{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,10]],"date-time":"2026-10-10T13:13:35Z","timestamp":1791638015418,"version":"4.3.4"},"reference-count":41,"publisher":"Elsevier BV","issue":"2","license":[{"start":{"date-parts":[[2024,2,1]],"date-time":"2024-02-01T00:00:00Z","timestamp":1706745600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,2,1]],"date-time":"2024-02-01T00:00:00Z","timestamp":1706745600000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,11,15]],"date-time":"2023-11-15T00:00:00Z","timestamp":1700006400000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100006533","name":"Ministerstvo Zem\u011bd\u011blstv\u00ed","doi-asserted-by":"publisher","award":["RO0523"],"award-info":[{"award-number":["RO0523"]}],"id":[{"id":"10.13039\/501100006533","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100007403","name":"N\u00e1rodn\u00ed agentura pro zem\u011bd\u011blsk\u00fd v\u00fdzkum","doi-asserted-by":"publisher","award":["QK22020066"],"award-info":[{"award-number":["QK22020066"]}],"id":[{"id":"10.13039\/501100007403","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Poultry Science"],"published-print":{"date-parts":[[2024,2]]},"DOI":"10.1016\/j.psj.2023.103302","type":"journal-article","created":{"date-parts":[[2023,11,20]],"date-time":"2023-11-20T20:07:46Z","timestamp":1700510866000},"page":"103302","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":9,"title":["Contact with adult hens affects the composition of skin and respiratory tract microbiota in newly hatched chicks"],"prefix":"10.1016","volume":"103","author":[{"given":"Marcela","family":"Faldynova","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hana","family":"Prikrylova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alena","family":"Sebkova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0551-4444","authenticated-orcid":false,"given":"Jiri","family":"Volf","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Daniela","family":"Karasova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9537-8548","authenticated-orcid":false,"given":"Magdalena","family":"Crhanova","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0826-1075","authenticated-orcid":false,"given":"Vladimir","family":"Babak","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ivan","family":"Rychlik","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.psj.2023.103302_bib0001","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0241732","article-title":"Assessment of two DNA extraction kits for profiling poultry respiratory microbiota from multiple sample types","volume":"16","author":"Abundo","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0002","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0255633","article-title":"Microbial communities of poultry house dust, excreta and litter are partially representative of microbiota of chicken caecum and ileum","volume":"16","author":"Bindari","year":"2021","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0003","doi-asserted-by":"crossref","first-page":"1354","DOI":"10.1093\/treephys\/tpad048","article-title":"Presence and activity of nitrogen-fixing bacteria in Scots pine needles in a boreal forest: a nitrogen-addition experiment","volume":"43","author":"Bizjak","year":"2023","journal-title":"Tree Physiol"},{"key":"10.1016\/j.psj.2023.103302_bib0004","doi-asserted-by":"crossref","first-page":"90","DOI":"10.1186\/s40168-018-0470-z","article-title":"Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2\u2032s q2-feature-classifier plugin","volume":"6","author":"Bokulich","year":"2018","journal-title":"Microbiome"},{"key":"10.1016\/j.psj.2023.103302_bib0005","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1038\/s41587-019-0209-9","article-title":"Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2","volume":"37","author":"Bolyen","year":"2019","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.psj.2023.103302_bib0006","doi-asserted-by":"crossref","first-page":"581","DOI":"10.1038\/nmeth.3869","article-title":"DADA2: high-resolution sample inference from Illumina amplicon data","volume":"13","author":"Callahan","year":"2016","journal-title":"Nat. Methods"},{"key":"10.1016\/j.psj.2023.103302_bib0007","doi-asserted-by":"crossref","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2023.103302_bib0008","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1016\/j.chom.2020.06.017","article-title":"The skin microbiota: balancing risk and reward","volume":"28","author":"Flowers","year":"2020","journal-title":"Cell Host Microbe"},{"key":"10.1016\/j.psj.2023.103302_bib0009","doi-asserted-by":"crossref","first-page":"419","DOI":"10.1186\/s12859-016-1284-2","article-title":"Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers","volume":"17","author":"Girardot","year":"2016","journal-title":"BMC Bioinform."},{"key":"10.1016\/j.psj.2023.103302_bib0010","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0188455","article-title":"Age-related differences in the respiratory microbiota of chickens","volume":"12","author":"Glendinning","year":"2017","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0011","doi-asserted-by":"crossref","first-page":"244","DOI":"10.1038\/nrmicro2537","article-title":"The skin microbiome","volume":"9","author":"Grice","year":"2011","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0012","doi-asserted-by":"crossref","first-page":"1282","DOI":"10.4315\/0362-028X-63.9.1282","article-title":"Use of oleic acid to reduce the population of the bacterial flora of poultry skin","volume":"63","author":"Hinton","year":"2000","journal-title":"J. Food Prot."