{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,25]],"date-time":"2025-10-25T16:34:49Z","timestamp":1761410089675,"version":"build-2065373602"},"reference-count":36,"publisher":"Elsevier BV","issue":"5","license":[{"start":{"date-parts":[[2020,11,1]],"date-time":"2020-11-01T00:00:00Z","timestamp":1604188800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2020,11,1]],"date-time":"2020-11-01T00:00:00Z","timestamp":1604188800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"funder":[{"name":"the Shenzhen Municipal Government of China","award":["JCYJ20151015162041454"],"award-info":[{"award-number":["JCYJ20151015162041454"]}]},{"name":"the Guangdong Provincial Key Laboratory of Genome Read and Write","award":["2017B030301011"],"award-info":[{"award-number":["2017B030301011"]}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Protist"],"published-print":{"date-parts":[[2020,11]]},"DOI":"10.1016\/j.protis.2020.125758","type":"journal-article","created":{"date-parts":[[2020,8,17]],"date-time":"2020-08-17T12:08:22Z","timestamp":1597666102000},"page":"125758","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":2,"title":["The Draft Genome of Coelastrum proboscideum (Sphaeropleales, Chlorophyta)"],"prefix":"10.1016","volume":"171","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-6139-191X","authenticated-orcid":false,"given":"Hongping","family":"Liang","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hongli","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yan","family":"Xu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Linzhou","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Barbara","family":"Melkonian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2277-3077","authenticated-orcid":false,"given":"Maike","family":"Lorenz","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thomas","family":"Friedl","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4742-9870","authenticated-orcid":false,"given":"Sunil Kumar","family":"Sahu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jin","family":"Yu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Huan","family":"Liu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Melkonian","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sibo","family":"Wang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.protis.2020.125758_bib0005","series-title":"Application of Microalgae in Wastewater Treatment","first-page":"467","article-title":"An Integrated Approach of Wastewater Mitigation and Biomass Production for Biodiesel Using Scenedesmus sp","author":"Arora","year":"2019"},{"key":"10.1016\/j.protis.2020.125758_bib0010","doi-asserted-by":"crossref","first-page":"W451","DOI":"10.1093\/nar\/gki487","article-title":"GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses","volume":"33","author":"Besemer","year":"2005","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.protis.2020.125758_bib0015","doi-asserted-by":"crossref","first-page":"e01449","DOI":"10.1128\/genomeA.01449-16","article-title":"Draft genome sequence of the oleaginous green alga Tetradesmus obliquus UTEX 393","volume":"5","author":"Carreres","year":"2017","journal-title":"Genome Announc"},{"key":"10.1016\/j.protis.2020.125758_bib0020","doi-asserted-by":"crossref","first-page":"4","DOI":"10.1002\/0471250953.bi0410s05","article-title":"Using repeatmasker to identify repetitive elements in genomic sequences","volume":"5","author":"Chen","year":"2004","journal-title":"Curr Protoc Bioinformatics"},{"key":"10.1016\/j.protis.2020.125758_bib0025","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1093\/gigascience\/giy013","article-title":"10KP: A phylodiverse genome sequencing plan","volume":"7","author":"Cheng","year":"2018","journal-title":"GigaScience"},{"key":"10.1016\/j.protis.2020.125758_bib0030","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1186\/s13068-018-1308-4","article-title":"Draft genome sequence and detailed characterization of biofuel production by oleaginous microalga Scenedesmus quadricauda LWG002611","volume":"11","author":"Dasgupta","year":"2018","journal-title":"Biotechnol Biofuels"},{"key":"10.1016\/j.protis.2020.125758_bib0035","doi-asserted-by":"crossref","first-page":"51","DOI":"10.1016\/S0168-1656(99)00178-9","article-title":"Carotenoid content of chlorophycean microalgae: factors determining lutein accumulation in Muriellopsis sp. (Chlorophyta)","volume":"76","author":"Del Campo","year":"2000","journal-title":"J Biotechnol"},{"key":"10.1016\/j.protis.2020.125758_bib0040","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/1471-2105-9-18","article-title":"LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons","volume":"9","author":"Ellinghaus","year":"2008","journal-title":"BMC Bioinformatics"},{"key":"10.1016\/j.protis.2020.125758_bib0045","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13059-019-1832-y","article-title":"OrthoFinder: phylogenetic orthology