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Bioinformat."},{"key":"10.1016\/j.pld.2025.09.004_bib105","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1007\/BF00346399","article-title":"Ecological genetics of the cave beetle Neaphaenops tellkampfii (Coleoptera: Carabidae)","volume":"44","author":"Turanchik","year":"1979","journal-title":"Oecologia"},{"key":"10.1016\/j.pld.2025.09.004_bib106","doi-asserted-by":"crossref","first-page":"725","DOI":"10.1038\/nrg2600","article-title":"The evolutionary significance of ancient genome duplications","volume":"10","author":"Van de Peer","year":"2009","journal-title":"Nat. Rev. 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Bot."},{"key":"10.1016\/j.pld.2025.09.004_bib118","doi-asserted-by":"crossref","first-page":"128","DOI":"10.1104\/pp.004440","article-title":"An endoplasmic reticulum-bound Ca2+\/Mn2+ pump, ECA1, supports plant growth and confers tolerance to Mn2+ stress","volume":"130","author":"Wu","year":"2002","journal-title":"Plant Physiol."},{"key":"10.1016\/j.pld.2025.09.004_bib119","doi-asserted-by":"crossref","first-page":"866","DOI":"10.1016\/j.molp.2017.04.002","article-title":"The tea tree genome provides insights into tea flavor and independent evolution of caffeine biosynthesis","volume":"10","author":"Xia","year":"2017","journal-title":"Mol. Plant"},{"key":"10.1016\/j.pld.2025.09.004_bib120","doi-asserted-by":"crossref","DOI":"10.1093\/hr\/uhad255","article-title":"Populus cathayana genome and population resequencing provide insights into its evolution and adaptation","volume":"11","author":"Xiang","year":"2024","journal-title":"Hortic. 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