{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,4]],"date-time":"2026-08-04T05:02:48Z","timestamp":1785819768298,"version":"3.56.0"},"reference-count":47,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,6,1]],"date-time":"2025-06-01T00:00:00Z","timestamp":1748736000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,4,30]],"date-time":"2025-04-30T00:00:00Z","timestamp":1745971200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100018811","name":"University of La Rioja","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100018811","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100014440","name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100014440","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100008530","name":"European Regional Development Fund","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100008530","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["One Health"],"published-print":{"date-parts":[[2025,6]]},"DOI":"10.1016\/j.onehlt.2025.101058","type":"journal-article","created":{"date-parts":[[2025,5,24]],"date-time":"2025-05-24T11:04:13Z","timestamp":1748084653000},"page":"101058","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Interplay between bacterial clones and plasmids in the spread of blaSHV-12- and blaCTX-M-14-carrying Escherichia coli from the livestock environment"],"prefix":"10.1016","volume":"20","author":[{"given":"Sandra","family":"Mart\u00ednez-\u00c1lvarez","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susana","family":"Sanz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pierre","family":"Ch\u00e2tre","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mar\u00eda","family":"de Toro","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carmen","family":"Olarte","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pauline","family":"Fran\u00e7ois","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Isabel","family":"Benito","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Minerva","family":"Viguera","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Myriam","family":"Zarazaga","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jean-Yves","family":"Madec","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Marisa","family":"Haenni","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carmen","family":"Torres","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.onehlt.2025.101058_bb0005","author":"O'Neill"},{"key":"10.1016\/j.onehlt.2025.101058_bb0010","series-title":"Critically Important Antimicrobials for Human Medicine, 6th Revision","author":"WHO","year":"2019"},{"issue":"1","key":"10.1016\/j.onehlt.2025.101058_bb0015","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1093\/jac\/dkaa399","article-title":"The global prevalence and trend of human intestinal carriage of ESBL-producing Escherichia coli in the community","volume":"76","author":"Bezabih","year":"2021","journal-title":"J. Antimicrob. Chemother."},{"issue":"4","key":"10.1016\/j.onehlt.2025.101058_bb0020","doi-asserted-by":"crossref","first-page":"444","DOI":"10.3390\/antibiotics11040444","article-title":"Antimicrobial resistance in Escherichia coli from the broiler farm environment, with detection of SHV-12-producing isolates","volume":"11","author":"Mart\u00ednez-\u00c1lvarez","year":"2022","journal-title":"Antibiotics"},{"key":"10.1016\/j.onehlt.2025.101058_bb0025","doi-asserted-by":"crossref","DOI":"10.1016\/j.ecoenv.2024.116145","article-title":"Unexpected role of pig nostrils in the clonal and plasmidic dissemination of extended-spectrum beta-lactamase-producing Escherichia coli at farm level","volume":"273","author":"Mart\u00ednez-\u00c1lvarez","year":"2024","journal-title":"Ecotoxicol. Environ. Saf."},{"issue":"6","key":"10.1016\/j.onehlt.2025.101058_bb0030","doi-asserted-by":"crossref","first-page":"1589","DOI":"10.1093\/jac\/dkx024","article-title":"Analysis of blaSHV-12-carrying Escherichia coli clones and plasmids from human, animal and food sources","volume":"72","author":"Alonso","year":"2017","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.onehlt.2025.101058_bb0035","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1016\/j.jgar.2023.07.011","article-title":"Detection and genetic characterization of blaESBL-carrying plasmids of cloacal Escherichia coli isolates from white stork nestlings (Ciconia ciconia) in Spain","volume":"34","author":"Mart\u00ednez-\u00c1lvarez","year":"2023","journal-title":"J. Glob. Antimicrob. Resist."