{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T15:04:36Z","timestamp":1789571076944,"version":"build-2803163510"},"reference-count":78,"publisher":"Elsevier BV","issue":"10","license":[{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,10,1]],"date-time":"2026-10-01T00:00:00Z","timestamp":1790812800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,6,9]],"date-time":"2026-06-09T00:00:00Z","timestamp":1780963200000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004837","name":"Ministerio de Ciencia e Innovaci\u00f3n","doi-asserted-by":"publisher","award":["RTI2018-095081-B-I00"],"award-info":[{"award-number":["RTI2018-095081-B-I00"]}],"id":[{"id":"10.13039\/501100004837","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100026132","name":"Indiana Retired Teachers Association","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100026132","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002809","name":"Generalitat de Catalunya","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100002809","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100014440","name":"Spain Ministry of Science Innovation and Universities","doi-asserted-by":"publisher","award":["PID2021-128079OB-I00"],"award-info":[{"award-number":["PID2021-128079OB-I00"]}],"id":[{"id":"10.13039\/100014440","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100014440","name":"Spain Ministry of Science Innovation and Universities","doi-asserted-by":"publisher","award":["PRE2019- 087435"],"award-info":[{"award-number":["PRE2019- 087435"]}],"id":[{"id":"10.13039\/100014440","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Poultry Science"],"published-print":{"date-parts":[[2026,10]]},"DOI":"10.1016\/j.psj.2026.107271","type":"journal-article","created":{"date-parts":[[2026,6,10]],"date-time":"2026-06-10T23:57:30Z","timestamp":1781135850000},"page":"107271","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["Phenotypic and whole genome characterization of multidrug-resistant Campylobacter coli from chicken liver"],"prefix":"10.1016","volume":"105","author":[{"given":"M\u00aa Pilar","family":"Gonz\u00e1lez-Navarro","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alicia","family":"Manzanares-Pedrosa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Florencia","family":"Correa-Fiz","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lauge Holm","family":"S\u00f8rensen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Teresa","family":"Ayats","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"N\u00faria","family":"Aloy","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Miquel","family":"Nofrar\u00edas","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2934-8214","authenticated-orcid":false,"given":"Rene S.","family":"Hendriksen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6842-1299","authenticated-orcid":false,"given":"Marta","family":"Cerd\u00e0-Cu\u00e9llar","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0001","doi-asserted-by":"crossref","first-page":"52","DOI":"10.1093\/jac\/dki419","article-title":"Interaction of CmeABC and CmeDEF in conferring antimicrobial resistance and maintaining cell viability in Campylobacter jejuni","volume":"57","author":"Akiba","year":"2006","journal-title":"J. Antimicrob. Chemother."},{"issue":"22","key":"10.1016\/j.psj.2026.107271_bib0002","doi-asserted-by":"crossref","first-page":"3380","DOI":"10.1093\/bioinformatics\/btw493","article-title":"plasmidSPAdes: assembling plasmids from whole genome sequencing data","volume":"32","author":"Antipov","year":"2016","journal-title":"Bioinformatics"},{"issue":"8","key":"10.1016\/j.psj.2026.107271_bib0003","doi-asserted-by":"crossref","first-page":"1601","DOI":"10.3390\/microorganisms12081601","article-title":"Antimicrobial resistance and genomic characterization of Campylobacter jejuni and Campylobacter coli isolated from retail chickens in Beijing, China","volume":"12","author":"Bai","year":"2024","journal-title":"Microorganisms"},{"issue":"5","key":"10.1016\/j.psj.2026.107271_bib0004","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J. Comput. Biol."