{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,8]],"date-time":"2026-03-08T21:24:01Z","timestamp":1773005041507,"version":"3.50.1"},"reference-count":138,"publisher":"Elsevier BV","issue":"1","license":[{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,1,1]],"date-time":"2026-01-01T00:00:00Z","timestamp":1767225600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2025,9,2]],"date-time":"2025-09-02T00:00:00Z","timestamp":1756771200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["31811530297"],"award-info":[{"award-number":["31811530297"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001809","name":"National Natural Science Foundation of China","doi-asserted-by":"publisher","award":["32170217"],"award-info":[{"award-number":["32170217"]}],"id":[{"id":"10.13039\/501100001809","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Plant Diversity"],"published-print":{"date-parts":[[2026,1]]},"DOI":"10.1016\/j.pld.2025.09.003","type":"journal-article","created":{"date-parts":[[2025,9,9]],"date-time":"2025-09-09T00:06:16Z","timestamp":1757376376000},"page":"140-150","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":1,"title":["Complex plastome structural variation caused by intermolecular and intramolecular recombination accounts for leaf variegation in Heptapleurum ellipticum"],"prefix":"10.1016","volume":"48","author":[{"ORCID":"https:\/\/orcid.org\/0009-0008-2381-939X","authenticated-orcid":false,"given":"Kainan","family":"Ma","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shuaixi","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ying","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5836-8583","authenticated-orcid":false,"given":"Renchao","family":"Zhou","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.pld.2025.09.003_bib1","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1007\/BF00420317","article-title":"Recombination within the inverted repeat sequences of the Chlamydomonas reinhardii chloroplast genome produces two orientation isomers.","volume":"9","author":"Aldrich,","year":"1985","journal-title":"Curr. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib2","doi-asserted-by":"crossref","first-page":"373","DOI":"10.1007\/s11103-020-00997-x","article-title":"A point mutation in the photosystem I P700 chlorophyll a apoprotein A1 gene confers variegation in Helianthus annuus L.","volume":"103","author":"Azarin","year":"2020","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib3","doi-asserted-by":"crossref","first-page":"862","DOI":"10.1139\/b06-057","article-title":"A chloroplast DNA hairpin structure provides useful phylogenetic data within Tribe Senecioneae (Asteraceae)","volume":"84","author":"Ban","year":"2006","journal-title":"Can. J. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib4","doi-asserted-by":"crossref","DOI":"10.24072\/pcjournal.536","article-title":"Sequencing, de novo assembly of Ludwigia plastomes, and comparative analysis within the Onagraceae family","author":"Barloy-Hubler","year":"2025","journal-title":"Peer Community J."},{"key":"10.1016\/j.pld.2025.09.003_bib5","doi-asserted-by":"crossref","first-page":"330","DOI":"10.1007\/BF01990603","article-title":"Das wesen und die erblichkeitsverh\u00e4ltnisse der \u201evarietates albomarginatae hort.\u201cvon pelargonium zonale","volume":"1","author":"Baur","year":"1908","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib6","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1471-2229-6-21","article-title":"The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var. 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms","volume":"6","author":"Bausher","year":"2006","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib7","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1093\/aob\/mch114","article-title":"Ficus rubiginosa 'Variegata', a chlorophyll-deficient chimera with mosaic patterns created by cell divisions from the outer meristematic layer","volume":"94","author":"Beardsell","year":"2004","journal-title":"Ann. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib8","doi-asserted-by":"crossref","first-page":"279","DOI":"10.1002\/bies.950060608","article-title":"Why do chloroplasts and mitochondria contain so many copies of their genome?","volume":"6","author":"Bendich","year":"1987","journal-title":"Bioessays"},{"key":"10.1016\/j.pld.2025.09.003_bib9","doi-asserted-by":"crossref","first-page":"29293","DOI":"10.1074\/jbc.270.49.29293","article-title":"The deletion of petG in Chlamydomonas reinhardtii disrupts the cytochrome bf complex","volume":"270","author":"Berthold","year":"1995","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.pld.2025.09.003_bib10","doi-asserted-by":"crossref","first-page":"468","DOI":"10.1126\/science.6353578","article-title":"Relaxed cellular controls and organelle heredity","volume":"222","author":"Birky","year":"1983","journal-title":"Science"},{"key":"10.1016\/j.pld.2025.09.003_bib11","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib12","doi-asserted-by":"crossref","first-page":"6095","DOI":"10.1093\/emboj\/16.20.6095","article-title":"The chloroplast ycf3 and ycf4 open reading frames of Chlamydomonas reinhardtii are required for the accumulation of the photosystem I complex","volume":"16","author":"Boudreau","year":"1997","journal-title":"EMBO J."