{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,17]],"date-time":"2026-09-17T03:37:11Z","timestamp":1789616231065,"version":"build-2803163510"},"reference-count":94,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T00:00:00Z","timestamp":1769904000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,12,20]],"date-time":"2025-12-20T00:00:00Z","timestamp":1766188800000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001409","name":"India Ministry of Science & Technology Department of Science and Technology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001409","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001407","name":"Department of Biotechnology, Ministry of Science and Technology, India","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001407","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Plant Physiology and Biochemistry"],"published-print":{"date-parts":[[2026,2]]},"DOI":"10.1016\/j.plaphy.2025.110981","type":"journal-article","created":{"date-parts":[[2025,12,22]],"date-time":"2025-12-22T16:59:12Z","timestamp":1766422752000},"page":"110981","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"special_numbering":"C","title":["Network-based multiomics and transgenic validation reveal that OsPHR3 modulates phosphate-carbon metabolic trade-offs during rice seed development"],"prefix":"10.1016","volume":"231","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0271-7481","authenticated-orcid":false,"given":"Lekha","family":"Pazhamala","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0004-3774-1192","authenticated-orcid":false,"given":"Mandavi","family":"Pandey","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Priyanka","family":"Deveshwar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Arindam","family":"Ghatak","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wolfram","family":"Weckwerth","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Palak","family":"Chaturvedi","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6969-5187","authenticated-orcid":false,"given":"Jitender","family":"Giri","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.plaphy.2025.110981_bib1","doi-asserted-by":"crossref","first-page":"189","DOI":"10.1002\/bies.201000107","article-title":"Transcription factors regulating the progression of monocot and dicot seed development","volume":"33","author":"Agarwal","year":"2011","journal-title":"Bioessays"},{"key":"10.1016\/j.plaphy.2025.110981_bib2","doi-asserted-by":"crossref","first-page":"259","DOI":"10.3389\/fpls.2018.00259","article-title":"RNAi mediated down regulation of inositol penta kisphosphate kinase (IPK1) in wheat grains decreases phytic acid levels and increases Fe and Zn accumulation","volume":"9","author":"Aggarwal","year":"2018","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib3","doi-asserted-by":"crossref","first-page":"1935","DOI":"10.1007\/s12298-024-01540-8","article-title":"Role of alanine aminotransferase in crop resilience to climate change: a critical review","volume":"30","author":"Agrawal","year":"2024","journal-title":"Physiol. Mol. Biol. Plants"},{"key":"10.1016\/j.plaphy.2025.110981_bib4","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1939-8433-6-12","article-title":"RNAi mediated down regulation of myo-inositol-3-phosphate synthase to generate low phytate rice","volume":"6","author":"Ali","year":"2013","journal-title":"Rice"},{"key":"10.1016\/j.plaphy.2025.110981_bib5","doi-asserted-by":"crossref","first-page":"8025","DOI":"10.1007\/s11033-022-07333-0","article-title":"Potential of engineering the myo-inositol oxidation pathway to increase stress resilience in plants","volume":"49","author":"Alok","year":"2022","journal-title":"Mol. Biol. Rep."},{"key":"10.1016\/j.plaphy.2025.110981_bib6","doi-asserted-by":"crossref","first-page":"501","DOI":"10.1093\/pcp\/pcad013","article-title":"Root-expressed rice PAP3b enhances secreted APase activity and helps utilize organic phosphate","volume":"64","author":"Bhadouria","year":"2023","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib7","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1007\/s11104-012-1561-4","article-title":"Phosphorus accumulation in grains of japonica rice as affected by nitrogen fertilizer","volume":"369","author":"Bi","year":"2013","journal-title":"Plant Soil"},{"key":"10.1016\/j.plaphy.2025.110981_bib8","doi-asserted-by":"crossref","first-page":"1960","DOI":"10.1093\/plcell\/koad071","article-title":"Coordinating phosphorus and jasmonate signaling: PHR1 partners with transcriptional