{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T01:32:44Z","timestamp":1791423164912,"version":"4.3.3"},"reference-count":35,"publisher":"Elsevier BV","issue":"3","license":[{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,3,1]],"date-time":"2024-03-01T00:00:00Z","timestamp":1709251200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2023,12,2]],"date-time":"2023-12-02T00:00:00Z","timestamp":1701475200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Poultry Science"],"published-print":{"date-parts":[[2024,3]]},"DOI":"10.1016\/j.psj.2023.103356","type":"journal-article","created":{"date-parts":[[2023,12,6]],"date-time":"2023-12-06T11:27:19Z","timestamp":1701862039000},"page":"103356","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":4,"title":["Gene expression response to Salmonella Typhimurium in the cecal tonsil reveals a potential mechanism of resistance in chickens"],"prefix":"10.1016","volume":"103","author":[{"given":"Qi","family":"Zhang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0002-3209-9255","authenticated-orcid":false,"given":"Yuhong","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jin","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qiao","family":"Wang","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Fan","family":"Ying","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dawei","family":"Liu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jie","family":"Wen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guiping","family":"Zhao","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Qinghe","family":"Li","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.psj.2023.103356_bib0001","doi-asserted-by":"crossref","first-page":"1300","DOI":"10.14202\/vetworld.2015.1300-1304","article-title":"Prevalence and epidemiology of Salmonella Enterica serovar Gallinarum from poultry in some parts of Haryana, India","volume":"8","author":"Arora","year":"2015","journal-title":"Vet. World"},{"key":"10.1016\/j.psj.2023.103356_bib0002","doi-asserted-by":"crossref","first-page":"3898","DOI":"10.1038\/emboj.2010.265","article-title":"Tubby and tubby-like protein 1 are new MerTK ligands for phagocytosis","volume":"29","author":"Caberoy","year":"2010","journal-title":"EMBO J."},{"key":"10.1016\/j.psj.2023.103356_bib0003","doi-asserted-by":"crossref","first-page":"884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2023.103356_bib0004","doi-asserted-by":"crossref","first-page":"e45517","DOI":"10.15252\/embr.201745517","article-title":"Serum amyloid A promotes LPS clearance and suppresses LPS-induced inflammation and tissue injury","volume":"19","author":"Cheng","year":"2018","journal-title":"EMBO Rep."},{"key":"10.1016\/j.psj.2023.103356_bib0005","doi-asserted-by":"crossref","first-page":"290","DOI":"10.1080\/1040841X.2017.1368998","article-title":"Review of egg-related salmonellosis and reduction strategies in United States, Australia, United Kingdom and New Zealand","volume":"44","author":"Chousalkar","year":"2018","journal-title":"Crit. Rev. Microbiol."},{"key":"10.1016\/j.psj.2023.103356_bib0006","doi-asserted-by":"crossref","DOI":"10.1371\/journal.ppat.1009887","article-title":"Aconitate decarboxylase 1 participates in the control of pulmonary Brucella infection in mice","volume":"17","author":"Demars","year":"2021","journal-title":"PLoS Pathog."},{"key":"10.1016\/j.psj.2023.103356_bib0007","first-page":"979","article-title":"Transcriptomic analysis of the spleen of different chicken breeds revealed the differential resistance of typhimurium","volume":"10","author":"Elsharkawy","year":"2022","journal-title":"Genes-Basel"},{"key":"10.1016\/j.psj.2023.103356_bib0008","doi-asserted-by":"crossref","first-page":"6005","DOI":"10.3382\/ps\/pez407","article-title":"Candidate genes of the transcellular and paracellular calcium absorption pathways in the small intestine of laying hens","volume":"98","author":"Gloux","year":"2019","journal-title":"Poult. Sci."},{"key":"10.1016\/j.psj.2023.103356_bib0009","doi-asserted-by":"crossref","first-page":"182","DOI":"10.1002\/(SICI)1097-0185(199802)250:2<182::AID-AR8>3.0.CO;2-5","article-title":"Appearance and development of lymphoid cells in the chicken (Gallus gallus) caecal tonsil","volume":"250","author":"Gomez Del Moral","year":"1998","journal-title":"Anat. Rec."