{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,27]],"date-time":"2026-10-27T20:33:33Z","timestamp":1793133213598,"version":"4.5.0"},"reference-count":52,"publisher":"Elsevier BV","issue":"11","license":[{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2026,11,1]],"date-time":"2026-11-01T00:00:00Z","timestamp":1793491200000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"},{"start":{"date-parts":[[2026,7,16]],"date-time":"2026-07-16T00:00:00Z","timestamp":1784160000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100017170","name":"Thailand Research Fund","doi-asserted-by":"publisher","award":["PHD\/0144\/2559"],"award-info":[{"award-number":["PHD\/0144\/2559"]}],"id":[{"id":"10.13039\/501100017170","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100017170","name":"Thailand Research Fund","doi-asserted-by":"publisher","award":["RUG6020002"],"award-info":[{"award-number":["RUG6020002"]}],"id":[{"id":"10.13039\/501100017170","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004352","name":"Suranaree University of Technology","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004352","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100012309","name":"Royal Golden Jubilee (RGJ) Ph.D. Programme","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100012309","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004396","name":"Thailand Research Fund","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100004396","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Poultry Science"],"published-print":{"date-parts":[[2026,11]]},"DOI":"10.1016\/j.psj.2026.107456","type":"journal-article","created":{"date-parts":[[2026,7,17]],"date-time":"2026-07-17T15:19:35Z","timestamp":1784301575000},"page":"107456","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":0,"title":["Breed classification of Lao People's Democratic Republic (Lao PDR) and Thai native chickens using synchrotron radiation-based Fourier transform infrared spectroscopy and genotyping by sequencing"],"prefix":"10.1016","volume":"105","author":[{"given":"Phannika","family":"Khoutsavang","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8166-6207","authenticated-orcid":false,"given":"Rujjira","family":"Bunnom","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-8480-7439","authenticated-orcid":false,"given":"Saknarin","family":"Pengsanthia","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-0484-2666","authenticated-orcid":false,"given":"Pornchanok","family":"Phanhiran","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6143-4430","authenticated-orcid":false,"given":"Satoshi","family":"Kubota","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Douangta","family":"Douangvilay","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thongnoun","family":"Phonxaiya","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Viengsavanh","family":"Phimphachanhvongsod","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-2346-2980","authenticated-orcid":false,"given":"Wittawat","family":"Molee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kanjana","family":"Thumanu","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3948-7779","authenticated-orcid":false,"given":"Amonrat","family":"Molee","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.psj.2026.107456_bib0001","doi-asserted-by":"crossref","first-page":"1771","DOI":"10.1038\/nprot.2014.110","article-title":"Using fourier transform IR spectroscopy to analyze biological materials","volume":"9","author":"Baker","year":"2014","journal-title":"Nat. Protoc."},{"key":"10.1016\/j.psj.2026.107456_bib0002","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1016\/S0301-4622(03)00035-8","article-title":"A library of IR bands of nucleic acids in solution","volume":"104","author":"Banyay","year":"2003","journal-title":"Biophys. Chem."},{"key":"10.1016\/j.psj.2026.107456_bib0003","unstructured":"Bouahom, B., Keonouchanh S., and S. Khamphavong. 2007. Indigenous chickens: an important part of rural livelihoods in the Lao People's Democratic Republic. People and Animals, Traditional Livestock Keepers: Guardians of Domestic Animal Diversity. 71\u201377."},{"key":"10.1016\/j.psj.2026.107456_bib0004","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0062137","article-title":"Genotyping-by-sequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing","volume":"8","author":"De Donato","year":"2013","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2026.107456_bib0005","first-page":"1876","article-title":"Breed characterization of native chickens based on their head shape and size","volume":"16","author":"De Jesus Almeida","year":"2023","journal-title":"DELOS Desarro. Local Sosten."