},{"issue":"9","key":"10.1016\/j.onehlt.2025.101058_bb0040","doi-asserted-by":"crossref","first-page":"5358","DOI":"10.1128\/AAC.02545-14","article-title":"High prevalence of blaCTX-M-1\/IncI1\/ST3 and blaCMY-2\/IncI1\/ST2 plasmids in healthy urban dogs in France","volume":"58","author":"Haenni","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"12","key":"10.1016\/j.onehlt.2025.101058_bb0045","article-title":"Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages","volume":"10","author":"de Beez","year":"2014","journal-title":"PLoS Genet."},{"issue":"3","key":"10.1016\/j.onehlt.2025.101058_bb0050","doi-asserted-by":"crossref","first-page":"1262","DOI":"10.1128\/AAC.49.3.1262-1264.2005","article-title":"Monitoring and characterization of extended-spectrum beta-lactamases in Escherichia coli strains from healthy and sick animals in Spain in 2003","volume":"49","author":"Bri\u00f1as","year":"2005","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.onehlt.2025.101058_bb0055","doi-asserted-by":"crossref","first-page":"1776","DOI":"10.4315\/0362-028X.JFP-18-098","article-title":"Identification of enterococci, staphylococci, and Enterobacteriaceae from slurries and air in and around two pork farms","volume":"81","author":"Sanz","year":"2018","journal-title":"J. Food Prot."},{"issue":"6","key":"10.1016\/j.onehlt.2025.101058_bb0060","doi-asserted-by":"crossref","first-page":"1783","DOI":"10.3390\/ani11061783","article-title":"Airborne dissemination of Bacteria (enterococci, staphylococci and Enterobacteriaceae) in a modern broiler farm and its environment","volume":"11","author":"Sanz","year":"2021","journal-title":"Animals"},{"issue":"15","key":"10.1016\/j.onehlt.2025.101058_bb0065","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"issue":"13","key":"10.1016\/j.onehlt.2025.101058_bb0070","doi-asserted-by":"crossref","first-page":"142","DOI":"10.1093\/bioinformatics\/bty266","article-title":"Versatile genome assembly evaluation with QUAST-LG","volume":"34","author":"Mikheenko","year":"2018","journal-title":"Bioinformatics"},{"issue":"11","key":"10.1016\/j.onehlt.2025.101058_bb0075","article-title":"Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification","volume":"7","author":"Schwengers","year":"2021","journal-title":"Microb. Genom."},{"issue":"4","key":"10.1016\/j.onehlt.2025.101058_bb0080","doi-asserted-by":"crossref","first-page":"464","DOI":"10.1093\/bioinformatics\/btr703","article-title":"Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data","volume":"28","author":"Carver","year":"2012","journal-title":"Bioinformatics"},{"issue":"7","key":"10.1016\/j.onehlt.2025.101058_bb0085","doi-asserted-by":"crossref","first-page":"1009","DOI":"10.1093\/bioinformatics\/btr039","article-title":"Easyfig: a genome comparison visualizer","volume":"27","author":"Sullivan","year":"2011","journal-title":"Bioinformatics"},{"issue":"5","key":"10.1016\/j.onehlt.2025.101058_bb0090","doi-asserted-by":"crossref","first-page":"1530","DOI":"10.1093\/molbev\/msaa015","article-title":"IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era","volume":"37","author":"Minh","year":"2020","journal-title":"Mol. Biol. Evol."},{"issue":"1","key":"10.1016\/j.onehlt.2025.101058_bb0095","doi-asserted-by":"crossref","first-page":"256","DOI":"10.1093\/nar\/gkz239","article-title":"Interactive tree of life (iTOL) v4: recent updates and new developments","volume":"47","author":"Letunic","year":"2019","journal-title":"Nucleic Acids Res."},{"issue":"6","key":"10.1016\/j.onehlt.2025.101058_bb0100","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLoS Comput. Biol."},{"issue":"11","key":"10.1016\/j.onehlt.2025.101058_bb0105","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0112963","article-title":"Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement","volume":"9","author":"Walker","year":"2014","journal-title":"PLoS One"},{"issue":"3\u20134","key":"10.1016\/j.onehlt.2025.101058_bb0110","doi-asserted-by":"crossref","first-page":"273","DOI":"10.1016\/j.vetmic.2010.03.019","article-title":"Increased detection of extended spectrum beta-lactamase producing salmonella enterica and Escherichia coli isolates from poultry","volume":"145","author":"Dierikx","year":"2010","journal-title":"Vet. Microbiol."