},{"issue":"9","key":"10.1016\/j.psj.2026.107271_bib0005","doi-asserted-by":"crossref","first-page":"904","DOI":"10.3390\/antibiotics13090904","article-title":"A decade of antimicrobial resistance in human and animal Campylobacter spp. Isolates","volume":"13","author":"Barata","year":"2024","journal-title":"Antibiotics"},{"issue":"11","key":"10.1016\/j.psj.2026.107271_bib0006","doi-asserted-by":"crossref","DOI":"10.1128\/aac.00272-23","article-title":"Development of meropenem resistance in a multidrug-resistant Campylobacter coli strain causing recurrent bacteremia in a hematological malignancy patient","volume":"67","author":"Bonilla-Moreno","year":"2023","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.psj.2026.107271_bib0007","doi-asserted-by":"crossref","first-page":"717","DOI":"10.1089\/fpd.2022.0043","article-title":"Prevalence and antimicrobial resistance of Campylobacter spp. Isolated from broilers throughout the supply chain in Valencia, Spain","volume":"19","author":"Bort","year":"2022","journal-title":"Foodborne Pathog. Dis."},{"issue":"3","key":"10.1016\/j.psj.2026.107271_bib0008","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1089\/fpd.2017.2325","article-title":"Characterization of Campylobacter jejuni and Campylobacter coli broiler isolates by whole-genome sequencing","volume":"15","author":"Cantero","year":"2018","journal-title":"Foodborne Pathog. Dis."},{"issue":"7","key":"10.1016\/j.psj.2026.107271_bib0009","doi-asserted-by":"crossref","first-page":"3895","DOI":"10.1128\/AAC.02412-14","article-title":"In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing","volume":"58","author":"Carattoli","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"17","key":"10.1016\/j.psj.2026.107271_bib0010","doi-asserted-by":"crossref","first-page":"i884","DOI":"10.1093\/bioinformatics\/bty560","article-title":"Fastp: an ultra-fast all-in-one FASTQ preprocessor","volume":"34","author":"Chen","year":"2018","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2026.107271_bib0011","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2021.662144","article-title":"Whole resistome analysis in Campylobacter jejuni and C. coli genomes available in public repositories","volume":"12","author":"Cobo-D\u00edaz","year":"2021","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.psj.2026.107271_bib0012","series-title":"Foodborne Diseases","first-page":"209","article-title":"Campylobacter foodborne disease","author":"Connerton","year":"2017"},{"key":"10.1016\/j.psj.2026.107271_bib0013","doi-asserted-by":"crossref","first-page":"76","DOI":"10.1016\/j.trsl.2020.04.009","article-title":"New and alternative strategies for the prevention, control, and treatment of antibiotic-resistant Campylobacter","volume":"223","author":"Dai","year":"2020","journal-title":"Transl. Res."},{"issue":"51","key":"10.1016\/j.psj.2026.107271_bib0014","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2415823121","article-title":"Mutation-based mechanism and evolution of the potent multidrug efflux pump RE-CmeABC in Campylobacter","volume":"121","author":"Dai","year":"2024","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0015","doi-asserted-by":"crossref","first-page":"671","DOI":"10.1007\/s11033-019-05174-y","article-title":"Campylobacter jejuni isolated from poultry meat in Brazil: in silico analysis and genomic features of two strains with different phenotypes of antimicrobial susceptibility","volume":"47","author":"De F\u00e1tima Rauber W\u00fcrfel","year":"2020","journal-title":"Mol. Biol. Rep."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0016","doi-asserted-by":"crossref","first-page":"463","DOI":"10.1111\/tbed.13046","article-title":"Molecular epidemiology and antimicrobial resistance mechanisms of Campylobacter coli from diarrhoeal patients and broiler carcasses in Belgium","volume":"66","author":"Elhadidy","year":"2019","journal-title":"Transbound. Emerg. Dis."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0017","doi-asserted-by":"crossref","first-page":"24","DOI":"10.3201\/eid0701.010104","article-title":"Quinolone and macrolide resistance in Campylobacter jejuni and C. coli: resistance mechanisms and trends in human isolates","volume":"7","author":"Engberg","year":"2001","journal-title":"Emerg. Infect. Dis."