timestamp":1452324619000},"page":"47-57","source":"Crossref","is-referenced-by-count":6,"special_numbering":"C","title":["Noncontiguous finished genome sequence and description of Nocardioides massiliensis sp. nov. GD13T"],"prefix":"10.1016","volume":"10","author":[{"given":"G.","family":"Dubourg","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"S.A.","family":"Sankar","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J.","family":"Rathored","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J.-C.","family":"Lagier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C.","family":"Robert","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C.","family":"Couderc","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"L.","family":"Papazian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"D.","family":"Raoult","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P.-E.","family":"Fournier","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.nmni.2016.01.001_bib1","doi-asserted-by":"crossref","first-page":"1185","DOI":"10.1111\/1469-0691.12023","article-title":"Microbial culturomics: paradigm shift in the human gut microbiome study","volume":"18","author":"Lagier","year":"2012","journal-title":"Clin Microbiol Infect"},{"key":"10.1016\/j.nmni.2016.01.001_bib2","doi-asserted-by":"crossref","first-page":"117","DOI":"10.1016\/j.ijantimicag.2014.04.020","article-title":"Culturomics and pyrosequencing evidence of the reduction in gut microbiota diversity in patients with broad-spectrum antibiotics","volume":"4","author":"Dubourg","year":"2014","journal-title":"Int J Antimicrob Agents"},{"key":"10.1016\/j.nmni.2016.01.001_bib3","doi-asserted-by":"crossref","first-page":"249","DOI":"10.1099\/ijs.0.016949-0","article-title":"Notes on the characterization of prokaryote strains for taxonomic purposes","volume":"60","author":"Tindall","year":"2010","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.nmni.2016.01.001_bib4","first-page":"152","article-title":"Taxonomic parameters revisited: tarnished gold standards","volume":"33","author":"Stackebrandt","year":"2006","journal-title":"Microbiol Today"},{"issue":"Pt 3","key":"10.1016\/j.nmni.2016.01.001_bib5","first-page":"1043","article-title":"Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology","volume":"52","author":"Stackebrandt","year":"2002","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.nmni.2016.01.001_bib6","series-title":"Molecular identification, systematics, and population structure of Prokaryotes","first-page":"23","article-title":"DNA-DNA reassociation methods applied to microbial taxonomy and their critical evaluation","author":"Rossell\u00f3-M\u00f3ra","year":"2006"},{"key":"10.1016\/j.nmni.2016.01.001_bib7","doi-asserted-by":"crossref","first-page":"384","DOI":"10.1099\/ijs.0.057091-0","article-title":"A\u00a0polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species","volume":"64","author":"Ramasamy","year":"2014","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.nmni.2016.01.001_bib8","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1016\/j.anaerobe.2015.10.011","article-title":"From culturomics to taxonomogenomics: a need to change the taxonomy of prokaryotes in clinical microbiology","volume":"36","author":"Fournier","year":"2015","journal-title":"Anaerobe"},{"key":"10.1016\/j.nmni.2016.01.001_bib9","doi-asserted-by":"crossref","first-page":"116","DOI":"10.4056\/sigs.2415480","article-title":"Non-contiguous finished genome sequence and description of Anaerococcus senegalensis sp. nov","volume":"6","author":"Lagier","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib10","doi-asserted-by":"crossref","first-page":"315","DOI":"10.4056\/sigs.2685971","article-title":"Non-contiguous finished genome sequence and description of Alistipes timonensis sp. nov","volume":"6","author":"Lagier","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib11","first-page":"386","article-title":"Non-contiguous finished genome sequence and description of Clostridium senegalense sp. nov","volume":"6","author":"Mishra","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib12","doi-asserted-by":"crossref","first-page":"1","DOI":"10.4056\/sigs.2956294","article-title":"Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov","volume":"7","author":"Mishra","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib13","doi-asserted-by":"crossref","first-page":"70","DOI":"10.4056\/sigs.3054650","article-title":"Non-contiguous