regulators","volume":"35","author":"Chan","year":"2023","journal-title":"Plant Cell"},{"key":"10.1016\/j.plaphy.2025.110981_bib9","doi-asserted-by":"crossref","first-page":"1387","DOI":"10.1093\/pcp\/pcaa074","article-title":"Node-localized transporters of phosphorus essential for seed development in rice","volume":"61","author":"Che","year":"2020","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib10","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s00425-021-03609-0","article-title":"The Craterostigma plantagineum protein kinase CpWAK1 interacts with pectin and integrates different environmental signals in the cell wall","volume":"253","author":"Chen","year":"2021","journal-title":"Planta"},{"key":"10.1016\/j.plaphy.2025.110981_bib11","doi-asserted-by":"crossref","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"Fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.plaphy.2025.110981_bib12","doi-asserted-by":"crossref","first-page":"967","DOI":"10.1016\/j.tplants.2020.04.013","article-title":"Tightening the phosphorus cycle through phosphorus-efficient crop genotypes","volume":"25","author":"Cong","year":"2020","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib13","doi-asserted-by":"crossref","first-page":"1014","DOI":"10.1126\/science.1167755","article-title":"Controlling eutrophication: nitrogen and phosphorus","volume":"323","author":"Conley","year":"2009","journal-title":"Science"},{"key":"10.1016\/j.plaphy.2025.110981_bib14","doi-asserted-by":"crossref","first-page":"565","DOI":"10.1093\/pcp\/pcs011","article-title":"Arabidopsis type-III phosphatidylinositol 4-kinases \u03b21 and \u03b22 are upstream of the phospholipase C pathway triggered by cold exposure","volume":"53","author":"Delage","year":"2012","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib15","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/1471-2229-13-84","article-title":"Perturbing the metabolic dynamics of myo-inositol in developing Brassica napus seeds through in vivo methylation impacts its utilization as phytate precursor and affects downstream metabolic pathways","volume":"13","author":"Dong","year":"2013","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib16","doi-asserted-by":"crossref","first-page":"376","DOI":"10.1007\/s40502-019-00462-y","article-title":"Proline and carbohydrate metabolism in rice varieties (Oryza sativa L.) under various drought and recovery conditions","volume":"24","author":"Dien","year":"2019","journal-title":"Plant Physiology Reports"},{"key":"10.1016\/j.plaphy.2025.110981_bib17","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1093\/aob\/mct298","article-title":"GPT2: a glucose 6-phosphate\/phosphate translocator with a novel role in the regulation of sugar signalling during seedling development","volume":"113","author":"Dyson","year":"2014","journal-title":"Ann. Bot."},{"key":"10.1016\/j.plaphy.2025.110981_bib18","doi-asserted-by":"crossref","DOI":"10.3389\/fnut.2021.694370","article-title":"Risk\u2013benefit assessment of consumption of rice for adult men in China","volume":"8","author":"Fang","year":"2021","journal-title":"Front. Nutr."},{"key":"10.1016\/j.plaphy.2025.110981_bib19","doi-asserted-by":"crossref","first-page":"510","DOI":"10.1016\/j.jgg.2022.02.028","article-title":"Alanine aminotransferase (OsAlaAT1) modulates nitrogen utilization, grain yield, and quality in rice","volume":"49","author":"Fang","year":"2022","journal-title":"Journal of Genetics and Genomics"},{"key":"10.1016\/j.plaphy.2025.110981_bib20","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2020.600278","article-title":"Physiological and proteomic signatures reveal mechanisms of superior drought resilience in pearl millet compared to wheat","volume":"11","author":"Ghatak","year":"2021","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib21","doi-asserted-by":"crossref","first-page":"396","DOI":"10.1016\/j.molp.2015.12.012","article-title":"Complex regulation of plant phosphate transporters and the gap between molecular mechanisms and practical application: what is missing?","volume":"9","author":"Gu","year":"2016","journal-title":"Mol. Plant"},{"key":"10.1016\/j.plaphy.2025.110981_bib22","doi-asserted-by":"crossref","first-page":"2047","DOI":"10.1111\/nph.17297","article-title":"Seed-borne, endospheric and rhizospheric core microbiota as predictors of plant functional traits across rice cultivars dominated by deterministic processes","volume":"230","author":"Guo","year":"2021","journal-title":"New Phytol."