{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,6]],"date-time":"2026-06-06T08:08:33Z","timestamp":1780733313182,"version":"3.54.1"},"reference-count":20,"publisher":"Elsevier BV","issue":"6","license":[{"start":{"date-parts":[[2024,6,1]],"date-time":"2024-06-01T00:00:00Z","timestamp":1717200000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2024,6,1]],"date-time":"2024-06-01T00:00:00Z","timestamp":1717200000000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2024,3,27]],"date-time":"2024-03-27T00:00:00Z","timestamp":1711497600000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc-nd\/4.0\/"}],"funder":[{"DOI":"10.13039\/100005825","name":"National Institute of Food and Agriculture","doi-asserted-by":"publisher","award":["2020-67017-33235"],"award-info":[{"award-number":["2020-67017-33235"]}],"id":[{"id":"10.13039\/100005825","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000030","name":"Centers for Disease Control and Prevention","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000030","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100016204","name":"Minnesota Supercomputing Institute, University of Minnesota","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100016204","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100020365","name":"National Foundation for the Centers for Disease Control and Prevention Inc","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100020365","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Poultry Science"],"published-print":{"date-parts":[[2024,6]]},"DOI":"10.1016\/j.psj.2024.103707","type":"journal-article","created":{"date-parts":[[2024,3,30]],"date-time":"2024-03-30T12:08:55Z","timestamp":1711800535000},"page":"103707","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":13,"title":["Persistence of vaccine origin Salmonella Typhimurium through the poultry production continuum, and development of a rapid typing scheme for their differentiation from wild type field isolates"],"prefix":"10.1016","volume":"103","author":[{"given":"Timothy J.","family":"Johnson","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cristian","family":"Flores-Figueroa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jeannette","family":"Munoz-Aguayo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Glenda","family":"Pinho","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Elizabeth","family":"Miller","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.psj.2024.103707_bib0001","doi-asserted-by":"crossref","first-page":"435","DOI":"10.2307\/1591205","article-title":"Humoral responses and salmonellosis protection in chickens given a vitamin-dependent Salmonella typhimurium mutant","volume":"35","author":"Alderton","year":"1991","journal-title":"Avian Dis."},{"key":"10.1016\/j.psj.2024.103707_bib0002","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J. Comput. Biol."},{"key":"10.1016\/j.psj.2024.103707_bib0003","doi-asserted-by":"crossref","first-page":"2114","DOI":"10.1093\/bioinformatics\/btu170","article-title":"Trimmomatic: a flexible trimmer for Illumina sequence data","volume":"30","author":"Bolger","year":"2014","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2024.103707_bib0004","unstructured":"Collaboration, T. I. F. S. A. 2021. Foodborne illness source attribution estimates for 2019 for Salmonella, Escherichia coli O157, Listeria monocytogenes, and Campylobacter using multi-year outbreak surveillance data, United States. U.S. Department of Health and Human Services\u2019 Centers for Disease Control and Prevention and U.S. Food and Drug Administration, U.S. Department of Agriculture's Food Safety and Inspection Service., United States. Accessed March 2024. https:\/\/www.cdc.gov\/foodsafety\/ifsac\/pdf\/P19-2019-report-TriAgency-508.pdf."},{"key":"10.1016\/j.psj.2024.103707_bib0005","first-page":"427","article-title":"Vaccines to control Salmonella in poultry","volume":"67","author":"Curtiss","year":"2024","journal-title":"Avian Dis."},{"key":"10.1016\/j.psj.2024.103707_bib0006","doi-asserted-by":"crossref","first-page":"3035","DOI":"10.1128\/iai.55.12.3035-3043.1987","article-title":"Salmonella typhimurium deletion mutants lacking adenylate cyclase and cyclic AMP receptor protein are avirulent and immunogenic","volume":"55","author":"Curtiss","year":"1987","journal-title":"Infect. Immun."},{"key":"10.1016\/j.psj.2024.103707_bib0007","doi-asserted-by":"crossref","first-page":"87","DOI":"10.1586\/erv.12.138","article-title":"Salmonella vaccines in poultry: past, present and future","volume":"12","author":"Desin","year":"2013","journal-title":"Expert Rev. Vaccines"},{"key":"10.1016\/j.psj.2024.103707_bib0008","doi-asserted-by":"crossref","first-page":"7820","DOI":"10.1128\/AEM.01320-10","article-title":"Effect of Salmonella vaccination of breeder chickens on contamination of broiler chicken carcasses in integrated poultry operations","volume":"76","author":"Dorea","year":"2010","journal-title":"Appl. Environ. Microbiol."