},{"issue":"2","key":"10.1016\/j.psj.2026.107271_bib0018","article-title":"Antimicrobial consumption and resistance in bacteria from humans and food-producing animals","volume":"22","year":"2024","journal-title":"EFSA J."},{"issue":"3","key":"10.1016\/j.psj.2026.107271_bib0019","article-title":"Analysis of the baseline survey on the prevalence of Campylobacter in broiler batches and of Campylobacter and Salmonella on broiler carcasses in the EU, 2008 - part A: campylobacter and Salmonella prevalence estimates","volume":"8","year":"2010","journal-title":"EFSA J."},{"issue":"3","key":"10.1016\/j.psj.2026.107271_bib0020","article-title":"The european union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2020\/2021","volume":"21","year":"2023","journal-title":"EFSA J."},{"issue":"12","key":"10.1016\/j.psj.2026.107271_bib0021","article-title":"The European Union one Health 2024 zoonoses report","volume":"23","year":"2025","journal-title":"EFSA J."},{"issue":"3","key":"10.1016\/j.psj.2026.107271_bib0022","article-title":"The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2022\u20132023","volume":"23","year":"2025","journal-title":"EFSA J."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0023","doi-asserted-by":"crossref","DOI":"10.1038\/s41598-021-91456-0","article-title":"AMRFinderPlus and the reference gene catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence","volume":"11","author":"Feldgarden","year":"2021","journal-title":"Sci. Rep."},{"issue":"3","key":"10.1016\/j.psj.2026.107271_bib0024","doi-asserted-by":"crossref","first-page":"841","DOI":"10.1093\/jac\/dkv383","article-title":"Description of an erm (B)-carrying Campylobacter coli isolate in Europe","volume":"71","author":"Florez-Cuadrado","year":"2016","journal-title":"J. Antimicrob. Chemother."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0025","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1186\/s12866-025-04272-1","article-title":"WGS-based surveillance for Campylobacter spp. in human infections and chicken meat production in Italy (2023)","volume":"25","author":"Garc\u00eda-Fern\u00e1ndez","year":"2025","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.psj.2026.107271_bib0026","doi-asserted-by":"crossref","DOI":"10.3389\/fmicb.2023.1293666","article-title":"Antibiotic resistance, plasmids, and virulence-associated markers in human strains of Campylobacter jejuni and Campylobacter coli isolated in Italy","volume":"14","author":"Garc\u00eda-Fern\u00e1ndez","year":"2024","journal-title":"Front. Microbiol."},{"issue":"8","key":"10.1016\/j.psj.2026.107271_bib0027","doi-asserted-by":"crossref","first-page":"3357","DOI":"10.1128\/AAC.01655-08","article-title":"\u03b2-lactamase-mediated \u03b2-lactam resistance in Campylobacter species: prevalence of Cj0299 (blaOXA-61) and evidence for a novel \u03b2-lactamase in C. jejuni","volume":"53","author":"Griggs","year":"2009","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0028","doi-asserted-by":"crossref","first-page":"212","DOI":"10.1128\/AAC.01310-13","article-title":"ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes","volume":"58","author":"Gupta","year":"2014","journal-title":"Antimicrob. Agents Chemother."},{"issue":"8","key":"10.1016\/j.psj.2026.107271_bib0029","doi-asserted-by":"crossref","first-page":"1072","DOI":"10.1093\/bioinformatics\/btt086","article-title":"QUAST: quality assessment tool for genome assemblies","volume":"29","author":"Gurevich","year":"2013","journal-title":"Bioinformatics"},{"issue":"12","key":"10.1016\/j.psj.2026.107271_bib0030","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pmed.1001923","article-title":"World health organization global estimates and regional comparisons of the burden of foodborne disease in 2010","volume":"12","author":"Havelaar","year":"2015","journal-title":"PLOS Med."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0031","doi-asserted-by":"crossref","first-page":"206","DOI":"10.3390\/microorganisms13010206","article-title":"Comparative genomic analysis of Campylobacter plasmids identified in food isolates","volume":"13","author":"He","year":"2025","journal-title":"Microorganisms"},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0032","doi-asserted-by":"crossref","first-page":"294","DOI":"10.1186\/s13059-015-0849-0","article-title":"Circlator: automated circularization of genome assemblies using long sequencing reads","volume":"16","author":"Hunt","year":"2015","journal-title":"Genome Biol."