},{"key":"10.1016\/j.psj.2023.103302_bib0013","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.00362-18","article-title":"A consistent and predictable commercial broiler chicken bacterial microbiota in antibiotic-free production displays strong correlations with performance","volume":"84","author":"Johnson","year":"2018","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0014","doi-asserted-by":"crossref","first-page":"219","DOI":"10.3390\/microorganisms10020219","article-title":"Probiotic Lactobacilli do not protect chickens against Salmonella Enteritidis infection by competitive exclusion in the intestinal tract but in feed, outside the chicken host","volume":"10","author":"Juricova","year":"2022","journal-title":"Microorganisms"},{"key":"10.1016\/j.psj.2023.103302_bib0015","doi-asserted-by":"crossref","DOI":"10.1128\/aem.01809-22","article-title":"Succession, replacement, and modification of chicken litter microbiota","volume":"88","author":"Kubasova","year":"2022","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0016","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0212446","article-title":"Contact with adult hen affects development of caecal microbiota in newly hatched chicks","volume":"14","author":"Kubasova","year":"2019","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0017","doi-asserted-by":"crossref","first-page":"1298","DOI":"10.1016\/j.scitotenv.2019.06.217","article-title":"Microbiome composition of airborne particulate matter from livestock farms and their effect on innate immune receptors and cells","volume":"688","author":"Liu","year":"2019","journal-title":"Sci. Total Environ."},{"key":"10.1016\/j.psj.2023.103302_bib0018","doi-asserted-by":"crossref","DOI":"10.1128\/aem.00271-23","article-title":"Cecal Microbiota development and physiological responses of broilers following early life microbial inoculation using different delivery methods and microbial sources","volume":"89","author":"Marcolla","year":"2023","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0019","doi-asserted-by":"crossref","first-page":"561","DOI":"10.1186\/s12864-018-4959-4","article-title":"Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures","volume":"19","author":"Medvecky","year":"2018","journal-title":"BMC Genomics"},{"key":"10.1016\/j.psj.2023.103302_bib0020","doi-asserted-by":"crossref","first-page":"854","DOI":"10.1111\/jam.14183","article-title":"Effect of storage temperature on bacterial diversity in chicken skin","volume":"126","author":"Meng","year":"2019","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0021","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.03137-18","article-title":"Farm stage, bird age, and body site dominantly affect the quantity, taxonomic composition, and dynamics of respiratory and gut microbiota of commercial layer chickens","volume":"85","author":"Ngunjiri","year":"2019","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0022","doi-asserted-by":"crossref","first-page":"e57190","DOI":"10.1371\/journal.pone.0057190","article-title":"The poultry-associated microbiome: network analysis and farm-to-fork characterizations","volume":"8","author":"Oakley","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0023","first-page":"405","article-title":"Exposure to bioaerosols in poultry houses at different stages of fattening; use of real-time PCR for airborne bacterial quantification","volume":"52","author":"Oppliger","year":"2008","journal-title":"Ann. Occup. Hyg."},{"key":"10.1016\/j.psj.2023.103302_bib0024","doi-asserted-by":"crossref","first-page":"D590","DOI":"10.1093\/nar\/gks1219","article-title":"The SILVA ribosomal RNA gene database project: improved data processing and web-based tools","volume":"41","author":"Quast","year":"2013","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.psj.2023.103302_bib0025","doi-asserted-by":"crossref","first-page":"2399","DOI":"10.1128\/AEM.02549-15","article-title":"Bacterial succession in the broiler gastrointestinal tract","volume":"82","author":"Ranjitkar","year":"2016","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0026","doi-asserted-by":"crossref","first-page":"627","DOI":"10.1080\/00071667308416073","article-title":"Prevention of the growth of Salmonella infantis in chicks by the flora of the alimentary tract of chickens","volume":"14","author":"Rantala","year":"1973","journal-title":"Br. Poult. Sci."},{"key":"10.1016\/j.psj.2023.103302_bib0027","doi-asserted-by":"crossref","first-page":"103","DOI":"10.3390\/ani10010103","article-title":"Composition and function of chicken gut microbiota","volume":"10","author":"Rychlik","year":"2020","journal-title":"Animals (Basel)"},{"key":"10.1016\/j.psj.2023.103302_bib0028","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1637\/aviandiseases-D-22-00048","article-title":"Microbiota of chickens and their environment in commercial production","volume":"67","author":"Rychlik","year":"2023","journal-title":"Avian Dis."