},{"key":"10.1016\/j.plaphy.2025.110981_bib23","doi-asserted-by":"crossref","first-page":"1762","DOI":"10.1104\/pp.15.00736","article-title":"Integrative comparison of the role of the PHOSPHATE RESPONSE1 subfamily in phosphate signaling and homeostasis in rice","volume":"168","author":"Guo","year":"2015","journal-title":"Plant Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib24","doi-asserted-by":"crossref","first-page":"162","DOI":"10.1007\/s11032-019-1059-3","article-title":"Molecular control and genetic improvement of phosphorus use efficiency in rice","volume":"39","author":"He","year":"2019","journal-title":"Mol. Breed."},{"key":"10.1016\/j.plaphy.2025.110981_bib25","doi-asserted-by":"crossref","first-page":"650","DOI":"10.1104\/pp.010585","article-title":"Biochemical and molecular characterization of a mutation that confers a decreased raffinosaccharide and phytic acid phenotype on soybean seeds","volume":"128","author":"Hitz","year":"2002","journal-title":"Plant Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib26","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/gb-2007-8-9-r183","article-title":"The DAVID gene functional classification tool: a novel biological module-centric algorithm to functionally analyze large gene lists","volume":"8","author":"Huang","year":"2007","journal-title":"Genome Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib27","doi-asserted-by":"crossref","first-page":"9265","DOI":"10.1007\/s13762-024-05664-y","article-title":"Phosphorus' future insecurity: the horror of depletion and sustainability measures","volume":"21","author":"Illakwahhi","year":"2024","journal-title":"Int. J. Environ. Sci. Technol."},{"key":"10.1016\/j.plaphy.2025.110981_bib28","doi-asserted-by":"crossref","first-page":"1151","DOI":"10.1093\/aob\/mcw164","article-title":"Phosphorus uptake, partitioning and redistribution during grain filling in rice","volume":"118","author":"Julia","year":"2016","journal-title":"Ann. Bot."},{"key":"10.1016\/j.plaphy.2025.110981_bib29","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1093\/nar\/28.1.27","article-title":"KEGG: kyoto encyclopedia of genes and genomes","volume":"28","author":"Kanehisa","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.plaphy.2025.110981_bib30","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1111\/j.1365-313X.2005.02423.x","article-title":"White\u2010core endosperm floury endosperm\u20104 in rice is generated by knockout mutations in the C4\u2010type pyruvate orthophosphate dikinase gene (OsPPDKB)","volume":"42","author":"Kang","year":"2005","journal-title":"Plant J."},{"key":"10.1016\/j.plaphy.2025.110981_bib31","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12864-018-4824-5","article-title":"The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen","volume":"19","author":"Keller","year":"2018","journal-title":"BMC Genom."},{"key":"10.1016\/j.plaphy.2025.110981_bib32","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","article-title":"Graph-based genome alignment and genotyping with HISAT2 and HISAT-Genotype","volume":"37","author":"Kim","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.plaphy.2025.110981_bib33","doi-asserted-by":"crossref","first-page":"351","DOI":"10.1111\/nph.20033","article-title":"Maternal effect contributes to grain-filling defects of Ospho1;2 rice mutants","volume":"244","author":"Ko","year":"2024","journal-title":"New Phytol."},{"key":"10.1016\/j.plaphy.2025.110981_bib34","doi-asserted-by":"crossref","DOI":"10.1016\/j.gfs.2020.100441","article-title":"Rural transformation and the future of cereal-based agri-food systems","volume":"26","author":"Kruseman","year":"2020","journal-title":"Global Food Secur."},{"key":"10.1016\/j.plaphy.2025.110981_bib35","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1111\/j.1467-7652.2008.00375.x","article-title":"Generation of stable \u2018low phytic acid\u2019transgenic rice through antisense repression of the 1d\u2010myo\u2010inositol 3\u2010phosphate synthase gene (RINO1) using the 18\u2010kDa oleosin promoter","volume":"7","author":"Kuwano","year":"2009","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.plaphy.2025.110981_bib36","doi-asserted-by":"crossref","first-page":"17","DOI":"10.1146\/annurev-arplant-102720-125738","article-title":"Phosphorus acquisition and utilization in plants","volume":"73","author":"Lambers","year":"2022","journal-title":"Annu. Rev. Plant Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib37","doi-asserted-by":"crossref","first-page":"559","DOI":"10.1186\/1471-2105-9-559","article-title":"WGCNA: an R package for weighted correlation network analysis","volume":"9","author":"Langfelder","year":"2008","journal-title":"BMC Bioinf."