},{"issue":"2","key":"10.1016\/j.psj.2026.107271_bib0033","doi-asserted-by":"crossref","DOI":"10.1128\/aac.01668-24","article-title":"Increasing rates of erm(B) and erm(N) in human Campylobacter coli and Campylobacter jejuni erythromycin-resistant isolates between 2018 and 2023 in France","volume":"69","author":"Jehanne","year":"2025","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.psj.2026.107271_bib0034","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01124-21","article-title":"Emergence of erythromycin resistance methyltransferases in Campylobacter coli strains in France","volume":"65","author":"Jehanne","year":"2021","journal-title":"Antimicrob. Agents Chemother."},{"key":"10.1016\/j.psj.2026.107271_bib0035","doi-asserted-by":"crossref","first-page":"124","DOI":"10.12688\/wellcomeopenres.14826.1","article-title":"Open-access bacterial population genomics: BIGSdb software, the PubMLST.Org website and their applications","volume":"3","author":"Jolley","year":"2018","journal-title":"Wellcome Open Res."},{"issue":"7","key":"10.1016\/j.psj.2026.107271_bib0036","doi-asserted-by":"crossref","first-page":"1208","DOI":"10.3201\/eid2207.151775","article-title":"Restaurant cooking trends and increased risk for Campylobacter infection","volume":"22","author":"Jones","year":"2016","journal-title":"Emerg. Infect. Dis."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0037","doi-asserted-by":"crossref","first-page":"2733","DOI":"10.1038\/s41598-018-35820-7","article-title":"Retail liver juices enhance the survivability of Campylobacter jejuni and Campylobacter coli at low temperatures","volume":"9","author":"Karki","year":"2019","journal-title":"Sci. Rep."},{"issue":"12","key":"10.1016\/j.psj.2026.107271_bib0038","doi-asserted-by":"crossref","first-page":"5549","DOI":"10.1128\/JCM.42.12.5549-5557.2004","article-title":"Differentiation of Campylobacter coli, Campylobacter jejuni, Campylobacter lari, and Campylobacter upsaliensis by a multiplex PCR developed from the nucleotide sequence of the lipid a gene lpxA","volume":"42","author":"Klena","year":"2004","journal-title":"J. Clin. Microbiol."},{"issue":"D1","key":"10.1016\/j.psj.2026.107271_bib0039","doi-asserted-by":"crossref","first-page":"D574","DOI":"10.1093\/nar\/gkw1009","article-title":"MEGARes: an antimicrobial resistance database for high throughput sequencing","volume":"45","author":"Lakin","year":"2017","journal-title":"Nucleic Acids Res."},{"issue":"3","key":"10.1016\/j.psj.2026.107271_bib0041","doi-asserted-by":"crossref","first-page":"541","DOI":"10.1073\/pnas.0408966102","article-title":"Enhanced in vivo fitness of fluoroquinolone-resistant Campylobacter jejuni in the absence of antibiotic selection pressure","volume":"102","author":"Luo","year":"2005","journal-title":"Proc. Natl. Acad. Sci."},{"issue":"8","key":"10.1016\/j.psj.2026.107271_bib0042","doi-asserted-by":"crossref","DOI":"10.1016\/j.psj.2025.105302","article-title":"Phenotypic and whole genome-based characterization of antibiotic resistance of Campylobacter jejuni isolates from chicken livers","volume":"104","author":"Manzanares-Pedrosa","year":"2025","journal-title":"Poult. Sci."},{"issue":"11","key":"10.1016\/j.psj.2026.107271_bib0043","doi-asserted-by":"crossref","DOI":"10.1016\/j.psj.2025.105646","article-title":"Campylobacter jejuni and Campylobacter coli in broiler chicken livers: high prevalence and surface contamination, but low load in inner tissue","volume":"104","author":"Manzanares-Pedrosa","year":"2025","journal-title":"Poult. Sci."},{"issue":"10","key":"10.1016\/j.psj.2026.107271_bib0044","doi-asserted-by":"crossref","first-page":"5096","DOI":"10.1016\/j.psj.2020.06.043","article-title":"Genotyping and molecular characterization of antimicrobial resistance in thermophilic Campylobacter isolated from poultry breeders and their progeny in Eastern Spain","volume":"99","author":"Marin","year":"2020","journal-title":"Poult. Sci."