{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,5]],"date-time":"2025-11-05T13:30:37Z","timestamp":1762349437673,"version":"build-2065373602"},"reference-count":33,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-017"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-037"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-012"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-029"},{"start":{"date-parts":[[2025,3,1]],"date-time":"2025-03-01T00:00:00Z","timestamp":1740787200000},"content-version":"stm-asf","delay-in-days":0,"URL":"https:\/\/doi.org\/10.15223\/policy-004"}],"funder":[{"DOI":"10.13039\/501100007129","name":"Shandong Province Natural Science Foundation","doi-asserted-by":"publisher","award":["ZR2021QC006","ZR2020MD072"],"award-info":[{"award-number":["ZR2021QC006","ZR2020MD072"]}],"id":[{"id":"10.13039\/501100007129","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["42076126"],"award-info":[{"award-number":["42076126"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100005047","name":"Natural Science Foundation of Liaoning Province","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100005047","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Plant Physiology and Biochemistry"],"published-print":{"date-parts":[[2025,3]]},"DOI":"10.1016\/j.plaphy.2025.109480","type":"journal-article","created":{"date-parts":[[2025,1,7]],"date-time":"2025-01-07T03:20:16Z","timestamp":1736220016000},"page":"109480","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"special_numbering":"C","title":["Integration of\u2002transcriptomics and metabolomics of 2-furoic acid-treated Meloidogyne incognita reveals a calmodulin gene associated with motility and pathogenicity"],"prefix":"10.1016","volume":"220","author":[{"given":"Linsong","family":"Wang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Zhaoqian","family":"Fan","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kun","family":"Gao","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yukun","family":"Qin","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.plaphy.2025.109480_bib1","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1046\/j.1364-3703.2003.00170.x","article-title":"Root-knot nematode parasitism and host response: molecular basis of a sophisticated interaction","volume":"4","author":"Abad","year":"2003","journal-title":"Mol. Plant Pathol."},{"key":"10.1016\/j.plaphy.2025.109480_bib2","doi-asserted-by":"crossref","first-page":"175","DOI":"10.1111\/1751-7915.12467","article-title":"Bioactive secondary metabolites with multiple activities from a fungal endophyte","volume":"10","author":"Bogner","year":"2017","journal-title":"Microb. Biotechnol."},{"key":"10.1016\/j.plaphy.2025.109480_bib3","doi-asserted-by":"crossref","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"Fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.plaphy.2025.109480_bib5","doi-asserted-by":"crossref","first-page":"1379","DOI":"10.3390\/f14071379","article-title":"Cinnamyl alcohol dehydrogenase gene regulates Bursaphelenchus xylophilus reproduction and development","volume":"14","author":"Dong","year":"2023","journal-title":"Forests"},{"key":"10.1016\/j.plaphy.2025.109480_bib6","doi-asserted-by":"crossref","first-page":"165","DOI":"10.3390\/md18030165","article-title":"Sesquiterpenes and cyclodepsipeptides from marine-derived fungus Trichoderma longibrachiatum and their antagonistic activities against soil-borne pathogens","volume":"18","author":"Du","year":"2020","journal-title":"Mar. Drugs"},{"key":"10.1016\/j.plaphy.2025.109480_bib7","doi-asserted-by":"crossref","first-page":"273","DOI":"10.3390\/md18050273","article-title":"Chitosan oligosaccharide fluorinated derivative control root-knot nematode (Meloidogyne incognita) disease based on the multi-efficacy strategy","volume":"18","author":"Fan","year":"2020","journal-title":"Mar. Drugs"},{"key":"10.1016\/j.plaphy.2025.109480_bib8","doi-asserted-by":"crossref","DOI":"10.1016\/j.aquatox.2023.106401","article-title":"The growth toxicity and neurotoxicity mechanism of waterborne TBOEP to nematodes: insights from transcriptomic and metabolomic profiles","volume":"256","author":"Ju","year":"2023","journal-title":"Aquat. Toxicol."},{"key":"10.1016\/j.plaphy.2025.109480_bib9","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1078\/0171-9335-00347","article-title":"Functional analysis of the single calmodulin gene in the nematode Caenorhabditis elegans by RNA interference and 4-D microscopy","volume":"82","author":"Karabinos","year":"2003","journal-title":"Eur. J. Cell Biol."