inference for comparative genomics","volume":"20","author":"Emms","year":"2019","journal-title":"Genome Biol"},{"key":"10.1016\/j.protis.2020.125758_bib0050","doi-asserted-by":"crossref","first-page":"579","DOI":"10.2307\/3224488","article-title":") Polymorphic forms of Coelastrum proboscideum Bohn","volume":"85","author":"Fenwick","year":"1966","journal-title":"Trans Am Microsc Soc"},{"key":"10.1016\/j.protis.2020.125758_bib0055","doi-asserted-by":"crossref","first-page":"371","DOI":"10.1002\/iroh.19200090306","article-title":"Zellvermehrung und Koloniebildung bei einigen Scenedesmaceen","volume":"9","author":"Gro\u00dfmann","year":"1920","journal-title":"Int Rev Ges Hydrobiol Hydrogr"},{"year":"2020","series-title":"AlgaeBase. World-wide electronic publication, National University of Ireland, Galway","author":"Guiry","key":"10.1016\/j.protis.2020.125758_bib0060"},{"key":"10.1016\/j.protis.2020.125758_bib0065","first-page":"31","article-title":"Beitr\u00e4ge zur Taxonomie der Gattung Coelastrum (Chlorophyta, Chlorococeales)","volume":"68","author":"Hajdu","year":"1976","journal-title":"Ann Hist-nat Mus Nat Hung"},{"key":"10.1016\/j.protis.2020.125758_bib0070","doi-asserted-by":"crossref","first-page":"e199","DOI":"10.1093\/nar\/gkq862","article-title":"MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences","volume":"38","author":"Han","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.protis.2020.125758_bib0075","doi-asserted-by":"crossref","first-page":"325","DOI":"10.2216\/09-61.1","article-title":"ITS2 sequence-structure phylogeny in the Scenedesmaceae with special reference to Coelastrum (Chlorophyta, Chlorophyceae), including the new genera Comasiella and Pectinodesmus","volume":"49","author":"Hegewald","year":"2010","journal-title":"Phycologia"},{"key":"10.1016\/j.protis.2020.125758_bib0080","doi-asserted-by":"crossref","first-page":"767","DOI":"10.1093\/bioinformatics\/btv661","article-title":"BRAKER1: unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS","volume":"32","author":"Hoff","year":"2016","journal-title":"Bioinfomatics"},{"key":"10.1016\/j.protis.2020.125758_bib0085","doi-asserted-by":"crossref","first-page":"3059","DOI":"10.1093\/nar\/gkf436","article-title":"MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform","volume":"30","author":"Katoh","year":"2002","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.protis.2020.125758_bib0090","doi-asserted-by":"crossref","first-page":"764","DOI":"10.1093\/bioinformatics\/btr011","article-title":"A fast, lock-free approach for efficient parallel counting of occurrences of k-mers","volume":"27","author":"Mar\u00e7ais","year":"2011","journal-title":"Bioinformatics"},{"key":"10.1016\/j.protis.2020.125758_bib0095","doi-asserted-by":"crossref","first-page":"519","DOI":"10.1007\/s00449-017-1887-7","article-title":"Cultivation of newly isolated microalgae Coelastrum sp. in wastewater for simultaneous CO2 fixation, lipid production and wastewater treatment","volume":"41","author":"Mousavi","year":"2018","journal-title":"Bioprocess Biosystems Eng"},{"key":"10.1016\/j.protis.2020.125758_bib0100","doi-asserted-by":"crossref","first-page":"164","DOI":"10.1016\/j.algal.2016.01.007","article-title":"Characterization and classification of highly productive microalgae strains discovered for biofuel and bioproduct generation","volume":"15","author":"Neofotis","year":"2016","journal-title":"Algal Res"},{"key":"10.1016\/j.protis.2020.125758_bib0105","doi-asserted-by":"crossref","first-page":"328","DOI":"10.3390\/md17060328","article-title":"Nutrient deprivation-associated changes in green microalga Coelastrum sp. TISTR 9501RE enhanced potent antioxidant carotenoids","volume":"17","author":"Rauytanapanit","year":"2019","journal-title":"Mar Drugs"},{"key":"10.1016\/j.protis.2020.125758_bib0110","doi-asserted-by":"crossref","first-page":"e37723","DOI":"10.4025\/actascitechnol.v41i1.37723","article-title":"Characterization of different microalgae cultivated in open ponds","volume":"41","author":"Ribeiro","year":"2019","journal-title":"Acta Scientiarum Technol"},{"key":"10.1016\/j.protis.2020.125758_bib0115","doi-asserted-by":"crossref","first-page":"205049","DOI":"10.5402\/2012\/205049","article-title":"DNA extraction protocol for plants with high levels of secondary metabolites and polysaccharides without using liquid nitrogen and phenol","volume":"2012","author":"Sahu","year":"2012","journal-title":"ISRN Mol Biol"},{"key":"10.1016\/j.protis.2020.125758_bib0120","doi-asserted-by":"crossref","first-page":"743","DOI":"10.1016\/j.rser.2017.08.042","article-title":"Microalgae to biofuels: \u2018Promising\u2019 alternative and renewable energy, review","volume":"81","author":"Shuba","year":"2018","journal-title":"Renewable Sustain Energy Rev"},{"key":"10.1016\/j.protis.2020.125758_bib0125","doi-asserted-by":"crossref","first-page":"e01529","DOI":"10.1016\/j.heliyon.2019.e01529","article-title":"Analysis