},{"key":"10.1016\/j.pld.2025.09.003_bib138","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2206973119","article-title":"Sorting of mitochondrial and plastid heteroplasmy in Arabidopsis is extremely rapid and depends on MSH1 activity","volume":"119","author":"Broz","year":"2022","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.pld.2025.09.003_bib13","doi-asserted-by":"crossref","first-page":"896","DOI":"10.1111\/nph.19288","article-title":"Stochastic organelle genome segregation through Arabidopsis development and reproduction","volume":"241","author":"Broz","year":"2024","journal-title":"New Phytol."},{"key":"10.1016\/j.pld.2025.09.003_bib14","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1007\/s00425-021-03773-3","article-title":"Occurrence of albinism during wheat androgenesis is correlated with repression of the key genes required for proper chloroplast biogenesis","volume":"254","author":"Canonge","year":"2021","journal-title":"Planta"},{"key":"10.1016\/j.pld.2025.09.003_bib15","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1023\/A:1025812621775","article-title":"Plastid ultrastructure and DNA related to albinism in androgenetic embryos of various barley (Hordeum vulgare L.) cultivars","volume":"76","author":"Caredda","year":"2004","journal-title":"Plant Cell Tissue Organ Cult."},{"key":"10.1016\/j.pld.2025.09.003_bib16","doi-asserted-by":"crossref","first-page":"evab215","DOI":"10.1093\/gbe\/evab215","article-title":"Plastome structural evolution and homoplastic inversions in Neo-Astragalus (Fabaceae)","volume":"13","author":"Charboneau","year":"2021","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib17","doi-asserted-by":"crossref","first-page":"293","DOI":"10.1093\/jhered\/93.4.293","article-title":"A case of chloroplast heteroplasmy in kiwifruit (Actinidia deliciosa) that is not transmitted during sexual reproduction","volume":"93","author":"Chat","year":"2002","journal-title":"J. Hered."},{"key":"10.1016\/j.pld.2025.09.003_bib18","doi-asserted-by":"crossref","first-page":"590","DOI":"10.1111\/j.1365-313X.2008.03634.x","article-title":"CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts","volume":"56","author":"Chateigner-Boutin","year":"2008","journal-title":"Plant J."},{"key":"10.1016\/j.pld.2025.09.003_bib19","doi-asserted-by":"crossref","first-page":"4380","DOI":"10.1073\/pnas.95.8.4380","article-title":"Translation of cytochrome f is autoregulated through the 5' untranslated region of petA mRNA in Chlamydomonas chloroplasts","volume":"95","author":"Choquet","year":"1998","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.pld.2025.09.003_bib20","series-title":"Encyclopedia of Biological Chemistry III","first-page":"426","article-title":"Structure-function of the cytochrome b6f lipoprotein complex","volume":"vol. 2","author":"Cramer","year":"2021"},{"key":"10.1016\/j.pld.2025.09.003_bib21","doi-asserted-by":"crossref","first-page":"giab008","DOI":"10.1093\/gigascience\/giab008","article-title":"Twelve years of SAMtools and BCFtools","volume":"10","author":"Danecek","year":"2021","journal-title":"GigaScience"},{"key":"10.1016\/j.pld.2025.09.003_bib22","doi-asserted-by":"crossref","first-page":"359","DOI":"10.1016\/0092-8674(84)90014-X","article-title":"Chloroplast DNA deletions associated with wheat plants regenerated from pollen: possible basis for maternal inheritance of chloroplasts","volume":"39","author":"Day","year":"1984","journal-title":"Cell"},{"key":"10.1016\/j.pld.2025.09.003_bib23","doi-asserted-by":"crossref","first-page":"2666","DOI":"10.1093\/bioinformatics\/bty149","article-title":"NanoPack: visualizing and processing long-read sequencing data","volume":"34","author":"De Coster","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib24","doi-asserted-by":"crossref","first-page":"1229","DOI":"10.1007\/s00425-019-03217-z","article-title":"The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats","volume":"250","author":"de Santana Lopes","year":"2019","journal-title":"Planta"},{"key":"10.1016\/j.pld.2025.09.003_bib25","doi-asserted-by":"crossref","first-page":"429","DOI":"10.1006\/mpev.1996.0038","article-title":"The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae","volume":"5","author":"Doyle","year":"1996","journal-title":"Mol. Phylogenet. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib26","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1016\/j.ydbio.2016.07.003","article-title":"Plant chimeras: the good, the bad, and the 'Bizzaria'","volume":"419","author":"Frank","year":"2016","journal-title":"Dev. Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib27","doi-asserted-by":"crossref","first-page":"22","DOI":"10.1186\/s12870-020-02755-z","article-title":"Changes in plastid biogenesis leading to the formation of albino regenerants in barley microspore culture","volume":"21","author":"Gajecka","year":"2021","journal-title":"BMC Plant Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib28","doi-asserted-by":"crossref","first-page":"3028","DOI":"10.1093\/nar\/gkz039","article-title":"Plant organellar DNA polymerases repair double-stranded breaks by microhomology-mediated end-joining","volume":"47","author":"Garc\u00eda-Medel","year":"2019","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.pld.2025.09.003_bib29","doi-asserted-by":"crossref","first-page":"847","DOI":"10.1105\/tpc.113.117465","article-title":"Chloroplast DNA in mature and senescing leaves: a reappraisal","volume":"26","author":"Golczyk","year":"2014","journal-title":"Plant Cell"},{"key":"10.1016\/j.pld.2025.09.003_bib30","doi-asserted-by":"crossref","first-page":"644","DOI":"10.1038\/nbt.1883","article-title":"Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data","volume":"29","author":"Grabherr","year":"2011","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.pld.2025.09.003_bib31","doi-asserted-by":"crossref","first-page":"34","DOI":"10.1111\/j.1365-313X.2011.04541.x","article-title":"Chloroplast genomes of photosynthetic eukaryotes","volume":"66","author":"Green","year":"2011","journal-title":"Plant J."