},{"issue":"10","key":"10.1016\/j.psj.2026.107271_bib0045","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0223804","article-title":"Antimicrobial resistance genotypes and phenotypes of Campylobacter jejuni isolated in Italy from humans, birds from wild and urban habitats, and poultry","volume":"14","author":"Marotta","year":"2019","journal-title":"PLoS. One"},{"issue":"11","key":"10.1016\/j.psj.2026.107271_bib0046","doi-asserted-by":"crossref","first-page":"1478","DOI":"10.1016\/j.cmi.2024.06.027","article-title":"Occurrence of in vivo carbapenem-resistant Campylobacter coli mediated by porA point mutation and overexpression of blaOXA-489 under meropenem treatment","volume":"30","author":"Maurille","year":"2024","journal-title":"Clin. Microbiol. Infect."},{"issue":"7","key":"10.1016\/j.psj.2026.107271_bib0047","doi-asserted-by":"crossref","first-page":"3348","DOI":"10.1128\/AAC.00419-13","article-title":"The comprehensive antibiotic resistance database","volume":"57","author":"McArthur","year":"2013","journal-title":"Antimicrob. Agents Chemother."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0048","doi-asserted-by":"crossref","first-page":"124","DOI":"10.1016\/j.fm.2012.04.020","article-title":"Tracing Campylobacter jejuni strains along the poultry meat production chain from farm to retail by pulsed-field gel electrophoresis, and the antimicrobial resistance of isolates","volume":"32","author":"Melero","year":"2012","journal-title":"Food Microbiol."},{"issue":"7","key":"10.1016\/j.psj.2026.107271_bib0049","doi-asserted-by":"crossref","first-page":"1955","DOI":"10.1016\/j.micinf.2005.12.030","article-title":"The epidemiology of antibiotic resistance in Campylobacter","volume":"8","author":"Moore","year":"2006","journal-title":"Microbes Infect."},{"issue":"4","key":"10.1016\/j.psj.2026.107271_bib0050","doi-asserted-by":"crossref","first-page":"1368","DOI":"10.1111\/jam.14842","article-title":"Prevalence, molecular typing and antimicrobial susceptibility of Campylobacter spp. Isolates in northern Spain","volume":"130","author":"Nafarrate","year":"2021","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.psj.2026.107271_bib0051","unstructured":"National Plan against Antibiotic Resistance (PRAN). (2019). Spain reduces antibiotic consumption by 72% in human health and veterinary antibiotic sales by 32.4%. https:\/\/www.resistenciaantibioticos.es\/es\/noticias\/espana-reduce-un-72-el-consumo-de-antibioticos-en-salud-humana-y-un-324-las-ventas-de?utm."},{"issue":"7","key":"10.1016\/j.psj.2026.107271_bib0052","doi-asserted-by":"crossref","first-page":"617","DOI":"10.1089\/fpd.2011.1074","article-title":"Incidence and antimicrobial resistance profiling of Campylobacter in retail chicken livers and gizzards","volume":"9","author":"Noormohamed","year":"2012","journal-title":"Foodborne Pathog. Dis."},{"issue":"4","key":"10.1016\/j.psj.2026.107271_bib0053","doi-asserted-by":"crossref","DOI":"10.1128\/spectrum.01070-23","article-title":"Recurrent Campylobacter jejuni infections with in vivo selection of resistance to macrolides and carbapenems: molecular characterization of resistance determinants","volume":"11","author":"Nunes","year":"2023","journal-title":"Microbiol. Spectr."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0054","doi-asserted-by":"crossref","first-page":"8998","DOI":"10.1038\/s41598-021-88318-0","article-title":"Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants","volume":"11","author":"Ocejo","year":"2021","journal-title":"Sci. Rep."},{"key":"10.1016\/j.psj.2026.107271_bib0055","article-title":"Detection of carbapenem resistance genes in Campylobacter coli and Campylobacter jejuni isolated from chickens, and diarrheic children aged less than five years in Kampala city, Uganda","author":"Okello","year":"2023","journal-title":"Infect. Dis."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0056","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1186\/s12859-023-05414-w","article-title":"CamPype: an open-source workflow for automated bacterial whole-genome sequencing analysis focused on Campylobacter","volume":"24","author":"Ortega-Sanz","year":"2023","journal-title":"BMC Bioinform."