},{"key":"10.1016\/j.plaphy.2025.109480_bib10","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.3317","article-title":"HISAT: a fast spliced aligner with low memory requirements","volume":"12","author":"Kim","year":"2015","journal-title":"Nat. Methods"},{"key":"10.1016\/j.plaphy.2025.109480_bib11","doi-asserted-by":"crossref","first-page":"11291","DOI":"10.1021\/acs.jafc.8b05101","article-title":"Elicitation of differential responses in the root-knot nematode Meloidogyne incognita to tomato root exudate cytokinin, flavonoids, and alkaloids","volume":"66","author":"Kirwa","year":"2018","journal-title":"J. Agric. Food Chem."},{"key":"10.1016\/j.plaphy.2025.109480_bib12","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.1923","article-title":"Fast gapped-read alignment with Bowtie 2","volume":"9","author":"Langmead","year":"2012","journal-title":"Nat. Methods"},{"key":"10.1016\/j.plaphy.2025.109480_bib13","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.01896-23","article-title":"2-Furoic acid associated with the infection of nematodes by Dactylellina haptotyla and its biocontrol potential on plant root-knot nematodes","volume":"11","author":"Lei","year":"2023","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.plaphy.2025.109480_bib14","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1186\/1471-2105-12-323","article-title":"RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome","volume":"12","author":"Li","year":"2011","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.plaphy.2025.109480_bib15","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1039\/D2NP00074A","article-title":"Natural nematicidal metabolites and advances in their biocontrol capacity on plant parasitic nematodes","volume":"40","author":"Li","year":"2023","journal-title":"Nat. Prod. Rep."},{"key":"10.1016\/j.plaphy.2025.109480_bib16","doi-asserted-by":"crossref","first-page":"10269","DOI":"10.1021\/acs.jafc.3c00661","article-title":"Vanillin in resistant tomato plant root exudate suppresses Meloidogyne incognita parasitism","volume":"71","author":"Lu","year":"2023","journal-title":"J. Agric. Food Chem."},{"key":"10.1016\/j.plaphy.2025.109480_bib17","doi-asserted-by":"crossref","first-page":"2005","DOI":"10.1007\/s41348-024-00957-3","article-title":"Efficacy of nematicides, Tricuran-p (Trichoderma harzianumt-22) and chicken manure on cucumber root-knot nematode populations, plant growth and soil enzyme activities","volume":"131","author":"Mardani","year":"2024","journal-title":"J. Plant Dis. Prot."},{"key":"10.1016\/j.plaphy.2025.109480_bib18","doi-asserted-by":"crossref","first-page":"859","DOI":"10.1163\/15685411-00003181","article-title":"Genetic variation of bread wheat accessions in response to the cereal cyst nematode, heterodera filipjevi","volume":"20","author":"Moatamedi","year":"2018","journal-title":"Nematology"},{"key":"10.1016\/j.plaphy.2025.109480_bib19","doi-asserted-by":"crossref","DOI":"10.1016\/j.pmpp.2023.102024","article-title":"Transcriptome-proteomic analysis associated with resistance to wheat cyst nematode heterodera filipjevi","volume":"125","author":"Moatamedi","year":"2023","journal-title":"Physiol. Mol. Plant Pathol."},{"key":"10.1016\/j.plaphy.2025.109480_bib20","doi-asserted-by":"crossref","first-page":"45","DOI":"10.5958\/0974-4444.2023.00007.0","article-title":"Management of root-knot nematodes, meloidogyne spp. by organic manures in pomegranate, punica granatum","volume":"53","author":"Nasr-Esfahani","year":"2023","journal-title":"Indian J. Nematol."},{"key":"10.1016\/j.plaphy.2025.109480_bib21","doi-asserted-by":"crossref","first-page":"1082","DOI":"10.1002\/ps.1796","article-title":"Nematicidal efficacy of MCW-2, a new nematicide of the fluoroalkenyl group, against the root-knot nematode Meloidogyne javanica","volume":"65","author":"Oka","year":"2009","journal-title":"Pest Manag. Sci."},{"key":"10.1016\/j.plaphy.2025.109480_bib22","doi-asserted-by":"crossref","first-page":"1650","DOI":"10.1038\/nprot.2016.095","article-title":"Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown","volume":"11","author":"Pertea","year":"2016","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.plaphy.2025.109480_bib23","first-page":"21","article-title":"Root-knot nematode (Meloidogyne incognita) and its management: a review","volume":"3","author":"Subedi","year":"2020","journal-title":"J. Agric. Food Chem."},{"key":"10.1016\/j.plaphy.2025.109480_bib24","doi-asserted-by":"crossref","first-page":"5223","DOI":"10.1021\/acs.jcim.1c00873","article-title":"Non-canonical interaction between calmodulin and calcineurin contributes to the differential regulation of plant-dderived calmodulins on calcineurin","volume":"61","author":"Sun","year":"2021","journal-title":"J. Chem. Inf. Model."