},{"issue":"23","key":"10.1016\/j.onehlt.2025.101058_bb0115","doi-asserted-by":"crossref","first-page":"3796","DOI":"10.1093\/bioinformatics\/btx462","article-title":"PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes","volume":"33","author":"Vielva","year":"2017","journal-title":"Bioinformatics"},{"issue":"3","key":"10.1016\/j.onehlt.2025.101058_bb0120","doi-asserted-by":"crossref","first-page":"219","DOI":"10.1016\/j.mimet.2005.03.018","article-title":"Identification of plasmids by PCR-based replicon typing","volume":"63","author":"Carattoli","year":"2005","journal-title":"J. Microbiol. Methods"},{"key":"10.1016\/j.onehlt.2025.101058_bb0125","author":"European Medicines Agency"},{"key":"10.1016\/j.onehlt.2025.101058_bb0130","doi-asserted-by":"crossref","first-page":"1136","DOI":"10.3389\/fmicb.2015.01136","article-title":"Characterization of CTX-M-14-producing Escherichia coli from food-producing animals","volume":"6","author":"Liao","year":"2015","journal-title":"Front. Microbiol."},{"issue":"10","key":"10.1016\/j.onehlt.2025.101058_bb0135","doi-asserted-by":"crossref","first-page":"917","DOI":"10.1016\/j.cmi.2015.05.032","article-title":"Carriage of extended-spectrum \u03b2-lactamases in pig farmers is associated with occurrence in pigs","volume":"21","author":"Dohmen","year":"2015","journal-title":"Clin. Microbiol. Infect."},{"key":"10.1016\/j.onehlt.2025.101058_bb0140","doi-asserted-by":"crossref","first-page":"188","DOI":"10.3389\/fmicb.2013.00188","article-title":"Molecular characterization of blaESBL-harboring conjugative plasmids identified in multi-drug resistant Escherichia coli isolated from food-producing animals and healthy humans","volume":"4","author":"Wang","year":"2013","journal-title":"Front. Microbiol."},{"issue":"4","key":"10.1016\/j.onehlt.2025.101058_bb0145","doi-asserted-by":"crossref","first-page":"1623","DOI":"10.1128\/AAC.01361-09","article-title":"High diversity of extended-spectrum beta-lactamases in Escherichia coli isolates from Italian broiler flocks","volume":"54","author":"Bortolaia","year":"2010","journal-title":"Antimicrob. Agents Chemother."},{"issue":"12","key":"10.1016\/j.onehlt.2025.101058_bb0150","article-title":"Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26","volume":"3","author":"Reid","year":"2017","journal-title":"Microb. Genom."},{"key":"10.1016\/j.onehlt.2025.101058_bb0155","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-017-15539-7","article-title":"Global phylogenetic analysis of Escherichia coli and plasmids carrying the mcr-1 gene indicates bacterial diversity but plasmid restriction","volume":"7","author":"Matamoros","year":"2017","journal-title":"Sci. Rep."},{"key":"10.1016\/j.onehlt.2025.101058_bb0160","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2019.03072","article-title":"mcr-Colistin Resistance Genes Mobilized by IncX4, IncHI2, and IncI2 Plasmids in Escherichia coli of Pigs and White Stork in Spain","volume":"10","author":"Migura-Garcia","year":"2020","journal-title":"Front. Microbiol."},{"issue":"4","key":"10.1016\/j.onehlt.2025.101058_bb0165","doi-asserted-by":"crossref","DOI":"10.1016\/j.tim.2023.10.006","article-title":"Plasmid-mediated colistin-resistance genes: mcr","volume":"32","author":"Liu","year":"2024","journal-title":"Trends Microbiol."},{"issue":"6","key":"10.1016\/j.onehlt.2025.101058_bb0170","doi-asserted-by":"crossref","first-page":"677","DOI":"10.3390\/antibiotics10060677","article-title":"Colistin selection of the mcr-1 gene in broiler chicken intestinal microbiota","volume":"10","author":"Miguela-Villoldo","year":"2021","journal-title":"Antibiotics"},{"issue":"31","key":"10.1016\/j.onehlt.2025.101058_bb0175","doi-asserted-by":"crossref","DOI":"10.2807\/1560-7917.ES.2017.22.31.30586","article-title":"Co-occurrence of colistin-resistance genes mcr-1 and mcr-3 among multidrug-resistant Escherichia coli isolated from cattle, Spain, September 2015","volume":"22","author":"Hern\u00e1ndez","year":"2017","journal-title":"Euro. Surveill."},{"issue":"9","key":"10.1016\/j.onehlt.2025.101058_bb0180","doi-asserted-by":"crossref","first-page":"1630","DOI":"10.4315\/0362-028X.JFP-16-093","article-title":"Characterization of extended-Spectrum \u03b2-lactamase-producing Escherichia coli isolates from pigs and farm workers","volume":"79","author":"Zhang","year":"2016","journal-title":"J. Food Prot."},{"issue":"4","key":"10.1016\/j.onehlt.2025.101058_bb0185","doi-asserted-by":"crossref","first-page":"861","DOI":"10.1007\/s00248-015-0718-0","article-title":"Wild birds, frequent carriers of extended-Spectrum \u03b2-lactamase (ESBL) producing Escherichia coli of CTX-M and SHV-12 types","volume":"72","author":"Alcal\u00e1","year":"2016","journal-title":"Microb. Ecol."