},{"key":"10.1016\/j.pld.2025.09.003_bib32","series-title":"Genomics of Chloroplasts and Mitochondria","first-page":"237","article-title":"Plastome mutants of higher plants","author":"Greiner","year":"2012"},{"key":"10.1016\/j.pld.2025.09.003_bib33","doi-asserted-by":"crossref","first-page":"963","DOI":"10.2307\/3869664","article-title":"Analysis of leaf sectors in the NCS6 mitochondrial mutant of maize","volume":"5","author":"Gu","year":"1993","journal-title":"Plant Cell"},{"key":"10.1016\/j.pld.2025.09.003_bib34","doi-asserted-by":"crossref","first-page":"580","DOI":"10.1093\/gbe\/evu046","article-title":"Predominant and substoichiometric isomers of the plastid genome coexist within Juniperus plants and have shifted multiple times during cupressophyte evolution","volume":"6","author":"Guo","year":"2014","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib35","doi-asserted-by":"crossref","first-page":"2660","DOI":"10.1093\/pcp\/pcz203","article-title":"DAY-LENGTH-DEPENDENT DELAYED-GREENING1, the Arabidopsis homolog of the cyanobacterial H+-extrusion protein, is essential for chloroplast pH regulation and optimization of non-photochemical quenching","volume":"60","author":"Harada","year":"2019","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.pld.2025.09.003_bib36","doi-asserted-by":"crossref","first-page":"157","DOI":"10.1007\/BF00215717","article-title":"Large-scale deletions of rice plastid DNA in anther culture","volume":"81","author":"Harada","year":"1991","journal-title":"Theor. Appl. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib37","series-title":"Applications of Plant Cell and Tissue Culture","first-page":"113","article-title":"Analysis of chloroplast genomes in parasexual hybrid calli","author":"Hirai","year":"2007"},{"key":"10.1016\/j.pld.2025.09.003_bib38","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1007\/s00294-009-0247-9","article-title":"A frameshift mutation of the chloroplast matK coding region is associated with chlorophyll deficiency in the Cryptomeria japonica virescent mutant Wogon-Sugi","volume":"55","author":"Hirao","year":"2009","journal-title":"Curr. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib39","doi-asserted-by":"crossref","first-page":"185","DOI":"10.1007\/BF02464880","article-title":"The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals","volume":"217","author":"Hiratsuka","year":"1989","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib40","doi-asserted-by":"crossref","first-page":"95","DOI":"10.1007\/BF00330389","article-title":"Location and nucleotide sequence of the gene for cytochrome b-559 in wheat chloroplast DNA","volume":"203","author":"Hird","year":"1986","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib41","doi-asserted-by":"crossref","first-page":"1776","DOI":"10.1093\/gbe\/evw109","article-title":"Birth of four chimeric plastid gene clusters in Japanese umbrella pine","volume":"8","author":"Hsu","year":"2016","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib42","doi-asserted-by":"crossref","first-page":"306","DOI":"10.1186\/s12864-015-1498-0","article-title":"Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats","volume":"16","author":"Hu","year":"2015","journal-title":"BMC Genom."},{"key":"10.1016\/j.pld.2025.09.003_bib43","doi-asserted-by":"crossref","first-page":"2669","DOI":"10.1046\/j.0962-1083.2001.01395.x","article-title":"Organelle DNA phylogeography of Cycas taitungensis, a relict species in Taiwan","volume":"10","author":"Huang","year":"2001","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.pld.2025.09.003_bib44","doi-asserted-by":"crossref","first-page":"241","DOI":"10.1186\/s13059-020-02154-5","article-title":"GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes","volume":"21","author":"Jin","year":"2020","journal-title":"Genome Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib45","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1007\/BF00017442","article-title":"Heteroplasmy of chloroplast DNA in Medicago","volume":"12","author":"Johnson","year":"1989","journal-title":"Plant Mol. Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib46","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1007\/BF00838712","article-title":"Variations in chloroplast DNA from rice (Oryza sativa): differences between deletions mediated by short direct-repeat sequences within a single species","volume":"86","author":"Kanno","year":"1993","journal-title":"Theor. Appl. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib47","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1007\/s002940050193","article-title":"Short inverted repeats function as hotspots of intermolecular recombination giving rise to oligomers of deleted plastid DNAs (ptDNAs)","volume":"31","author":"Kawata","year":"1997","journal-title":"Curr. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib48","doi-asserted-by":"crossref","DOI":"10.1093\/molbev\/msae135","article-title":"Heteroplasmy is rare in plant mitochondria compared with plastids despite similar mutation rates","volume":"41","author":"Khachaturyan","year":"2024","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib49","doi-asserted-by":"crossref","first-page":"907","DOI":"10.1038\/s41587-019-0201-4","article-title":"Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype","volume":"37","author":"Kim","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.pld.2025.09.003_bib50","doi-asserted-by":"crossref","first-page":"1783","DOI":"10.1093\/molbev\/msi174","article-title":"Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae)","volume":"22","author":"Kim","year":"2005","journal-title":"Mol. Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib51","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1016\/S1016-8478(23)13143-8","article-title":"Widespread occurrence of small inversions in the chloroplast genomes of land plants","volume":"19","author":"Kim","year":"2005","journal-title":"Mol. Cells"},{"key":"10.1016\/j.pld.2025.09.003_bib52","doi-asserted-by":"crossref","first-page":"398","DOI":"10.1086\/297356","article-title":"Mangrove genetics. IV. Postzygotic mutations fixed as periclinal chimeras","volume":"157","author":"Klekowski","year":"1996","journal-title":"Int. J. Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib53","doi-asserted-by":"crossref","first-page":"11097","DOI":"10.1073\/pnas.1403363111","article-title":"The dynamic history of plastid genomes in the Campanulaceae sensu lato is unique among angiosperms","volume":"111","author":"Knox","year":"2014","journal-title":"Proc. Natl. Acad. Sci. U. S. A"},{"key":"10.1016\/j.pld.2025.09.003_bib54","doi-asserted-by":"crossref","first-page":"41","DOI":"10.1073\/pnas.76.1.41","article-title":"Inverted repeats in chloroplast DNA from higher plants","volume":"76","author":"Kolodner","year":"1979","journal-title":"Proc. Natl. Acad. Sci. U. S. A"},{"key":"10.1016\/j.pld.2025.09.003_bib55","doi-asserted-by":"crossref","first-page":"1062","DOI":"10.1111\/tpj.12256","article-title":"Reverse genetics in complex multigene operons by co-transformation of the plastid genome and its application to the open reading frame previously designated psbN","volume":"75","author":"Krech","year":"2013","journal-title":"Plant J."},{"key":"10.1016\/j.pld.2025.09.003_bib56","doi-asserted-by":"crossref","first-page":"579","DOI":"10.1104\/pp.112.196642","article-title":"The plastid genome-encoded Ycf4 protein functions as a nonessential assembly factor for photosystem I in higher plants","volume":"159","author":"Krech","year":"2012","journal-title":"Plant Physiol."},{"key":"10.1016\/j.pld.2025.09.003_bib57","doi-asserted-by":"crossref","first-page":"1026","DOI":"10.1093\/bioinformatics\/btm039","article-title":"Gepard: a rapid and sensitive tool for creating dotplots on genome scale","volume":"23","author":"Krumsiek","year":"2007","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib58","doi-asserted-by":"crossref","first-page":"393","DOI":"10.1080\/07352680903133252","article-title":"Albinism in plants: a major bottleneck in wide hybridization, androgenesis and doubled haploid culture","volume":"28","author":"Kumari","year":"2009","journal-title":"Crit. Rev. Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib59","doi-asserted-by":"crossref","first-page":"13954","DOI":"10.1073\/pnas.1004326107","article-title":"Microhomology-mediated and nonhomologous repair of a double-strand break in the chloroplast genome of Arabidopsis","volume":"107","author":"Kwon","year":"2010","journal-title":"Proc. Natl. Acad. Sci. U. S. A"},{"key":"10.1016\/j.pld.2025.09.003_bib60","doi-asserted-by":"crossref","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: consistent and rapid annotation of ribosomal RNA genes","volume":"35","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.pld.2025.09.003_bib61","doi-asserted-by":"crossref","first-page":"2443","DOI":"10.1007\/s10530-016-1193-3","article-title":"Heteroplasmy due to chloroplast paternal leakage: another insight into Phragmites haplotypic diversity in North America","volume":"18","author":"Lambertini","year":"2016","journal-title":"Biol. Invasions"},{"key":"10.1016\/j.pld.2025.09.003_bib62","doi-asserted-by":"crossref","first-page":"861","DOI":"10.1111\/tpj.15351","article-title":"The chicken or the egg? Plastome evolution and an independent loss of the inverted repeat in papilionoid legumes","volume":"107","author":"Lee","year":"2021","journal-title":"Plant J."},{"key":"10.1016\/j.pld.2025.09.003_bib63","doi-asserted-by":"crossref","first-page":"641","DOI":"10.1093\/gbe\/evaa076","article-title":"Unprecedented intraindividual structural heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes","volume":"12","author":"Lee","year":"2020","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib64","doi-asserted-by":"crossref","first-page":"3094","DOI":"10.1093\/bioinformatics\/bty191","article-title":"Minimap2: pairwise alignment for nucleotide sequences","volume":"34","author":"Li","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib65","doi-asserted-by":"crossref","first-page":"589","DOI":"10.1093\/bioinformatics\/btp698","article-title":"Fast and accurate long-read alignment with Burrows\u2013Wheeler transform","volume":"26","author":"Li","year":"2010","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib66","doi-asserted-by":"crossref","first-page":"1658","DOI":"10.1093\/bioinformatics\/btl158","article-title":"Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences","volume":"22","author":"Li","year":"2006","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib67","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1038\/cr.2008.1","article-title":"Homologous recombination in DNA repair and DNA damage tolerance","volume":"18","author":"Li","year":"2008","journal-title":"Cell Res."