},{"key":"10.1016\/j.psj.2024.103707_bib0009","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"Gurevich","year":"2013","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2024.103707_bib0010","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1016\/0923-2508(90)90119-B","article-title":"Control of colonization by virulent Salmonella typhimurium by oral immunization of chickens with avirulent delta cya delta crp S. typhimurium","volume":"141","author":"Hassan","year":"1990","journal-title":"Res Microbiol"},{"key":"10.1016\/j.psj.2024.103707_bib0011","doi-asserted-by":"crossref","first-page":"5519","DOI":"10.1128\/iai.62.12.5519-5527.1994","article-title":"Development and evaluation of an experimental vaccination program using a live avirulent Salmonella typhimurium strain to protect immunized chickens against challenge with homologous and heterologous Salmonella serotypes","volume":"62","author":"Hassan","year":"1994","journal-title":"Infect. Immun."},{"key":"10.1016\/j.psj.2024.103707_bib0012","doi-asserted-by":"crossref","first-page":"783","DOI":"10.2307\/1592330","article-title":"Efficacy of a live avirulent Salmonella typhimurium vaccine in preventing colonization and invasion of laying hens by Salmonella typhimurium and Salmonella enteritidis","volume":"41","author":"Hassan","year":"1997","journal-title":"Avian Dis."},{"key":"10.1016\/j.psj.2024.103707_bib0013","doi-asserted-by":"crossref","first-page":"656","DOI":"10.1637\/7002","article-title":"Use of a live attenuated Salmonella typhimurium vaccine to protect hens against Salmonella enteritidis infection while undergoing molt","volume":"47","author":"Holt","year":"2003","journal-title":"Avian Dis."},{"key":"10.1016\/j.psj.2024.103707_bib0014","doi-asserted-by":"crossref","first-page":"1653","DOI":"10.4315\/0362-028X-69.7.1653","article-title":"Identification of Salmonella enterica serovar Typhimurium using specific PCR primers obtained by comparative genomics in Salmonella serovars","volume":"69","author":"Kim","year":"2006","journal-title":"J. Food Prot."},{"key":"10.1016\/j.psj.2024.103707_bib0015","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1093\/bioinformatics\/btm091","article-title":"Enhancements and modifications of primer design program Primer3","volume":"23","author":"Koressaar","year":"2007","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2024.103707_bib0016","doi-asserted-by":"crossref","first-page":"1110","DOI":"10.1128\/jb.145.2.1110-1111.1981","article-title":"Selection for loss of tetracycline resistance by Escherichia coli","volume":"145","author":"Maloy","year":"1981","journal-title":"J Bacteriol"},{"key":"10.1016\/j.psj.2024.103707_bib0017","doi-asserted-by":"crossref","first-page":"852","DOI":"10.1038\/35101614","article-title":"Complete genome sequence of Salmonella enterica serovar Typhimurium LT2","volume":"413","author":"McClelland","year":"2001","journal-title":"Nature"},{"key":"10.1016\/j.psj.2024.103707_bib0018","doi-asserted-by":"crossref","first-page":"631","DOI":"10.2307\/1592904","article-title":"Combination of competitive exclusion and immunization with an attenuated live Salmonella vaccine strain in chickens","volume":"45","author":"Methner","year":"2001","journal-title":"Avian Dis."},{"key":"10.1016\/j.psj.2024.103707_bib0019","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1080\/03079457.2017.1348598","article-title":"Evaluation of the effectiveness and safety of a genetically modified live vaccine in broilers challenged with Salmonella Heidelberg","volume":"46","author":"Muniz","year":"2017","journal-title":"Avian Pathol."},{"key":"10.1016\/j.psj.2024.103707_bib0020","doi-asserted-by":"crossref","first-page":"265","DOI":"10.2307\/1591648","article-title":"Virulence of Salmonella typhimurium mutants for White Leghorn chicks","volume":"37","author":"Porter","year":"1993","journal-title":"Avian Dis."}],"container-title":["Poultry Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579124002888?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579124002888?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T04:49:21Z","timestamp":1777438161000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0032579124002888"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2024,6]]},"references-count":20,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2024,6]]}},"alternative-id":["S0032579124002888"],"URL":"https:\/\/doi.org\/10.1016\/j.psj.2024.103707","relation":{},"ISSN":["0032-5791"],"issn-type":[{"value":"0032-5791","type":"print"}],"subject":[],"published":{"date-parts":[[2024,6]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Persistence of vaccine origin Salmonella Typhimurium through the poultry production continuum, and development of a rapid typing scheme for their differentiation from wild type field isolates","name":"articletitle","label":"Article Title"},{"value":"Poultry Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.psj.2024.103707","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2024 The Authors. Published by Elsevier Inc. on behalf of Poultry Science Association Inc.","name":"copyright","label":"Copyright"}],"article-number":"103707"}}