finished genome sequence and description of Paenibacillus senegalensis sp. nov","volume":"7","author":"Mishra","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib14","doi-asserted-by":"crossref","first-page":"200","DOI":"10.4056\/sigs.3086474","article-title":"Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov","volume":"7","author":"Lagier","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib15","doi-asserted-by":"crossref","first-page":"221","DOI":"10.4056\/sigs.3206554","article-title":"Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov","volume":"7","author":"Roux","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib16","doi-asserted-by":"crossref","first-page":"233","DOI":"10.4056\/sigs.3256677","article-title":"Non-contiguous finished genome sequence and description of Brevibacterium senegalense sp. nov","volume":"7","author":"Kokcha","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib17","doi-asserted-by":"crossref","first-page":"246","DOI":"10.4056\/sigs.3306717","article-title":"Genome sequence and description of Aeromicrobium massiliense sp. nov","volume":"7","author":"Ramasamy","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib18","doi-asserted-by":"crossref","first-page":"258","DOI":"10.4056\/sigs.3316719","article-title":"Non contiguous-finished genome sequence and description of Cellulomonas massiliensis sp. nov","volume":"7","author":"Lagier","year":"2012","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib19","doi-asserted-by":"crossref","first-page":"343","DOI":"10.4056\/sigs.3246665","article-title":"Non contiguous-finished genome sequence and description of Senegalemassilia anaerobia gen. nov., sp. nov","volume":"7","author":"Lagier","year":"2013","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib20","doi-asserted-by":"crossref","first-page":"399","DOI":"10.4056\/sigs.3396830","article-title":"Non contiguous-finished genome sequence and description of Enterobacter massiliensis sp. nov","volume":"7","author":"Lagier","year":"2013","journal-title":"Stand Genomic Sci"},{"key":"10.1016\/j.nmni.2016.01.001_bib21","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1099\/00207713-26-1-58","article-title":"Nocardioides, a new genus of the order Actinomycetales","volume":"26","author":"Prauser","year":"1976","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib22","doi-asserted-by":"crossref","first-page":"647","DOI":"10.1002\/jobm.3630240914","article-title":"Nocardioides luteus spec. nov","volume":"24","author":"Prauser","year":"1984","journal-title":"Zeitschr Allgem Microbiol"},{"key":"10.1016\/j.nmni.2016.01.001_bib23","doi-asserted-by":"crossref","first-page":"1280","DOI":"10.1099\/ijs.0.043885-0","article-title":"Nocardioides albertanoniae sp. nov., isolated from Roman catacombs","volume":"63","author":"Alias-Villegas","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib24","doi-asserted-by":"crossref","first-page":"3800","DOI":"10.1099\/ijs.0.051037-0","article-title":"Nocardioides salsibiostraticola sp. nov., isolated from biofilm formed in coastal seawater","volume":"63","author":"Cho","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib25","doi-asserted-by":"crossref","first-page":"2594","DOI":"10.1099\/ijs.0.047902-0","article-title":"Nocardioides marinquilinus sp. nov., isolated from coastal seawater","volume":"63","author":"Cho","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib26","doi-asserted-by":"crossref","first-page":"1068","DOI":"10.1099\/ijs.0.044982-0","article-title":"Nocardioides perillae sp. nov., isolated from surface-sterilized roots of Perilla frutescens","volume":"63","author":"Du","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib27","doi-asserted-by":"crossref","first-page":"4730","DOI":"10.1099\/ijs.0.054619-0","article-title":"Nocardioides endophyticus sp. nov. and Nocardioides conyzicola sp. nov., isolated from herbaceous plant roots","volume":"63","author":"Han","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib28","doi-asserted-by":"crossref","first-page":"1385","DOI":"10.1007\/s10482-013-9919-z","article-title":"Nocardioides panaciterrulae sp. nov., isolated from soil of a ginseng field, with ginsenoside converting