},{"key":"10.1016\/j.pld.2025.09.003_bib68","doi-asserted-by":"crossref","first-page":"270","DOI":"10.21273\/JASHS.133.2.270","article-title":"Differential protein expression of two photosystem II subunits, PsbO and PsbP, in an albino mutant of Bambusa edulis with chloroplast DNA aberration","volume":"133","author":"Lin","year":"2008","journal-title":"J. Am. Soc. Hortic. Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib69","article-title":"Complete chloroplast genome sequences of Mongolia medicine Artemisia frigida and phylogenetic relationships with other plants","volume":"8","author":"Liu","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.pld.2025.09.003_bib70","doi-asserted-by":"crossref","first-page":"W575","DOI":"10.1093\/nar\/gkt289","article-title":"OrganellarGenomeDRAW\u2014a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets","volume":"41","author":"Lohse","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.pld.2025.09.003_bib71","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib72","doi-asserted-by":"crossref","first-page":"513","DOI":"10.1086\/320138","article-title":"Genetic mosaics and the analysis of leaf development","volume":"162","author":"Marcotrigiano","year":"2001","journal-title":"Int. J. Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib73","doi-asserted-by":"crossref","first-page":"193","DOI":"10.1046\/j.1365-313X.1995.7020193.x","article-title":"Arrangement of cell layers in the shoot apical meristems of periclinal chimeras influences cell fate","volume":"7","author":"Marcotrigiano","year":"2003","journal-title":"Plant J."},{"key":"10.1016\/j.pld.2025.09.003_bib74","article-title":"The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution","volume":"8","author":"Martin","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.pld.2025.09.003_bib75","doi-asserted-by":"crossref","first-page":"1197","DOI":"10.1093\/aob\/mcu050","article-title":"The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family","volume":"113","author":"Martin","year":"2014","journal-title":"Ann. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib76","doi-asserted-by":"crossref","first-page":"920","DOI":"10.1016\/j.bbabio.2009.03.001","article-title":"Functional characterization of the thylakoid Ndh complex phosphorylation by site-directed mutations in the ndhF gene","volume":"1787","author":"Mart\u00edn","year":"2009","journal-title":"Biochim. Biophys. Acta Bioenerg."},{"key":"10.1016\/j.pld.2025.09.003_bib77","doi-asserted-by":"crossref","first-page":"911","DOI":"10.1105\/tpc.15.00879","article-title":"Spontaneous chloroplast mutants mostly occur by replication slippage and show a biased pattern in the plastome of Oenothera","volume":"28","author":"Massouh","year":"2016","journal-title":"Plant Cell"},{"key":"10.1016\/j.pld.2025.09.003_bib78","doi-asserted-by":"crossref","first-page":"611","DOI":"10.1093\/nar\/15.2.611","article-title":"Rice chloroplast DNA molecules are heterogeneous as revealed by DNA sequences of a cluster of genes","volume":"15","author":"Moon","year":"1987","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.pld.2025.09.003_bib79","doi-asserted-by":"crossref","first-page":"467","DOI":"10.1556\/CRC.40.2012.0007","article-title":"Structural changes in chloroplast genome accompanying albinism in anther culture of wheat and triticale","volume":"40","author":"Mozgova","year":"2012","journal-title":"Cereal Res. Commun."},{"key":"10.1016\/j.pld.2025.09.003_bib80","doi-asserted-by":"crossref","first-page":"265","DOI":"10.1007\/BF00351505","article-title":"In-frame length mutations associated with short tandem repeats are located in unassigned open reading frames of Oenothera chloroplast DNA","volume":"23","author":"Nimzyk","year":"1993","journal-title":"Curr. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib81","doi-asserted-by":"crossref","first-page":"8573","DOI":"10.1073\/pnas.85.22.8573","article-title":"Intramolecular recombination of chloroplast genome mediated by short direct-repeat sequences in wheat species","volume":"85","author":"Ogihara","year":"1988","journal-title":"Proc. Natl. Acad. Sci. U. S. A"},{"key":"10.1016\/j.pld.2025.09.003_bib82","doi-asserted-by":"crossref","first-page":"85","DOI":"10.1016\/j.tig.2014.01.001","article-title":"The role of microhomology in genomic structural variation","volume":"30","author":"Ottaviani","year":"2014","journal-title":"Trends Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib83","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1038\/301092a0","article-title":"Chloroplast DNA exists in two orientations","volume":"301","author":"Palmer","year":"1983","journal-title":"Nature"},{"key":"10.1016\/j.pld.2025.09.003_bib84","doi-asserted-by":"crossref","first-page":"769","DOI":"10.1073\/pnas.84.3.769","article-title":"Unusual structure of geranium chloroplast DNA: a triple-sized inverted repeat, extensive gene duplications, multiple inversions, and two repeat families","volume":"84","author":"Palmer","year":"1987","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.pld.2025.09.003_bib85","article-title":"High-throughput discovery of plastid genes causing albino phenotypes in ornamental chimeric plants","volume":"10","author":"Park","year":"2022","journal-title":"Hortic. Res."