},{"issue":"Suppl. l_1","key":"10.1016\/j.plaphy.2025.110981_bib38","first-page":"D19","article-title":"International nucleotide sequence database collaboration, the sequence read archive","volume":"39","author":"Leinonen","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.plaphy.2025.110981_bib40","doi-asserted-by":"crossref","first-page":"585","DOI":"10.1007\/s11248-014-9792-1","article-title":"Seed-specific silencing of OsMRP5 reduces seed phytic acid and weight in rice","volume":"23","author":"Li","year":"2014","journal-title":"Transgenic Res."},{"key":"10.1016\/j.plaphy.2025.110981_bib41","doi-asserted-by":"crossref","first-page":"923","DOI":"10.1093\/bioinformatics\/btt656","article-title":"featureCounts: an efficient general-purpose program for assigning sequence reads to genomic features","volume":"30","author":"Liao","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.plaphy.2025.110981_bib42","doi-asserted-by":"crossref","first-page":"612","DOI":"10.1111\/j.1365-313X.2004.02160.x","article-title":"Molecular events in senescing arabidopsis leaves","volume":"39","author":"Lin","year":"2004","journal-title":"Plant J."},{"key":"10.1016\/j.plaphy.2025.110981_bib43","doi-asserted-by":"crossref","first-page":"402","DOI":"10.1006\/meth.2001.1262","article-title":"Analysis of relative gene expression data using real-time quantitative PCR and the 2(-\u0394\u0394CT) method","volume":"25","author":"Livak","year":"2001","journal-title":"Methods"},{"key":"10.1016\/j.plaphy.2025.110981_bib44","doi-asserted-by":"crossref","first-page":"11","DOI":"10.1017\/S0960258500000039","article-title":"Phytic acid and phosphorus in crop seeds and fruits: a global estimate","volume":"10","author":"Lott","year":"2000","journal-title":"Seed Sci. Res."},{"key":"10.1016\/j.plaphy.2025.110981_bib45","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib46","doi-asserted-by":"crossref","first-page":"906","DOI":"10.1038\/s41588-021-00855-6","article-title":"A plasma membrane transporter coordinates phosphate reallocation and grain filling in cereals","volume":"53","author":"Ma","year":"2021","journal-title":"Nat. Genet."},{"key":"10.1016\/j.plaphy.2025.110981_bib47","article-title":"Genetic improvement of phosphate-limited photosynthesis for high yield in rice","volume":"vol 121","author":"Ma","year":"2024"},{"key":"10.1016\/j.plaphy.2025.110981_bib48","doi-asserted-by":"crossref","first-page":"1054","DOI":"10.1111\/pbi.12699","article-title":"Improvement in phosphate acquisition and utilization by a secretory purple acid phosphatase (OsPAP21b) in rice","volume":"15","author":"Mehra","year":"2017","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.plaphy.2025.110981_bib49","doi-asserted-by":"crossref","first-page":"1167","DOI":"10.1111\/pce.13459","article-title":"A novel glycerophosphodiester phosphodiesterase improves phosphate deficiency tolerance in rice","volume":"42","author":"Mehra","year":"2019","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.plaphy.2025.110981_bib50","doi-asserted-by":"crossref","DOI":"10.1016\/j.foodchem.2020.127583","article-title":"Effect of washing, soaking and pH in combination with ultrasound on enzymatic rancidity, phytic acid heavy metals and coliforms of rice bran","volume":"334","author":"Mohammadi","year":"2021","journal-title":"Food Chem."},{"key":"10.1016\/j.plaphy.2025.110981_bib51","doi-asserted-by":"crossref","first-page":"89","DOI":"10.1046\/j.1365-313X.1998.00185.x","article-title":"Low\u2010oxygen stress and water deficit induce cytosolic pyruvate orthophosphate dikinase (PPDK) expression in roots of rice, a C3 plant","volume":"15","author":"Moons","year":"1998","journal-title":"Plant J."},{"key":"10.1016\/j.plaphy.2025.110981_bib52","first-page":"kiae453","article-title":"A lipid synthase maintains metabolic flux for jasmonate synthesis to regulate root growth and phosphate homeostasis","author":"Pandey","year":"2024","journal-title":"Plant Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib53","first-page":"18928","article-title":"Quantitative proteomic analysis of distinct mammalian mediator complexes using normalized spectral abundance factors","volume":"vol 103","author":"Paoletti","year":"2006"},{"key":"10.1016\/j.plaphy.2025.110981_bib54","doi-asserted-by":"crossref","DOI":"10.1002\/tpg2.20028","article-title":"Multiomics approach unravels fertility transition in a pigeonpea line for a two-line hybrid system","volume":"13","author":"Pazhamala","year":"2020","journal-title":"Plant Genome"},{"key":"10.1016\/j.plaphy.2025.110981_bib55","doi-asserted-by":"crossref","first-page":"2037","DOI":"10.1093\/jxb\/erx010","article-title":"Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation","volume":"68","author":"Pazhamala","year":"2017","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.plaphy.2025.110981_bib56","doi-asserted-by":"crossref","first-page":"R623","DOI":"10.1016\/j.cub.2022.03.073","article-title":"Phosphate acquisition and metabolism in plants","volume":"32","author":"Poirier","year":"2022","journal-title":"Curr. Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib57","doi-asserted-by":"crossref","first-page":"458","DOI":"10.1016\/S1360-1385(01)02104-5","article-title":"Seeds for a better future: \u2018low phytate\u2019 grains help to overcome malnutrition and reduce pollution","volume":"6","author":"Raboy","year":"2001","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib58","doi-asserted-by":"crossref","first-page":"1033","DOI":"10.1016\/S0031-9422(03)00446-1","article-title":"myo-Inositol-1, 2, 3, 4, 5, 6-Hexakisphosphate","volume":"64","author":"Raboy","year":"2003","journal-title":"Phytochemistry"},{"key":"10.1016\/j.plaphy.2025.110981_bib59","doi-asserted-by":"crossref","first-page":"874","DOI":"10.1038\/nbt0807-874","article-title":"The ABCs of low-phytate crops","volume":"25","author":"Raboy","year":"2007","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.plaphy.2025.110981_bib60","doi-asserted-by":"crossref","first-page":"281","DOI":"10.1016\/j.plantsci.2009.06.012","article-title":"Approaches and challenges to engineering seed phytate and total phosphorus","volume":"177","author":"Raboy","year":"2009","journal-title":"Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib61","doi-asserted-by":"crossref","first-page":"140","DOI":"10.3390\/plants9020140","article-title":"Low phytic acid crops: observations based on four decades of research","volume":"9","author":"Raboy","year":"2020","journal-title":"Plants"},{"key":"10.1016\/j.plaphy.2025.110981_bib62","doi-asserted-by":"crossref","first-page":"9200","DOI":"10.1038\/s41598-018-27484-0","article-title":"Identification of rice landraces with promising yield and the associated genomic regions under low nitrogen","volume":"8","author":"Rao","year":"2018","journal-title":"Sci. Rep."},{"key":"10.1016\/j.plaphy.2025.110981_bib63","doi-asserted-by":"crossref","first-page":"444","DOI":"10.3389\/fpls.2013.00444","article-title":"Improving phosphorus efficiency in cereal crops: is breeding for reduced grain phosphorus concentration part of the solution?","volume":"4","author":"Rose","year":"2013","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib64","doi-asserted-by":"crossref","first-page":"404","DOI":"10.1002\/jpln.200625163","article-title":"Differential accumulation patterns of phosphorus and potassium by canola cultivars compared to wheat","volume":"170","author":"Rose","year":"2007","journal-title":"J. Plant Nutr. Soil Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib65","doi-asserted-by":"crossref","DOI":"10.1016\/j.jcs.2019.102896","article-title":"Accumulation of phytate and starch lysophospholipids in rice grains and responses to alterations in P supply or source-sink relations","volume":"91","author":"Rose","year":"2020","journal-title":"J. Cereal. Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib66","doi-asserted-by":"crossref","first-page":"1083","DOI":"10.1007\/s00299-007-0309-8","article-title":"Knockout of a starch synthase gene OsSSIIIa\/Flo5 causes white-core floury endosperm in rice (Oryza sativa L.)","volume":"26","author":"Ryoo","year":"2007","journal-title":"Plant Cell Rep."},{"key":"10.1016\/j.plaphy.2025.110981_bib67","doi-asserted-by":"crossref","first-page":"1332","DOI":"10.1016\/j.febslet.2005.01.029","article-title":"GC-MS libraries for the rapid identification of metabolites in complex biological samples","volume":"579","author":"Schauer","year":"2005","journal-title":"FEBS (Fed. Eur. Biochem. Soc.) Lett."},{"key":"10.1016\/j.plaphy.2025.110981_bib68","doi-asserted-by":"crossref","first-page":"7","DOI":"10.1007\/s12571-012-0168-1","article-title":"Crops that feed the world 7: rice","volume":"4","author":"Seck","year":"2012","journal-title":"Food Secur."},{"key":"10.1016\/j.plaphy.2025.110981_bib69","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res."