activity","volume":"103","author":"Kim","year":"2013","journal-title":"Antonie van Leeuwenhoek"},{"key":"10.1016\/j.nmni.2016.01.001_bib29","doi-asserted-by":"crossref","first-page":"129","DOI":"10.1099\/ijs.0.038091-0","article-title":"Nocardioides szechwanensis sp. nov. and Nocardioides psychrotolerans sp. nov., isolated from a glacier","volume":"63","author":"Liu","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib30","doi-asserted-by":"crossref","first-page":"3727","DOI":"10.1099\/ijs.0.047043-0","article-title":"Nocardioides daeguensis sp. nov., a nitrate-reducing bacterium isolated from activated sludge of an industrial wastewater treatment plant","volume":"63","author":"Cui","year":"2013","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib31","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1099\/00207713-39-1-1","article-title":"Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov","volume":"39","author":"Collins","year":"1989","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib32","doi-asserted-by":"crossref","first-page":"2217","DOI":"10.1099\/ijs.0.059873-0","article-title":"Nocardioides pacificus sp. nov., isolated from deep sub-seafloor sediment of South Pacific Gyre","volume":"64","author":"Fan","year":"2014","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib33","doi-asserted-by":"crossref","first-page":"2491","DOI":"10.1099\/ijs.0.061481-0","article-title":"Nocardioides zeae sp. nov., isolated from the stem of Zea mays","volume":"64","author":"Glaeser","year":"2014","journal-title":"Int J Syst Bacteriol"},{"issue":"4","key":"10.1016\/j.nmni.2016.01.001_bib34","doi-asserted-by":"crossref","first-page":"2094","DOI":"10.1099\/ijs.0.060400-0","article-title":"Nocardioides opuntiae sp. nov., isolated from a soil of cactus","author":"Lee","year":"2014","journal-title":"Int J Syst Bacteriol"},{"issue":"pt 8","key":"10.1016\/j.nmni.2016.01.001_bib35","doi-asserted-by":"crossref","first-page":"2718","DOI":"10.1099\/ijs.0.062851-0","article-title":"Nocardioides nanhaiensis sp. nov., an actinobacterium isolated from a marine sediment sample","volume":"64","author":"Zhang","year":"2014","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib36","doi-asserted-by":"crossref","first-page":"1017","DOI":"10.1007\/s10482-014-0161-0","article-title":"Nocardioides rubroscoriae sp. nov., isolated from volcanic ash","volume":"105","author":"Lee","year":"2014","journal-title":"Antonie van Leeuwenhoek"},{"key":"10.1016\/j.nmni.2016.01.001_bib37","doi-asserted-by":"crossref","first-page":"4576","DOI":"10.1073\/pnas.87.12.4576","article-title":"Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya","volume":"87","author":"Woese","year":"1990","journal-title":"Proc Natl Acad Sci U S A"},{"key":"10.1016\/j.nmni.2016.01.001_bib38","series-title":"Bergey\u2019s manual of systematic bacteriology","first-page":"119","article-title":"The road map to the manual","volume":"vol. 1","author":"Garrity","year":"2001"},{"key":"10.1016\/j.nmni.2016.01.001_bib39","doi-asserted-by":"crossref","first-page":"479","DOI":"10.1099\/00207713-47-2-479","article-title":"Proposal for a new hierarchic classification system, Actinobacteria classis nov","volume":"47","author":"Stackebrandt","year":"1997","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib40","doi-asserted-by":"crossref","first-page":"225","DOI":"10.1099\/00207713-30-1-225","article-title":"Approved lists of bacterial names","volume":"30","author":"Skerman","year":"1980","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib41","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1128\/JB.2.2.155-164.1917","article-title":"Studies in the nomenclature and classification of bacteria. II. The primary subdivisions of the Schizomycetes","volume":"2","author":"Buchanan","year":"1917","journal-title":"J\u00a0Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib42","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1099\/ijs.0.65780-0","article-title":"An update of the structure and 16S rRNA gene sequence\u2013based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa","volume":"59","author":"Zhi","year":"2009","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.nmni.2016.01.001_bib43","first-page":"3","article-title":"Nocardioidaceae fam. nov., a new family of the order Actinomycetales Buchanan 