},{"key":"10.1016\/j.psj.2023.103356_bib0010","doi-asserted-by":"crossref","first-page":"e14733","DOI":"10.14814\/phy2.14733","article-title":"Sexually dimorphic response of mice to the Western-style diet caused by deficiency of fatty acid binding protein 6 (Fabp6)","volume":"9","author":"Habib","year":"2021","journal-title":"Physiol. Rep."},{"key":"10.1016\/j.psj.2023.103356_bib0011","doi-asserted-by":"crossref","first-page":"1252","DOI":"10.2174\/1871530322666220127114326","article-title":"Neuroendocrine modulation of food intake and eating behavior","volume":"22","author":"Iovino","year":"2022","journal-title":"Endocr. Metab. Immune Disord. Drug Targets"},{"key":"10.1016\/j.psj.2023.103356_bib0012","first-page":"163","article-title":"L-type fatty acid binding protein (L-FABP) and kidney disease","volume":"62","author":"Kamijo-Ikemori","year":"2014","journal-title":"Rinsho Byori"},{"key":"10.1016\/j.psj.2023.103356_bib0013","doi-asserted-by":"crossref","first-page":"357","DOI":"10.1038\/nmeth.3317","article-title":"HISAT: a fast spliced aligner with low memory requirements","volume":"12","author":"Kim","year":"2015","journal-title":"Nat. Methods"},{"key":"10.1016\/j.psj.2023.103356_bib0014","first-page":"481","article-title":"Enhancement of human monocyte phagocytic function by alpha 2HS glycoprotein","volume":"42","author":"Lewis","year":"1981","journal-title":"Immunology"},{"key":"10.1016\/j.psj.2023.103356_bib0015","doi-asserted-by":"crossref","first-page":"323","DOI":"10.1186\/1471-2105-12-323","article-title":"RSEM: accurate transcript quantification from RNA-seq data with or without a reference genome","volume":"12","author":"Li","year":"2011","journal-title":"BMC Bioinf."},{"key":"10.1016\/j.psj.2023.103356_bib0016","article-title":"The vertical transmission of Salmonella Enteritidis in a one-health context","volume":"16","author":"Liu","year":"2022","journal-title":"One Health-Amsterdam"},{"key":"10.1016\/j.psj.2023.103356_bib0017","doi-asserted-by":"crossref","first-page":"550","DOI":"10.1186\/s13059-014-0550-8","article-title":"Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2","volume":"15","author":"Love","year":"2014","journal-title":"Genome Biol."},{"key":"10.1016\/j.psj.2023.103356_bib0019","doi-asserted-by":"crossref","first-page":"11205","DOI":"10.1074\/jbc.M111.333559","article-title":"Alternative luminal activation mechanisms for paneth cell alpha-defensins","volume":"287","author":"Mastroianni","year":"2012","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.psj.2023.103356_bib0020","doi-asserted-by":"crossref","first-page":"193","DOI":"10.3389\/fnins.2013.00193","article-title":"Stress and eating: a dual role for bombesin-like peptides","volume":"7","author":"Merali","year":"2013","journal-title":"Front. Neurosci."},{"key":"10.1016\/j.psj.2023.103356_bib0021","doi-asserted-by":"crossref","first-page":"168","DOI":"10.1186\/s12866-023-02908-8","article-title":"Prevalence of Salmonella Typhimurium and Salmonella enteritidis isolated from poultry meat: virulence and antimicrobial-resistant genes","volume":"23","author":"Moghadam","year":"2023","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.psj.2023.103356_bib0022","doi-asserted-by":"crossref","first-page":"44","DOI":"10.1080\/03079457.2023.2268027","article-title":"A Salmonella Pullorum outbreak with neurological signs in adult layers and outbreak investigation using whole genome sequencing","volume":"53","author":"Molenaar","year":"2024","journal-title":"Avian Pathol."},{"key":"10.1016\/j.psj.2023.103356_bib0023","doi-asserted-by":"crossref","first-page":"e00024","DOI":"10.1136\/vetreco-2017-000247","article-title":"Motile Salmonella serotypes causing high mortality in poultry farms in three South-Western States of Nigeria","volume":"4","author":"Mshelbwala","year":"2017","journal-title":"Vet. Rec. Open"},{"key":"10.1016\/j.psj.2023.103356_bib0024","doi-asserted-by":"crossref","first-page":"954","DOI":"10.1107\/S2059798321005763","article-title":"Crystal structure of human brain-type fatty acid-binding protein FABP7 complexed with palmitic acid","volume":"77","author":"Nam","year":"2021","journal-title":"Acta Crystallogr. D Struct. Biol."},{"key":"10.1016\/j.psj.2023.103356_bib0025","doi-asserted-by":"crossref","DOI":"10.1172\/JCI148548","article-title":"The role of itaconate in host defense and inflammation","volume":"132","author":"Peace","year":"2022","journal-title":"J. Clin. Invest."