},{"key":"10.1016\/j.psj.2023.103302_bib0029","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.00110-23","article-title":"Exploring the core bacteria and functional traits in Pecan (Carya illinoinensis) rhizosphere","volume":"11","author":"Shi","year":"2023","journal-title":"Microbiol. Spectr."},{"key":"10.1016\/j.psj.2023.103302_bib0030","doi-asserted-by":"crossref","first-page":"67","DOI":"10.1080\/03079457.2015.1004622","article-title":"Molecular analysis of the caecal and tracheal microbiome of heat-stressed broilers supplemented with prebiotic and probiotic","volume":"44","author":"Sohail","year":"2015","journal-title":"Avian Pathol."},{"key":"10.1016\/j.psj.2023.103302_bib0031","doi-asserted-by":"crossref","first-page":"e84290","DOI":"10.1371\/journal.pone.0084290","article-title":"Highly variable microbiota development in the chicken gastrointestinal tract","volume":"8","author":"Stanley","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0032","doi-asserted-by":"crossref","DOI":"10.1128\/AEM.00431-20","article-title":"Respiratory and gut microbiota in commercial turkey flocks with disparate weight gain trajectories display differential compositional dynamics","volume":"86","author":"Taylor","year":"2020","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0033","doi-asserted-by":"crossref","first-page":"2362","DOI":"10.1016\/j.psj.2020.01.011","article-title":"Microbiome and biological blood marker changes in hens at different laying stages in conventional and cage free housings","volume":"99","author":"Van Goor","year":"2020","journal-title":"Poult. Sci."},{"key":"10.1016\/j.psj.2023.103302_bib0034","doi-asserted-by":"crossref","first-page":"957","DOI":"10.3389\/fmicb.2016.00957","article-title":"Composition of gut microbiota influences resistance of newly hatched chickens to Salmonella Enteritidis infection","volume":"7","author":"Varmuzova","year":"2016","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0035","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0115142","article-title":"Succession and replacement of bacterial populations in the caecum of egg laying hens over their whole life","volume":"9","author":"Videnska","year":"2014","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2023.103302_bib0036","doi-asserted-by":"crossref","first-page":"1480","DOI":"10.3390\/microorganisms9071480","article-title":"Eggshell and feed microbiota do not represent major sources of gut anaerobes for chickens in commercial production","volume":"9","author":"Volf","year":"2021","journal-title":"Microorganisms"},{"key":"10.1016\/j.psj.2023.103302_bib0037","doi-asserted-by":"crossref","DOI":"10.1016\/j.vetimm.2020.110127","article-title":"A respiratory commensal bacterium acts as a risk factor for Mycoplasma gallisepticum infection in chickens","volume":"230","author":"Wang","year":"2020","journal-title":"Vet. Immunol. Immunopathol."},{"key":"10.1016\/j.psj.2023.103302_bib0038","doi-asserted-by":"crossref","first-page":"7015","DOI":"10.1016\/j.psj.2020.09.024","article-title":"Mild heat stress changes the microbiota diversity in the respiratory tract and the cecum of layer-type pullets","volume":"99","author":"Wang","year":"2020","journal-title":"Poult. Sci."},{"key":"10.1016\/j.psj.2023.103302_bib0039","doi-asserted-by":"crossref","first-page":"403","DOI":"10.3390\/antibiotics11030403","article-title":"Rational use of danofloxacin for treatment of Mycoplasma gallisepticum in chickens based on the clinical breakpoint and lung microbiota shift","volume":"11","author":"Wang","year":"2022","journal-title":"Antibiotics (Basel)"},{"key":"10.1016\/j.psj.2023.103302_bib0040","article-title":"Complex internal microstructure of feather follicles on chicken skin promotes the bacterial cross-contamination of carcasses during the slaughtering process","volume":"11","author":"Zhang","year":"2020","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.psj.2023.103302_bib0041","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1016\/j.psj.2020.11.026","article-title":"The alterations of tracheal microbiota and inflammation caused by different levels of ammonia exposure in broiler chickens","volume":"100","author":"Zhou","year":"2021","journal-title":"Poult. Sci."}],"container-title":["Poultry Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579123008210?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579123008210?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,6,19]],"date-time":"2024-06-19T07:41:51Z","timestamp":1718782911000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0032579123008210"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,2]]},"references-count":41,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2024,2]]}},"alternative-id":["S0032579123008210"],"URL":"https:\/\/doi.org\/10.1016\/j.psj.2023.103302","relation":{},"ISSN":["0032-5791"],"issn-type":[{"value":"0032-5791","type":"print"}],"subject":[],"published":{"date-parts":[[2024,2]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Contact with adult hens affects the composition of skin and respiratory tract microbiota in newly hatched chicks","name":"articletitle","label":"Article Title"},{"value":"Poultry Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.psj.2023.103302","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2023 The Authors. Published by Elsevier Inc. on behalf of Poultry Science Association Inc.","name":"copyright","label":"Copyright"}],"article-number":"103302"}}