},{"key":"10.1016\/j.plaphy.2025.109480_bib25","doi-asserted-by":"crossref","first-page":"5551","DOI":"10.1111\/febs.12296","article-title":"Structural diversity of calmodulin binding to its target sites","volume":"280","author":"Tidow","year":"2013","journal-title":"FEBS J."},{"key":"10.1016\/j.plaphy.2025.109480_bib26","doi-asserted-by":"crossref","first-page":"4644","DOI":"10.1021\/acs.jafc.1c08147","article-title":"Novel lead compound discovery from Aspergillus fumigatus 1T-2 against Meloidogyne incognita based on a chemical ecology study","volume":"70","author":"Wang","year":"2022","journal-title":"J. Agric. Food Chem."},{"key":"10.1016\/j.plaphy.2025.109480_bib27","doi-asserted-by":"crossref","first-page":"497","DOI":"10.1017\/S0031182018001695","article-title":"The alcohol dehydrogenase with a broad range of substrate specificity regulates vitality and reproduction of the plant-parasitic nematode Bursaphelenchus xylophilus","volume":"146","author":"Wang","year":"2019","journal-title":"Parasitology"},{"key":"10.1016\/j.plaphy.2025.109480_bib28","article-title":"UGT440A1 is associated with motility, reproduction, and pathogenicity of the plant-parasitic nematode Bursaphelenchus xylophilus","volume":"13","author":"Wang","year":"2022","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.plaphy.2025.109480_bib29","doi-asserted-by":"crossref","first-page":"312","DOI":"10.1038\/s41579-022-00819-5","article-title":"Trichoderma: a multipurpose, plant-beneficial microorganism for eco-sustainable agriculture","volume":"21","author":"Woo","year":"2023","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.plaphy.2025.109480_bib30","doi-asserted-by":"crossref","first-page":"48","DOI":"10.1186\/s12866-020-01738-2","article-title":"\u03b1\u03b2-Dehydrocurvularin isolated from the fungus Aspergillus welwitschiae effectively inhibited the behaviour and development of the root-knot nematode Meloidogyne graminicola in rice roots","volume":"20","author":"Xiang","year":"2020","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.plaphy.2025.109480_bib31","doi-asserted-by":"crossref","DOI":"10.1093\/hr\/uhac051","article-title":"Negative regulation of root-knot nematode parasitic behavior by root-derived volatiles of wild relatives of Cucumis metuliferus CM3","volume":"9","author":"Xie","year":"2022","journal-title":"Hortic. Res."},{"issue":"6870","key":"10.1016\/j.plaphy.2025.109480_bib32","article-title":"Efficacy of a chitin-based water-soluble derivative in inducing Purpureocillium lilacinum against nematode disease (Meloidogyne incognita)","volume":"22","author":"Zhan","year":"2021","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.plaphy.2025.109480_bib33","article-title":"Metabolic variations in root tissues and rhizosphere soils of weak host plants potently lead to distinct host status and chemotaxis regulation of Meloidogyne incognita in intercropping","volume":"25","author":"Zhang","year":"2023","journal-title":"Mol. Plant Pathol."},{"key":"10.1016\/j.plaphy.2025.109480_bib34","doi-asserted-by":"crossref","first-page":"14573","DOI":"10.1021\/acs.energyfuels.0c02707","article-title":"Sulfonated vermiculite-mediated catalysis of reed (Phragmites communis) into furfural for enhancing the biosynthesis of 2-furoic acid with a dehydrogenase biocatalyst in a one-pot manner","volume":"34","author":"Zhu","year":"2020","journal-title":"Energy Fuels"}],"container-title":["Plant Physiology and Biochemistry"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0981942825000087?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0981942825000087?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,11,5]],"date-time":"2025-11-05T13:21:18Z","timestamp":1762348878000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0981942825000087"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2025,3]]},"references-count":33,"alternative-id":["S0981942825000087"],"URL":"https:\/\/doi.org\/10.1016\/j.plaphy.2025.109480","relation":{},"ISSN":["0981-9428"],"issn-type":[{"type":"print","value":"0981-9428"}],"subject":[],"published":{"date-parts":[[2025,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Integration of\u2002transcriptomics and metabolomics of 2-furoic acid-treated Meloidogyne incognita reveals a calmodulin gene associated with motility and pathogenicity","name":"articletitle","label":"Article Title"},{"value":"Plant Physiology and Biochemistry","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.plaphy.2025.109480","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Elsevier Masson SAS. All rights are reserved, including those for text and data mining, AI training, and similar technologies.","name":"copyright","label":"Copyright"}],"article-number":"109480"}}