},{"key":"10.1016\/j.psj.2026.107456_bib0006","doi-asserted-by":"crossref","first-page":"233","DOI":"10.1016\/S0039-9140(00)00462-8","article-title":"FTIR spectroscopy studies of nucleic acid damage","volume":"53","author":"Dovbeshko","year":"2000","journal-title":"Talanta"},{"key":"10.1016\/j.psj.2026.107456_bib0007","doi-asserted-by":"crossref","first-page":"964","DOI":"10.3390\/biom13060964","article-title":"Assessing BZ DNA transitions in solutions via infrared spectroscopy","volume":"13","author":"Duan","year":"2023","journal-title":"Biomolecules"},{"key":"10.1016\/j.psj.2026.107456_bib0008","doi-asserted-by":"crossref","first-page":"183","DOI":"10.1016\/j.idairyj.2006.02.013","article-title":"Identification of lactic acid bacteria using FTIR spectroscopy and cluster analysis","volume":"17","author":"Dziuba","year":"2007","journal-title":"Int. Dairy J."},{"key":"10.1016\/j.psj.2026.107456_bib0009","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0019379","article-title":"A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species","volume":"6","author":"Elshire","year":"2011","journal-title":"PLoS One"},{"key":"10.1016\/j.psj.2026.107456_bib0010","series-title":"The State of the World\u2019s Biodiversity for Food and Agriculture","first-page":"572","year":"2019"},{"key":"10.1016\/j.psj.2026.107456_bib0011","doi-asserted-by":"crossref","first-page":"511","DOI":"10.1021\/bm1013102","article-title":"Bundling and aggregation of DNA by cationic dendrimers","volume":"12","author":"Froehlich","year":"2011","journal-title":"Biomacromolecules"},{"key":"10.1016\/j.psj.2026.107456_bib0012","doi-asserted-by":"crossref","first-page":"274","DOI":"10.1186\/1471-2164-12-274","article-title":"The development and characterization of a 60K SNP chip for chicken","volume":"12","author":"Groenen","year":"2011","journal-title":"BMC Genom."},{"key":"10.1016\/j.psj.2026.107456_bib0013","first-page":"1025","article-title":"Review on Ethiopian poultry origin, domestication, classification and characterization of its production systems","volume":"22","author":"Getu","year":"2014","journal-title":"Middle-East J. Sci. Res."},{"issue":"14","key":"10.1016\/j.psj.2026.107456_bib0014","article-title":"Blending the physical and virtual: a hybrid model for the future of work","author":"Grzegorczyk","year":"2021","journal-title":"Bruegel Polic. Contrib."},{"key":"10.1016\/j.psj.2026.107456_bib0015","doi-asserted-by":"crossref","first-page":"186","DOI":"10.1016\/j.ygeno.2018.02.002","article-title":"Genotyping-by-sequencing performance in selected livestock species","volume":"111","author":"Gurgul","year":"2019","journal-title":"Genomics"},{"key":"10.1016\/j.psj.2026.107456_bib0016","doi-asserted-by":"crossref","first-page":"57","DOI":"10.1079\/WPS200449","article-title":"Research and investment in poultry genetic resources challenges and options for sustainable use","volume":"61","author":"Hoffmann","year":"2005","journal-title":"Worlds Poult. Sci. J."},{"key":"10.1016\/j.psj.2026.107456_bib0017","doi-asserted-by":"crossref","DOI":"10.1038\/srep26484","article-title":"Whole genome sequencing of Gyeongbuk Araucana, a newly developed blue-egg laying chicken breed, reveals its origin and genetic characteristics","volume":"6","author":"Jeong","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.psj.2026.107456_bib0045","article-title":"Corrigendum: Applications of Fourier transform-infrared spectroscopy in microbial cell biology and environmental microbiology: advances, challenges, and future perspectives","volume":"14:","author":"Kassem","year":"2023","journal-title":"Front. Microbiol."},{"key":"10.1016\/j.psj.2026.107456_bib0018","first-page":"672","article-title":"Applications of Fourier transform infrared spectroscopic imaging to biomedical samples","volume":"35","author":"Kazarian","year":"2006","journal-title":"Chem. Soc. Rev."},{"key":"10.1016\/j.psj.2026.107456_bib0019","volume":"56","author":"Khamhoung","year":"2016"},{"key":"10.1016\/j.psj.2026.107456_bib0020","doi-asserted-by":"crossref","first-page":"505","DOI":"10.1017\/S0043933915002202","article-title":"Linkage disequilibrium in the estimation of genetic and demographic parameters of extensively raised chicken populations","volume":"71","author":"Khanyile","year":"2015","journal-title":"World's Poult. Sci."},{"key":"10.1016\/j.psj.2026.107456_bib0021","doi-asserted-by":"crossref","first-page":"14","DOI":"10.1016\/j.plantsci.2015.04.016","article-title":"Application of genotyping by sequencing technology to a variety of crop breeding programs","volume":"242","author":"Kim","year":"2016","journal-title":"Plant Sci."},{"key":"10.1016\/j.psj.2026.107456_bib0022","first-page":"6","article-title":"Indigenous chicken production systems in villages in the south of Tunisia","volume":"25","author":"Larbi","year":"2013","journal-title":"Livest. Res. for Rural Dev."