},{"issue":"8","key":"10.1016\/j.onehlt.2025.101058_bb0190","doi-asserted-by":"crossref","first-page":"1013","DOI":"10.3390\/antibiotics10081013","article-title":"Antimicrobial resistance genes and diversity of clones among faecal ESBL-producing Escherichia coli isolated from healthy and sick dogs living in Portugal","volume":"10","author":"Carvalho","year":"2021","journal-title":"Antibiotics"},{"issue":"11","key":"10.1016\/j.onehlt.2025.101058_bb0195","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0143326","article-title":"Occurrence of ESBL-producing Escherichia coli in livestock and farm Workers in Mecklenburg-Western Pomerania, Germany","volume":"10","author":"Dahms","year":"2015","journal-title":"PLoS One"},{"issue":"4","key":"10.1016\/j.onehlt.2025.101058_bb0200","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.01571-22","article-title":"High prevalence and persistence of Escherichia coli strains producing Shiga toxin subtype 2k in goat herds","volume":"10","author":"Yang","year":"2022","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.onehlt.2025.101058_bb0205","article-title":"Whole-genome analysis of Escherichia coli isolated from wild Amur tiger (Panthera tigris altaica) and North China leopard (Panthera pardus japonensis)","volume":"12","author":"Li","year":"2024","journal-title":"PeerJ"},{"issue":"1","key":"10.1016\/j.onehlt.2025.101058_bb0210","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0294099","article-title":"Characteristics of antimicrobial resistance in Escherichia coli isolated from retail meat products in North Carolina","volume":"19","author":"Aworh","year":"2024","journal-title":"PLoS One"},{"issue":"1","key":"10.1016\/j.onehlt.2025.101058_bb0215","doi-asserted-by":"crossref","first-page":"93","DOI":"10.1186\/s13756-020-00742-5","article-title":"Poor infection prevention and control standards are associated with environmental contamination with carbapenemase-producing Enterobacterales and other multidrug-resistant bacteria in Swiss companion animal clinics","volume":"9","author":"Schmidt","year":"2020","journal-title":"Antimicrob. Resist. Infect. Control"},{"key":"10.1016\/j.onehlt.2025.101058_bb0220","doi-asserted-by":"crossref","DOI":"10.1016\/j.vetmic.2022.109453","article-title":"Clonal and plasmid-mediated flow of ESBL\/AmpC genes in Escherichia coli in a commercial laying hen farm","volume":"270","author":"Aldea","year":"2022","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.onehlt.2025.101058_bb0225","doi-asserted-by":"crossref","first-page":"137","DOI":"10.1016\/j.jgar.2021.02.032","article-title":"Prevalence, detection and characterisation of fosfomycin-resistant Escherichia coli strains carrying fosA genes in Community of Madrid, Spain","volume":"25","author":"Loras","year":"2021","journal-title":"J. Glob. Antimicrob. Resist."},{"issue":"12","key":"10.1016\/j.onehlt.2025.101058_bb0230","doi-asserted-by":"crossref","first-page":"5204","DOI":"10.1128\/AAC.01706-08","article-title":"Spread of Bla(CTX-M-14) is driven mainly by IncK plasmids disseminated among Escherichia coli phylogroups a, B1, and D in Spain","volume":"53","author":"Valverde","year":"2009","journal-title":"Antimicrob. Agents Chemother."},{"issue":"8","key":"10.1016\/j.onehlt.2025.101058_bb0235","doi-asserted-by":"crossref","first-page":"468","DOI":"10.3390\/antibiotics9080468","article-title":"High prevalence and diversity of cephalosporin-resistant Enterobacteriaceae including extraintestinal pathogenic E. coli CC648 lineage in rural and urban dogs in Northwest Spain","volume":"9","author":"Abreu-Salinas","year":"2020","journal-title":"Antibiotics"}],"container-title":["One Health"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2352771425000941?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2352771425000941?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,12,11]],"date-time":"2025-12-11T00:33:11Z","timestamp":1765413191000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2352771425000941"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,6]]},"references-count":47,"alternative-id":["S2352771425000941"],"URL":"https:\/\/doi.org\/10.1016\/j.onehlt.2025.101058","relation":{},"ISSN":["2352-7714"],"issn-type":[{"value":"2352-7714","type":"print"}],"subject":[],"published":{"date-parts":[[2025,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Interplay between bacterial clones and plasmids in the spread of blaSHV-12- and blaCTX-M-14-carrying Escherichia coli from the livestock environment","name":"articletitle","label":"Article Title"},{"value":"One Health","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.onehlt.2025.101058","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Authors. Published by Elsevier B.V.","name":"copyright","label":"Copyright"}],"article-number":"101058"}}