},{"key":"10.1016\/j.psj.2023.103356_bib0026","doi-asserted-by":"crossref","first-page":"943","DOI":"10.1161\/01.RES.0000247067.34173.1b","article-title":"Constitutive endocytosis of CD163 mediates hemoglobin-heme uptake and determines the noninflammatory and protective transcriptional response of macrophages to hemoglobin","volume":"99","author":"Schaer","year":"2006","journal-title":"Circ. Res."},{"key":"10.1016\/j.psj.2023.103356_bib0027","doi-asserted-by":"crossref","first-page":"991","DOI":"10.1089\/ars.2007.1576","article-title":"Gating the radical hemoglobin to macrophages: the anti-inflammatory role of CD163, a scavenger receptor","volume":"9","author":"Schaer","year":"2007","journal-title":"Antioxid. Redox. Signal"},{"key":"10.1016\/j.psj.2023.103356_bib0028","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1089\/fpd.2019.2676","article-title":"The epidemiology of monophasic Salmonella Typhimurium","volume":"17","author":"Sun","year":"2020","journal-title":"Foodborne Pathog. Dis."},{"key":"10.1016\/j.psj.2023.103356_bib0029","doi-asserted-by":"crossref","first-page":"727","DOI":"10.1002\/ueg2.12097","article-title":"The gastrointestinal tract in hunger and satiety signalling","volume":"9","author":"Tack","year":"2021","journal-title":"United Eur. Gastroenterol. J."},{"key":"10.1016\/j.psj.2023.103356_bib0030","doi-asserted-by":"crossref","DOI":"10.3389\/fimmu.2022.816689","article-title":"Heterophil\/lymphocyte ratio level modulates Salmonella resistance, cecal microbiota composition and functional capacity in infected chicken","volume":"13","author":"Thiam","year":"2022","journal-title":"Front. Immunol."},{"key":"10.1016\/j.psj.2023.103356_bib0031","doi-asserted-by":"crossref","first-page":"5079","DOI":"10.2147\/JIR.S331939","article-title":"The beta3\/5 integrin-MMP9 axis regulates pulmonary inflammatory response and endothelial leakage in acute lung injury","volume":"14","author":"Tong","year":"2021","journal-title":"J. Inflamm. Res."},{"key":"10.1016\/j.psj.2023.103356_bib0032","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1038\/nbt.1621","article-title":"Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation","volume":"28","author":"Trapnell","year":"2010","journal-title":"Nat. Biotechnol."},{"key":"10.1016\/j.psj.2023.103356_bib0033","doi-asserted-by":"crossref","first-page":"20533","DOI":"10.1002\/jcp.28653","article-title":"Role of acute-phase protein ORM in a mice model of ischemic stroke","volume":"234","author":"Wan","year":"2019","journal-title":"J. Cell. Physiol."},{"key":"10.1016\/j.psj.2023.103356_bib0034","doi-asserted-by":"crossref","first-page":"830","DOI":"10.3390\/toxins14120830","article-title":"Dietary catalase supplementation alleviates deoxynivalenol-induced oxidative stress and gut microbiota dysbiosis in broiler chickens","volume":"14","author":"Wang","year":"2022","journal-title":"Toxins (Basel)"},{"key":"10.1016\/j.psj.2023.103356_bib0035","doi-asserted-by":"crossref","first-page":"822","DOI":"10.1038\/s41423-020-0489-5","article-title":"ACOD1 in immunometabolism and disease","volume":"17","author":"Wu","year":"2020","journal-title":"Cell. Mol. Immunol."},{"key":"10.1016\/j.psj.2023.103356_bib0036","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1177\/1753425919887236","article-title":"MMP9 protects against LPS-induced inflammation in osteoblasts","volume":"26","author":"Zhang","year":"2020","journal-title":"Innate Immun."}],"container-title":["Poultry Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579123008763?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579123008763?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,21]],"date-time":"2025-09-21T22:56:29Z","timestamp":1758495389000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0032579123008763"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,3]]},"references-count":35,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2024,3]]}},"alternative-id":["S0032579123008763"],"URL":"https:\/\/doi.org\/10.1016\/j.psj.2023.103356","relation":{},"ISSN":["0032-5791"],"issn-type":[{"value":"0032-5791","type":"print"}],"subject":[],"published":{"date-parts":[[2024,3]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Gene expression response to Salmonella Typhimurium in the cecal tonsil reveals a potential mechanism of resistance in chickens","name":"articletitle","label":"Article Title"},{"value":"Poultry Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.psj.2023.103356","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 Published by Elsevier Inc. on behalf of Poultry Science Association Inc.","name":"copyright","label":"Copyright"}],"article-number":"103356"}}