},{"key":"10.1016\/j.pld.2025.09.003_bib86","doi-asserted-by":"crossref","first-page":"290","DOI":"10.1038\/nbt.3122","article-title":"StringTie enables improved reconstruction of a transcriptome from RNA-seq reads","volume":"33","author":"Pertea","year":"2015","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.pld.2025.09.003_bib87","doi-asserted-by":"crossref","first-page":"6957","DOI":"10.1093\/jxb\/erv415","article-title":"Plastid RNA polymerases: orchestration of enzymes with different evolutionary origins controls chloroplast biogenesis during the plant life cycle","volume":"66","author":"Pfannschmidt","year":"2015","journal-title":"J. Exp. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib88","doi-asserted-by":"crossref","first-page":"450","DOI":"10.1104\/pp.16.00647","article-title":"The low molecular weight protein PsaI stabilizes the light-harvesting complex II docking site of photosystem I","volume":"172","author":"Pl\u00f6chinger","year":"2016","journal-title":"Plant Physiol."},{"key":"10.1016\/j.pld.2025.09.003_bib89","first-page":"249","article-title":"Principal types of vegetative shoot apex organization in vascular plants","volume":"51","author":"Popham","year":"1951","journal-title":"Biol. Environ. Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib90","doi-asserted-by":"crossref","first-page":"1110","DOI":"10.1093\/gbe\/evx071","article-title":"Insights into the existence of isomeric plastomes in Cupressoideae (Cupressaceae)","volume":"9","author":"Qu","year":"2017","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib91","series-title":"R: a Language and Environment for Statistical Computing","year":"2022"},{"key":"10.1016\/j.pld.2025.09.003_bib92","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/0168-9452(94)90101-5","article-title":"Interdependence of photosynthesis and respiration in plant cells: interactions between chloroplasts and mitochondria","volume":"97","author":"Raghavendra","year":"1994","journal-title":"Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib93","doi-asserted-by":"crossref","first-page":"132","DOI":"10.1038\/hdy.1994.19","article-title":"Organelle inheritance in plants","volume":"72","author":"Reboud","year":"1994","journal-title":"Heredity"},{"key":"10.1016\/j.pld.2025.09.003_bib94","doi-asserted-by":"crossref","first-page":"41473","DOI":"10.1074\/jbc.M102007200","article-title":"Deregulation of electron flow within photosystem II in the absence of the PsbJ protein","volume":"276","author":"Regel","year":"2001","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.pld.2025.09.003_bib95","doi-asserted-by":"crossref","first-page":"471","DOI":"10.1016\/S1360-1385(01)02085-4","article-title":"Pathways of plastid-to-nucleus signaling","volume":"6","author":"Rodermel","year":"2001","journal-title":"Trends Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib96","doi-asserted-by":"crossref","first-page":"28","DOI":"10.1007\/BF01993734","article-title":"Histologische studien an phanerogamen vegetationspunkten. Zeitschrift f\u00fcr wissenschaftliche Biologie. Abteilung E","volume":"5","author":"R\u00f6sler","year":"1928","journal-title":"Planta"},{"key":"10.1016\/j.pld.2025.09.003_bib97","series-title":"Chloroplast Biotechnology: Methods and Protocols","first-page":"3","article-title":"The plastid genomes of flowering plants","author":"Ruhlman","year":"2014"},{"key":"10.1016\/j.pld.2025.09.003_bib98","article-title":"Concurrent triplication and uniparental isodisomy: evidence for microhomology-mediated break-induced replication model for genomic rearrangements","author":"Sahoo","year":"2014","journal-title":"Eur. J. Hum. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib99","doi-asserted-by":"crossref","first-page":"484","DOI":"10.1093\/pcp\/pcad104","article-title":"Plastid inheritance revisited: emerging role of organelle DNA degradation in angiosperms","volume":"65","author":"Sakamoto","year":"2023","journal-title":"Plant Cell Physiol."},{"key":"10.1016\/j.pld.2025.09.003_bib100","doi-asserted-by":"crossref","first-page":"895","DOI":"10.1002\/j.1537-2197.1940.tb13952.x","article-title":"Demonstration of the three germ layers in the shoot apex of Datura by means of induced polyploidy in periclinal chimeras","volume":"27","author":"Satina","year":"1940","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib101","doi-asserted-by":"crossref","first-page":"434","DOI":"10.1111\/1755-0998.12462","article-title":"Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?","volume":"16","author":"Scarcelli","year":"2016","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.pld.2025.09.003_bib102","doi-asserted-by":"crossref","first-page":"533","DOI":"10.1007\/BF00290579","article-title":"Detection of point mutations in chloroplast genes of Antirrhinum majus L. I. Identification of a point mutation in the psaB gene of a photosystem I plastome mutant","volume":"249","author":"Schaffner","year":"1995","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib103","doi-asserted-by":"crossref","first-page":"18402","DOI":"10.1016\/S0021-9258(18)51479-4","article-title":"The primary structure of a 4.0-kDa photosystem I polypeptide encoded by the chloroplast psaI gene","volume":"264","author":"Scheller","year":"1989","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.pld.2025.09.003_bib104","doi-asserted-by":"crossref","first-page":"133","DOI":"10.1016\/j.gene.2004.06.008","article-title":"The complete nucleotide sequence of wild rice (Oryza nivara) chloroplast genome: first genome wide comparative sequence analysis of wild and cultivated rice","volume":"340","author":"Shahid Masood","year":"2004","journal-title":"Gene"},{"key":"10.1016\/j.pld.2025.09.003_bib105","doi-asserted-by":"crossref","first-page":"2278","DOI":"10.3390\/ijms22052278","article-title":"Clade-specific plastid inheritance patterns including frequent biparental inheritance in Passiflora interspecific crosses","volume":"22","author":"Shrestha","year":"2021","journal-title":"Int. J. Mol. Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib106","doi-asserted-by":"crossref","first-page":"761","DOI":"10.1111\/plb.13146","article-title":"Albinism in plants \u2013 far beyond the loss of chlorophyll: structural and physiological aspects of wild-type and albino royal poinciana (Delonix regia) seedlings","volume":"22","author":"Silva","year":"2020","journal-title":"Plant Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib107","doi-asserted-by":"crossref","first-page":"71","DOI":"10.1002\/ajb2.1001","article-title":"Total duplication of the small single copy region in the angiosperm plastome: rearrangement and inverted repeat instability in Asarum","volume":"105","author":"Sinn","year":"2018","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib108","first-page":"361","article-title":"Biparental inheritance of organelles and its implications in crop improvement","volume":"vol. 6","author":"Smith","year":"1989"},{"key":"10.1016\/j.pld.2025.09.003_bib109","doi-asserted-by":"crossref","first-page":"835","DOI":"10.1007\/BF00418530","article-title":"Structural evolution and flip-flop recombination of chloroplast DNA in the fern genus Osmunda","volume":"10","author":"Stein","year":"1986","journal-title":"Curr. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib110","doi-asserted-by":"crossref","first-page":"1010","DOI":"10.1002\/j.1537-2197.1970.tb09902.x","article-title":"Independence of tissues derived from apical layers in ontogeny of the tobacco leaf and ovary","volume":"57","author":"Stewart","year":"1970","journal-title":"Am. J. Bot."},{"key":"10.1016\/j.pld.2025.09.003_bib111","doi-asserted-by":"crossref","first-page":"454","DOI":"10.1016\/j.molp.2022.01.020","article-title":"Supramolecular assembly of chloroplast NADH dehydrogenase-like complex with photosystem I from Arabidopsis thaliana","volume":"15","author":"Su","year":"2022","journal-title":"Mol. Plant"},{"key":"10.1016\/j.pld.2025.09.003_bib112","doi-asserted-by":"crossref","DOI":"10.7717\/peerj.8025","article-title":"Intra-individual heteroplasmy in the Gentiana tongolensis plastid genome (Gentianaceae)","volume":"7","author":"Sun","year":"2019","journal-title":"PeerJ"},{"key":"10.1016\/j.pld.2025.09.003_bib113","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1006\/dbio.1993.1023","article-title":"Origin and development of adventitious shoot meristems initiated on plant chimeras","volume":"155","author":"Tian","year":"1993","journal-title":"Dev. Biol."},{"key":"10.1016\/j.pld.2025.09.003_bib114","doi-asserted-by":"crossref","first-page":"W6","DOI":"10.1093\/nar\/gkx391","article-title":"GeSeq\u2013versatile and accurate annotation of organelle genomes","volume":"45","author":"Tillich","year":"2017","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.pld.2025.09.003_bib115","series-title":"Genetics and Biogenesis of Mitochondria and Chloroplasts","first-page":"268","article-title":"Genetics of variegated plants","author":"Tilney-Bassett","year":"1975"},{"key":"10.1016\/j.pld.2025.09.003_bib116","series-title":"Plant Chimeras","author":"Tilney-Bassett","year":"1986"},{"key":"10.1016\/j.pld.2025.09.003_bib117","first-page":"D523","article-title":"UniProt: the universal protein knowledgebase in 2023","volume":"51","year":"2022","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.pld.2025.09.003_bib118","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1007\/BF00446957","article-title":"A model for the rapid vegetative segregation of multiple chloroplast genomes in Chlamydomonas: assumptions and predictions of the model","volume":"1","author":"Vanwinkle-Swift","year":"1980","journal-title":"Curr. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib119","doi-asserted-by":"crossref","first-page":"196","DOI":"10.1126\/science.208.4440.196","article-title":"Organelle alteration as a mechanism for maternal inheritance","volume":"208","author":"Vaughn","year":"1980","journal-title":"Science"},{"key":"10.1016\/j.pld.2025.09.003_bib120","first-page":"518","article-title":"A ribosomal protein gene (rpl32) from tobacco chloroplast DNA is transcribed from alternative promoters: similarities in promoter region organization in plastid housekeeping genes","volume":"251","author":"Vera","year":"1996","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib121","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1007\/BF00587573","article-title":"Active transcription from a promoter positioned within the coding region of a divergently oriented gene: the tobacco chloroplast rp132 gene","volume":"233","author":"Vera","year":"1992","journal-title":"Mol. Gen. Genet."},{"key":"10.1016\/j.pld.2025.09.003_bib122","doi-asserted-by":"crossref","first-page":"3064","DOI":"10.1073\/pnas.68.12.3064","article-title":"Three forms of cytochrome b 559 and their relation to the photosynthetic activity of chloroplasts","volume":"68","author":"Wada","year":"1971","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.pld.2025.09.003_bib123","first-page":"3372","article-title":"Long-reads reveal that the chloroplast genome exists in two distinct versions in most plants","volume":"11","author":"Wang","year":"2019","journal-title":"Genome Biol. Evol."