},{"key":"10.1016\/j.plaphy.2025.110981_bib70","doi-asserted-by":"crossref","first-page":"712","DOI":"10.1016\/j.plaphy.2021.06.041","article-title":"Overexpression of OsPHR3 improves growth traits and facilitates nitrogen use efficiency under low phosphate condition","volume":"166","author":"Sun","year":"2021","journal-title":"Plant Physiol. Biochem."},{"key":"10.1016\/j.plaphy.2025.110981_bib71","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s12870-018-1462-7","article-title":"OsPHR3 affects the traits governing nitrogen homeostasis in rice","volume":"18","author":"Sun","year":"2018","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib72","doi-asserted-by":"crossref","first-page":"1255","DOI":"10.1104\/pp.15.01232","article-title":"Deficiency of starch synthase IIIa and IVb alters starch granule morphology from polyhedral to spherical in rice endosperm","volume":"170","author":"Toyosawa","year":"2016","journal-title":"Plant Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib73","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1016\/j.plantsci.2013.06.009","article-title":"Improving starch yield in cereals by over-expression of ADPglucose pyrophosphorylase: expectations and unanticipated outcomes","volume":"211","author":"Tuncel","year":"2013","journal-title":"Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib74","doi-asserted-by":"crossref","first-page":"306","DOI":"10.1111\/j.1469-8137.2012.04190.x","article-title":"Opportunities for improving phosphorus\u2010use efficiency in crop plants","volume":"195","author":"Veneklaas","year":"2012","journal-title":"New Phytol."},{"key":"10.1016\/j.plaphy.2025.110981_bib75","doi-asserted-by":"crossref","DOI":"10.1111\/tpj.17249","article-title":"Phosphate deficiency inducible OsGDPD5 affects root growth by regulating sugar\u2010auxin crosstalk","volume":"121","author":"Verma","year":"2025","journal-title":"Plant J."},{"key":"10.1016\/j.plaphy.2025.110981_bib76","doi-asserted-by":"crossref","first-page":"2893","DOI":"10.1016\/j.cub.2017.08.026","article-title":"PHO1 exports phosphate from the chalazal seed coat to the embryo in developing arabidopsis seeds","volume":"27","author":"Vogiatzaki","year":"2017","journal-title":"Curr. Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib77","first-page":"114","article-title":"Molecular mechanisms of phosphate transport and signaling in higher plants","volume":"vol. 74","author":"Wang","year":"2018"},{"key":"10.1016\/j.plaphy.2025.110981_bib78","doi-asserted-by":"crossref","first-page":"1221","DOI":"10.1093\/jxb\/erv517","article-title":"The knowns and unknowns of phosphorus loading into grains, and implications for phosphorus efficiency in cropping systems","volume":"67","author":"Wang","year":"2016","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.plaphy.2025.110981_bib79","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1007\/s11103-024-01488-z","article-title":"OsIPK1 frameshift mutations disturb phosphorus homeostasis and impair starch synthesis during grain filling in rice","volume":"114","author":"Wang","year":"2024","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib80","doi-asserted-by":"crossref","first-page":"564","DOI":"10.1093\/pcp\/pcab011","article-title":"Phosphate uptake and transport in plants: an elaborate regulatory system","volume":"62","author":"Wang","year":"2021","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.plaphy.2025.110981_bib81","doi-asserted-by":"crossref","first-page":"1507","DOI":"10.1111\/pbi.13372","article-title":"PANOMICS meets germplasm","volume":"18","author":"Weckwerth","year":"2020","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.plaphy.2025.110981_bib82","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2019.00827","article-title":"Transcriptional regulation of the glucose-6-phosphate\/phosphate translocator 2 is related to carbon exchange across the chloroplast envelope","volume":"10","author":"Weise","year":"2019","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib83","doi-asserted-by":"crossref","first-page":"1246","DOI":"10.1016\/j.molp.2017.06.004","article-title":"CRISPR-GE: a convenient software toolkit for CRISPR-based genome editing","volume":"10","author":"Xie","year":"2017","journal-title":"Mol. Plant"},{"key":"10.1016\/j.plaphy.2025.110981_bib84","doi-asserted-by":"crossref","first-page":"1232","DOI":"10.1016\/j.molp.2021.06.008","article-title":"Unloading phosphate for starch synthesis in cereal grains","volume":"14","author":"Xu","year":"2021","journal-title":"Mol. Plant"},{"key":"10.1016\/j.plaphy.2025.110981_bib85","doi-asserted-by":"crossref","first-page":"556","DOI":"10.1016\/j.tplants.2014.05.007","article-title":"The