},{"issue":"2","key":"10.1016\/j.psj.2026.107271_bib0057","doi-asserted-by":"crossref","first-page":"176","DOI":"10.1080\/03079457.2014.898245","article-title":"Molecular mechanisms of quinolone, macrolide, and tetracycline resistance among Campylobacter isolates from initial stages of broiler production","volume":"43","author":"P\u00e9rez-Boto","year":"2014","journal-title":"Avian Pathol."},{"key":"10.1016\/j.psj.2026.107271_bib0058","doi-asserted-by":"crossref","DOI":"10.1016\/j.ijfoodmicro.2024.111029","article-title":"Prevalence and molecular characterization of Campylobacter spp. Isolated from chicken, beef, pork and sheep livers at Irish abattoirs","volume":"430","author":"Prendergast","year":"2025","journal-title":"Int. J. Food Microbiol."},{"issue":"10","key":"10.1016\/j.psj.2026.107271_bib0059","doi-asserted-by":"crossref","first-page":"5332","DOI":"10.1128\/AAC.00809-12","article-title":"Identification of a novel genomic island conferring resistance to multiple aminoglycoside antibiotics in Campylobacter coli","volume":"56","author":"Qin","year":"2012","journal-title":"Antimicrob. Agents Chemother."},{"issue":"4","key":"10.1016\/j.psj.2026.107271_bib0060","doi-asserted-by":"crossref","first-page":"964","DOI":"10.1093\/jac\/dkt492","article-title":"Report of ribosomal RNA methylase gene erm(B) in multidrug-resistant Campylobacter coli","volume":"69","author":"Qin","year":"2014","journal-title":"J. Antimicrob. Chemother."},{"issue":"2","key":"10.1016\/j.psj.2026.107271_bib0061","doi-asserted-by":"crossref","DOI":"10.1128\/microbiolspec.ARBA-0013-2017","article-title":"Antimicrobial resistance in Campylobacter spp","volume":"6","author":"Shen","year":"2018","journal-title":"Microbiol. Spectr."},{"issue":"8","key":"10.1016\/j.psj.2026.107271_bib0062","doi-asserted-by":"crossref","first-page":"1174","DOI":"10.1089\/mdr.2017.0310","article-title":"Antimicrobial resistance of thermotolerant Campylobacter species isolated from humans, food-producing animals, and products of animal origin: a worldwide meta-analysis","volume":"24","author":"Signorini","year":"2018","journal-title":"Microb. Drug Resist."},{"key":"10.1016\/j.psj.2026.107271_bib0063","first-page":"6","article-title":"The prevalence and antimicrobial resistance of Campylobacter jejuni and Campylobacter coli in chicken livers used for human consumption in Ecuador","volume":"14","author":"Simaluiza","year":"2015","journal-title":"J. Anim. Vet. Adv."},{"key":"10.1016\/j.psj.2026.107271_bib0064","first-page":"16","article-title":"Analysis of farm specific risk factors for Campylobacter colonization of broilers in six European countries","volume":"2-3","author":"Sommer","year":"2016","journal-title":"Microb. Risk Anal."},{"issue":"8","key":"10.1016\/j.psj.2026.107271_bib0065","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0221429","article-title":"Antimicrobial resistance in Campylobacter jejuni and Campylobacter coli isolated from small poultry flocks in Ontario, Canada: a two-year surveillance study","volume":"14","author":"Varga","year":"2019","journal-title":"PLoS One"},{"issue":"12","key":"10.1016\/j.psj.2026.107271_bib0066","doi-asserted-by":"crossref","first-page":"3333","DOI":"10.1093\/jac\/dkw304","article-title":"Mosaic tetracycline resistance genes encoding ribosomal protection proteins","volume":"71","author":"Warburton","year":"2016","journal-title":"J. Antimicrob. Chemother."},{"key":"10.1016\/j.psj.2026.107271_bib0067","doi-asserted-by":"crossref","first-page":"122","DOI":"10.1016\/j.fm.2018.01.018","article-title":"Use of whole-genome sequencing for Campylobacter surveillance from NARMS retail poultry in the United States in 2015","volume":"73","author":"Whitehouse","year":"2018","journal-title":"Food Microbiol."},{"issue":"6","key":"10.1016\/j.psj.2026.107271_bib0068","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pcbi.1005595","article-title":"Unicycler: resolving bacterial genome assemblies from short and long sequencing reads","volume":"13","author":"Wick","year":"2017","journal-title":"PLOS Comput. Biol."},{"key":"10.1016\/j.psj.2026.107271_bib0069","first-page":"1","article-title":"Antimicrobial resistance mechanisms among Campylobacter","volume":"2013","author":"Wieczorek","year":"2013","journal-title":"BioMed Res. Int."