1917","volume":"47","author":"Nesterenko","year":"1985","journal-title":"Mikrobiol Zh"},{"key":"10.1016\/j.nmni.2016.01.001_bib44","first-page":"320","article-title":"Validation list no. 34","volume":"40","year":"1990","journal-title":"Int J Syst Bacteriol"},{"key":"10.1016\/j.nmni.2016.01.001_bib45","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat Genet"},{"key":"10.1016\/j.nmni.2016.01.001_bib46","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1086\/600885","article-title":"Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry","volume":"49","author":"Seng","year":"2009","journal-title":"Clin Infect Dis"},{"key":"10.1016\/j.nmni.2016.01.001_bib47","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1038\/nbt1360","article-title":"The minimum information about a genome sequence (MIGS) specification","volume":"26","author":"Field","year":"2008","journal-title":"Nat Biotechnol"},{"key":"10.1016\/j.nmni.2016.01.001_bib48","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1186\/1471-2105-11-119","article-title":"Prodigal: prokaryotic gene recognition and translation initiation site identification","volume":"11","author":"Hyatt","year":"2010","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.nmni.2016.01.001_bib49","doi-asserted-by":"crossref","first-page":"D48","DOI":"10.1093\/nar\/gkr1202","article-title":"GenBank","volume":"40","author":"Benson","year":"2012","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.nmni.2016.01.001_bib50","doi-asserted-by":"crossref","first-page":"955","DOI":"10.1093\/nar\/25.5.0955","article-title":"tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence","volume":"25","author":"Lowe","year":"1997","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.nmni.2016.01.001_bib51","doi-asserted-by":"crossref","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: consistent and rapid annotation of ribosomal RNA genes","volume":"35","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.nmni.2016.01.001_bib52","doi-asserted-by":"crossref","first-page":"783","DOI":"10.1016\/j.jmb.2004.05.028","article-title":"Improved prediction of signal peptides: SignalP 3.0","volume":"340","author":"Bendtsen","year":"2004","journal-title":"J\u00a0Mol Biol"},{"key":"10.1016\/j.nmni.2016.01.001_bib53","doi-asserted-by":"crossref","first-page":"567","DOI":"10.1006\/jmbi.2000.4315","article-title":"Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes","volume":"305","author":"Krogh","year":"2001","journal-title":"J\u00a0Mol Biol"},{"key":"10.1016\/j.nmni.2016.01.001_bib54","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1186\/1471-2105-12-124","article-title":"Proteinortho: detection of (co-)orthologs in large-scale analysis","volume":"12","author":"Lechner","year":"2011","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.nmni.2016.01.001_bib55","doi-asserted-by":"crossref","first-page":"944","DOI":"10.1093\/bioinformatics\/16.10.944","article-title":"Artemis: sequence visualization and annotation","volume":"16","author":"Rutherford","year":"2000","journal-title":"Bioinformatics"},{"key":"10.1016\/j.nmni.2016.01.001_bib56","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1093\/bioinformatics\/btn578","article-title":"DNAPlotter: circular and linear interactive genome visualization","volume":"25","author":"Carver","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.nmni.2016.01.001_bib57","doi-asserted-by":"crossref","first-page":"1394","DOI":"10.1101\/gr.2289704","article-title":"Mauve: multiple alignment of conserved genomic sequence with rearrangements","volume":"14","author":"Darling","year":"2004","journal-title":"Genome Res"}],"container-title":["New Microbes and New Infections"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2052297516000032?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2052297516000032?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,6,13]],"date-time":"2024-06-13T18:25:24Z","timestamp":1718303124000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2052297516000032"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,3]]},"references-count":57,"alternative-id":["S2052297516000032"],"URL":"https:\/\/doi.org\/10.1016\/j.nmni.2016.01.001","relation":{},"ISSN":["2052-2975"],"issn-type":[{"value":"2052-2975","type":"print"}],"subject":[],"published":{"date-parts":[[2016,3]]}}}