},{"key":"10.1016\/j.pld.2025.09.003_bib124","doi-asserted-by":"crossref","DOI":"10.1016\/j.indcrop.2023.116964","article-title":"Integrated cytological, physiological, and transcriptome analysis of the bud mutant of jujube (Ziziphus jujuba Mill.) with non-lethal albino phenotype","volume":"201","author":"Wang","year":"2023","journal-title":"Ind. Crops Prod."},{"key":"10.1016\/j.pld.2025.09.003_bib125","doi-asserted-by":"crossref","first-page":"3350","DOI":"10.1093\/bioinformatics\/btv383","article-title":"Bandage: interactive visualization of de novo genome assemblies","volume":"31","author":"Wick","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.pld.2025.09.003_bib126","series-title":"ggplot2: Elegant Graphics for Data Analysis","author":"Wickham","year":"2016"},{"key":"10.1016\/j.pld.2025.09.003_bib127","doi-asserted-by":"crossref","first-page":"1419","DOI":"10.1007\/s00299-023-03039-0","article-title":"Chimeric deletion mutation of rpoC2 underlies the leaf-patterning of Clivia miniata var. variegata","volume":"42","author":"Wu","year":"2023","journal-title":"Plant Cell Rep."},{"key":"10.1016\/j.pld.2025.09.003_bib128","doi-asserted-by":"crossref","first-page":"16243","DOI":"10.1074\/jbc.270.27.16243","article-title":"Mutational analysis of photosystem I polypeptides in the cyanobacterium Synechocystis sp. PCC 6803. Targeted inactivation of psaI reveals the function of psaI in the structural organization of psaL","volume":"270","author":"Xu","year":"1995","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.pld.2025.09.003_bib129","doi-asserted-by":"crossref","DOI":"10.3389\/fpls.2022.1047090","article-title":"Cytological, genetic and transcriptomic characterization of a cucumber albino mutant","volume":"13","author":"Yan","year":"2022","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib130","doi-asserted-by":"crossref","first-page":"139","DOI":"10.3389\/fpls.2015.00139","article-title":"Phenotype and transcriptome analysis reveals chloroplast development and pigment biosynthesis together influenced the leaf color formation in mutants of Anthurium andraeanum 'Sonate'","volume":"6","author":"Yang","year":"2015","journal-title":"Front. Plant Sci."},{"key":"10.1016\/j.pld.2025.09.003_bib131","doi-asserted-by":"crossref","first-page":"350","DOI":"10.1111\/j.1365-3040.2006.01630.x","article-title":"Variegation mutants and mechanisms of chloroplast biogenesis","volume":"30","author":"Yu","year":"2007","journal-title":"Plant Cell Environ."},{"key":"10.1016\/j.pld.2025.09.003_bib132","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1104\/pp.17.00857","article-title":"Efficient plastid transformation in Arabidopsis","volume":"175","author":"Yu","year":"2017","journal-title":"Plant Physiol."},{"key":"10.1016\/j.pld.2025.09.003_bib133","doi-asserted-by":"crossref","first-page":"58","DOI":"10.1016\/j.gene.2014.07.041","article-title":"Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species","volume":"549","author":"Zhang","year":"2014","journal-title":"Gene"},{"key":"10.1016\/j.pld.2025.09.003_bib134","doi-asserted-by":"crossref","first-page":"16122","DOI":"10.1074\/jbc.273.26.16122","article-title":"Isolation and characterization of monomeric and dimeric CP47-reaction center photosystem II complexes","volume":"273","author":"Zheleva","year":"1998","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.pld.2025.09.003_bib135","doi-asserted-by":"crossref","DOI":"10.1093\/hr\/uhae009","article-title":"Leaf variegation caused by plastome structural variation: an example from Dianella tasmanica","volume":"11","author":"Zhou","year":"2024","journal-title":"Hortic. Res."},{"key":"10.1016\/j.pld.2025.09.003_bib136","doi-asserted-by":"crossref","first-page":"1442","DOI":"10.1111\/1755-0998.13787","article-title":"Plastid genome assembly using long-read data","volume":"23","author":"Zhou","year":"2023","journal-title":"Mol. Ecol. Resour."},{"key":"10.1016\/j.pld.2025.09.003_bib137","doi-asserted-by":"crossref","first-page":"4685","DOI":"10.3109\/19401736.2015.1106502","article-title":"The complete chloroplast genome sequence of Schefflera octophylla","volume":"27","author":"Zong","year":"2015","journal-title":"Mitochondrial DNA"}],"container-title":["Plant Diversity"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2468265925001647?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S2468265925001647?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,3,8]],"date-time":"2026-03-08T18:54:40Z","timestamp":1772996080000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S2468265925001647"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,1]]},"references-count":138,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2026,1]]}},"alternative-id":["S2468265925001647"],"URL":"https:\/\/doi.org\/10.1016\/j.pld.2025.09.003","relation":{},"ISSN":["2468-2659"],"issn-type":[{"value":"2468-2659","type":"print"}],"subject":[],"published":{"date-parts":[[2026,1]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Complex plastome structural variation caused by intermolecular and intramolecular recombination accounts for leaf variegation in Heptapleurum ellipticum","name":"articletitle","label":"Article Title"},{"value":"Plant Diversity","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.pld.2025.09.003","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2025 Kunming Institute of Botany, Chinese Academy of Sciences. Publishing services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.","name":"copyright","label":"Copyright"}]}}