},{"key":"10.1016\/j.psj.2026.107271_bib0070","doi-asserted-by":"crossref","first-page":"1508","DOI":"10.3389\/fmicb.2018.01508","article-title":"Antimicrobial resistance and virulence-associated traits of Campylobacter jejuni isolated from poultry food chain and humans with diarrhea","volume":"9","author":"Wieczorek","year":"2018","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.psj.2026.107271_bib0071","unstructured":"World Health Organization (WHO). (2019). WHO List of medically important antimicrobials. https:\/\/Doi.org\/ISBN\/2520978-92-4-008461-2."},{"key":"10.1016\/j.psj.2026.107271_bib0072","unstructured":"World Health Organization. (2024). WHO LIST OF MEDICALLY IMPORTANT ANTIMICROBIAls. https:\/\/cdn.who.int\/media\/docs\/default-source\/gcp\/who-mia-list-2024-lv.pdf."},{"key":"10.1016\/j.psj.2026.107271_bib0073","article-title":"Genomic analysis and antimicrobial resistance in human- and poultry-derived Campylobacter jejuni isolates from Hangzhou, China","volume":"16","author":"Yang","year":"2025","journal-title":"Front. Microbiol."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0074","doi-asserted-by":"crossref","DOI":"10.1128\/AAC.01622-20","article-title":"Emergence of a novel tet(L) variant in Campylobacter spp. Of chicken origin in China","volume":"65","author":"Yao","year":"2020","journal-title":"Antimicrob. Agents Chemother."},{"issue":"11","key":"10.1016\/j.psj.2026.107271_bib0075","doi-asserted-by":"crossref","first-page":"2640","DOI":"10.1093\/jac\/dks261","article-title":"Identification of acquired antimicrobial resistance genes","volume":"67","author":"Zankari","year":"2012","journal-title":"J. Antimicrob. Chemother."},{"issue":"1","key":"10.1016\/j.psj.2026.107271_bib0076","doi-asserted-by":"crossref","first-page":"156","DOI":"10.1186\/s12864-024-10014-w","article-title":"Identification of knowledge gaps in whole-genome sequence analysis of multi-resistant thermotolerant Campylobacter spp","volume":"25","author":"Zarske","year":"2024","journal-title":"BMC Genom."},{"issue":"6","key":"10.1016\/j.psj.2026.107271_bib0077","doi-asserted-by":"crossref","DOI":"10.1128\/mbio.02835-22","article-title":"Genomic insights into the increased occurrence of campylobacteriosis caused by antimicrobial-resistant Campylobacter coli","volume":"13","author":"Zhang","year":"2022","journal-title":"mBio"},{"key":"10.1016\/j.psj.2026.107271_bib0078","article-title":"Aminoglycoside resistance and possible mechanisms in Campylobacter spp. Isolated from chicken and swine in Jiangsu, China","volume":"12","author":"Zhang","year":"2021","journal-title":"Front. Microbiol."},{"issue":"12","key":"10.1016\/j.psj.2026.107271_bib0079","doi-asserted-by":"crossref","first-page":"2459","DOI":"10.1007\/s10096-024-04937-1","article-title":"Carbapenem resistant Campylobacter jejuni bacteremia in a Bruton\u2019s X-linked agammaglobulinemia patient","volume":"43","author":"Zhuo","year":"2024","journal-title":"Eur. J. Clin. Microbiol. Infect. Dis."}],"container-title":["Poultry Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579126009028?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579126009028?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,9,16]],"date-time":"2026-09-16T14:30:05Z","timestamp":1789569005000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0032579126009028"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,10]]},"references-count":78,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2026,10]]}},"alternative-id":["S0032579126009028"],"URL":"https:\/\/doi.org\/10.1016\/j.psj.2026.107271","relation":{},"ISSN":["0032-5791"],"issn-type":[{"value":"0032-5791","type":"print"}],"subject":[],"published":{"date-parts":[[2026,10]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Phenotypic and whole genome characterization of multidrug-resistant Campylobacter coli from chicken liver","name":"articletitle","label":"Article Title"},{"value":"Poultry Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.psj.2026.107271","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Authors. Published by Elsevier Inc. on behalf of Poultry Science Association Inc.","name":"copyright","label":"Copyright"}],"article-number":"107271"}}