node, a hub for mineral nutrient distribution in graminaceous plants","volume":"19","author":"Yamaji","year":"2014","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.plaphy.2025.110981_bib86","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1016\/j.pbi.2017.05.002","article-title":"Node-controlled allocation of mineral elements in Poaceae","volume":"39","author":"Yamaji","year":"2017","journal-title":"Curr. Opin. Plant Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib87","doi-asserted-by":"crossref","first-page":"1413","DOI":"10.1007\/s00122-012-1922-7","article-title":"Identification and characterization of the soybean IPK1 ortholog of a low phytic acid mutant reveals an exon-excluding splice-site mutation","volume":"125","author":"Yuan","year":"2012","journal-title":"Theor. Appl. Genet."},{"key":"10.1016\/j.plaphy.2025.110981_bib88","doi-asserted-by":"crossref","first-page":"945","DOI":"10.1007\/s00122-007-0621-2","article-title":"Generation and characterization of two novel low phytate mutations in soybean (Glycine max L. Merr.)","volume":"115","author":"Yuan","year":"2007","journal-title":"Theor. Appl. Genet."},{"key":"10.1016\/j.plaphy.2025.110981_bib89","doi-asserted-by":"crossref","first-page":"1","DOI":"10.2202\/1544-6115.1128","article-title":"A general framework for weighted gene co-expression network analysis","volume":"4","author":"Zhang","year":"2005","journal-title":"Stat. Appl. Genet. Mol. Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib90","doi-asserted-by":"crossref","first-page":"669","DOI":"10.1111\/tpj.15410","article-title":"Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process","volume":"107","author":"Zhang","year":"2021","journal-title":"Plant J."},{"key":"10.1016\/j.plaphy.2025.110981_bib91","doi-asserted-by":"crossref","first-page":"555","DOI":"10.1111\/pbi.14203","article-title":"Cell\u2010type proteomic and metabolomic resolution of early and late grain filling stages of wheat endosperm","volume":"22","author":"Zhang","year":"2024","journal-title":"Plant Biotechnol. J."},{"key":"10.1016\/j.plaphy.2025.110981_bib92","doi-asserted-by":"crossref","first-page":"314","DOI":"10.1071\/FP06271","article-title":"Nutrient loading of developing seeds","volume":"34","author":"Zhang","year":"2007","journal-title":"Funct. Plant Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib93","doi-asserted-by":"crossref","first-page":"1891","DOI":"10.1007\/s00299-023-03068-9","article-title":"Origin, evolution, and diversification of the wall-associated kinase gene family in plants","volume":"42","author":"Zhang","year":"2023","journal-title":"Plant Cell Rep."},{"key":"10.1016\/j.plaphy.2025.110981_bib94","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1186\/s12870-024-05086-5","article-title":"A method for mining condition-specific co-expressed genes in Camellia sinensis based on k-means clustering","volume":"24","author":"Zheng","year":"2024","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.plaphy.2025.110981_bib95","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1007\/s12374-018-0288-z","article-title":"FLOURY ENDOSPERM12 encoding alanine aminotransferase 1 regulates carbon and nitrogen metabolism in rice","volume":"62","author":"Zhong","year":"2019","journal-title":"J. Plant Biol."}],"container-title":["Plant Physiology and Biochemistry"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0981942825015098?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0981942825015098?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,5,1]],"date-time":"2026-05-01T02:43:01Z","timestamp":1777603381000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0981942825015098"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,2]]},"references-count":94,"alternative-id":["S0981942825015098"],"URL":"https:\/\/doi.org\/10.1016\/j.plaphy.2025.110981","relation":{},"ISSN":["0981-9428"],"issn-type":[{"value":"0981-9428","type":"print"}],"subject":[],"published":{"date-parts":[[2026,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Network-based multiomics and transgenic validation reveal that OsPHR3 modulates phosphate-carbon metabolic trade-offs during rice seed development","name":"articletitle","label":"Article Title"},{"value":"Plant Physiology and Biochemistry","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.plaphy.2025.110981","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 The Authors. Published by Elsevier Masson SAS.","name":"copyright","label":"Copyright"}],"article-number":"110981"}}