of major carotenoids and fatty acid composition of freshwater microalgae","volume":"5","author":"Soares","year":"2019","journal-title":"Heliyon"},{"key":"10.1016\/j.protis.2020.125758_bib0130","doi-asserted-by":"crossref","first-page":"1312","DOI":"10.1093\/bioinformatics\/btu033","article-title":"RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies","volume":"30","author":"Stamatakis","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.protis.2020.125758_bib0135","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1093\/nar\/gkl200","article-title":"AUGUSTUS: ab initio prediction of alternative transcripts","volume":"34","author":"Stanke","year":"2006","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.protis.2020.125758_bib0140","doi-asserted-by":"crossref","first-page":"e00617","DOI":"10.1128\/genomeA.00617-17","article-title":"Draft nuclear genome, complete chloroplast genome, and complete mitochondrial genome for the biofuel\/bioproduct feedstock species Scenedesmus obliquus strain DOE0152z","volume":"5","author":"Starkenburg","year":"2017","journal-title":"Genome Announc"},{"key":"10.1016\/j.protis.2020.125758_bib0145","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.revpalbo.2017.11.001","article-title":"Towards understanding the abundance of non-pollen palynomorphs: A comparison of fossil algae, algal pigments and sedaDNA from temperate lake sediments","volume":"249","author":"Stivrins","year":"2019","journal-title":"Rev Paleobot Palynol"},{"key":"10.1016\/j.protis.2020.125758_bib0150","doi-asserted-by":"crossref","first-page":"210","DOI":"10.1016\/j.biortech.2016.12.095","article-title":"Microalgae cultivation in urban wastewater: Coelastrum cf. pseudomicroporum as a novel carotenoid source and a potential microalgae harvesting tool","volume":"228","author":"\u00dabeda","year":"2017","journal-title":"Bioresour Technol"},{"key":"10.1016\/j.protis.2020.125758_bib0155","doi-asserted-by":"crossref","first-page":"2202","DOI":"10.1093\/bioinformatics\/btx153","article-title":"GenomeScope: fast reference-free genome profiling from short reads","volume":"33","author":"Vurture","year":"2017","journal-title":"Bioinformatics"},{"key":"10.1016\/j.protis.2020.125758_bib0160","doi-asserted-by":"crossref","first-page":"125697","DOI":"10.1016\/j.protis.2019.125697","article-title":"The draft genome of the small, spineless green alga Desmodesmus costato-granulatus (Sphaeropleales, Chlorophyta)","volume":"170","author":"Wang","year":"2019","journal-title":"Protist"},{"key":"10.1016\/j.protis.2020.125758_bib0165","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1080\/23802359.2017.1357440","article-title":"Characterization of the complete mitochondrial genome of Coelastrum sp. F187","volume":"2","author":"Wang","year":"2017","journal-title":"Mitochondrial DNA Part B"},{"key":"10.1016\/j.protis.2020.125758_bib0170","doi-asserted-by":"crossref","first-page":"543","DOI":"10.1093\/molbev\/msx319","article-title":"BUSCO applications from quality assessments to gene prediction and phylogenomics","volume":"35","author":"Waterhouse","year":"2018","journal-title":"Mol Biol Evol"},{"key":"10.1016\/j.protis.2020.125758_bib0175","doi-asserted-by":"crossref","first-page":"757","DOI":"10.1101\/gr.214874.116","article-title":"Direct determination of diploid genome sequences","volume":"27","author":"Weisenfeld","year":"2017","journal-title":"Genome Res"},{"key":"10.1016\/j.protis.2020.125758_bib0180","doi-asserted-by":"crossref","first-page":"125684","DOI":"10.1016\/j.protis.2019.125684","article-title":"The draft genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) provides insight into the evolution of Scenedesmaceae","volume":"170","author":"Xu","year":"2019","journal-title":"Protist"}],"container-title":["Protist"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1434461020300638?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S1434461020300638?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,10,25]],"date-time":"2025-10-25T16:30:15Z","timestamp":1761409815000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S1434461020300638"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2020,11]]},"references-count":36,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2020,11]]}},"alternative-id":["S1434461020300638"],"URL":"https:\/\/doi.org\/10.1016\/j.protis.2020.125758","relation":{},"ISSN":["1434-4610"],"issn-type":[{"type":"print","value":"1434-4610"}],"subject":[],"published":{"date-parts":[[2020,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"The Draft Genome of Coelastrum proboscideum (Sphaeropleales, Chlorophyta)","name":"articletitle","label":"Article Title"},{"value":"Protist","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.protis.2020.125758","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2020 Elsevier GmbH. All rights reserved.","name":"copyright","label":"Copyright"}],"article-number":"125758"}}