},{"key":"10.1016\/j.psj.2026.107456_bib0023","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1007\/s11160-017-9473-2","article-title":"Advances of genotyping-by-sequencing in fisheries and aquaculture","volume":"27","author":"Li","year":"2017","journal-title":"Rev. Fish. Biol. Fish."},{"key":"10.1016\/j.psj.2026.107456_bib0024","doi-asserted-by":"crossref","first-page":"385","DOI":"10.1111\/age.13091","article-title":"Domestic chicken diversity: origin, distribution, and adaptation","volume":"52","author":"Lawal","year":"2021","journal-title":"Anim. Genet."},{"key":"10.1016\/j.psj.2026.107456_bib0025","doi-asserted-by":"crossref","first-page":"864","DOI":"10.1111\/jam.14171","article-title":"Rapid tool for identification of bacterial strains using Fourier transform infrared spectroscopy on genomic DNA","volume":"126","author":"Lee","year":"2019","journal-title":"J. Appl. Microbiol."},{"key":"10.1016\/j.psj.2026.107456_bib0026","doi-asserted-by":"crossref","first-page":"1754","DOI":"10.1093\/bioinformatics\/btp324","article-title":"Fast and accurate short read alignment with Burrows-Wheeler transform","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.psj.2026.107456_bib0027","doi-asserted-by":"crossref","first-page":"5197","DOI":"10.1093\/nar\/gkp543","article-title":"Structural characterization of cationic lipid\u2013tRNA complexes","volume":"37","author":"Marty","year":"2009","journal-title":"Nucleic. Acids Res."},{"key":"10.1016\/j.psj.2026.107456_bib0028","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/1471-2156-15-40","article-title":"Population structure of four Thai indigenous chicken breeds","volume":"15","author":"Mekchay","year":"2014","journal-title":"BMC Genet."},{"key":"10.1016\/j.psj.2026.107456_bib0029","doi-asserted-by":"crossref","first-page":"846","DOI":"10.1016\/j.bbamem.2006.04.010","article-title":"Chemical imaging of biological tissue with synchrotron infrared light","volume":"1758","author":"Miller","year":"2006","journal-title":"Biochim. Biophys. Acta (BBA)-Biomembr."},{"key":"10.1016\/j.psj.2026.107456_bib0030","doi-asserted-by":"crossref","first-page":"17312","DOI":"10.1073\/pnas.0806569105","article-title":"Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds","volume":"105","author":"Muir","year":"2008","journal-title":"Proc. Natl. Acad. Sci. U.S.A."},{"key":"10.1016\/j.psj.2026.107456_bib0031","doi-asserted-by":"crossref","first-page":"134","DOI":"10.1080\/05704920701829043","article-title":"Fourier transform infrared (FTIR) spectroscopy of biological tissues","volume":"43","author":"Movasaghi","year":"2008","journal-title":"Appl. Spectrosc. Rev."},{"key":"10.1016\/j.psj.2026.107456_bib0032","first-page":"102","article-title":"Infrared spectroscopy in microbiology","author":"Naumann","year":"2000","journal-title":"Encycl. Anal. Chem."},{"key":"10.1016\/j.psj.2026.107456_bib0033","doi-asserted-by":"crossref","first-page":"2780","DOI":"10.1038\/s41598-022-06746-y","article-title":"FTIR differentiation based on genomic DNA for species identification of Shigella isolates from stool samples","volume":"12","author":"Pakbin","year":"2022","journal-title":"Sci. Rep."},{"key":"10.1016\/j.psj.2026.107456_bib0034","doi-asserted-by":"crossref","first-page":"82","DOI":"10.3389\/fgene.2018.00082","article-title":"Accuracy of genomic evaluations of juvenile growth rate in common carp (Cyprinus carpio) using genotyping by sequencing","volume":"9","author":"Palaiokostas","year":"2018","journal-title":"Front. Genet."},{"key":"10.1016\/j.psj.2026.107456_bib0035","doi-asserted-by":"crossref","DOI":"10.1038\/srep26929","article-title":"High-throughput and cost-effective chicken genotyping using next-generation sequencing","volume":"6","author":"P\u00e9rtille","year":"2016","journal-title":"Sci. Rep."},{"key":"10.1016\/j.psj.2026.107456_bib0036","first-page":"726","article-title":"Screening rice blast-resistant cultivars via synchrotron fourier transform infrared (SR-FTIR) microspectroscopy","volume":"33","author":"Phansak","year":"2021","journal-title":"Emir. J. Food Agric."},{"key":"10.1016\/j.psj.2026.107456_bib0037","series-title":"Plant Genotyping: Methods and Protocols","first-page":"1","article-title":"Genotyping by sequencing (GBS) for genome-wide SNP identification in plants","author":"Pootakham","year":"2023"},{"key":"10.1016\/j.psj.2026.107456_bib0038","series-title":"Lao People\u2019s Democratic Republic","year":"2003"},{"key":"10.1016\/j.psj.2026.107456_bib0039","doi-asserted-by":"crossref","first-page":"587","DOI":"10.1038\/nature08832","article-title":"Whole-genome resequencing reveals loci under selection during chicken domestication","volume":"464","author":"Rubin","year":"2010","journal-title":"Nature"},{"key":"10.1016\/j.psj.2026.107456_bib0040","doi-asserted-by":"crossref","first-page":"8456","DOI":"10.1093\/nar\/gkw696","article-title":"Effect of magnesium ions on the structure of DNA thin films: an infrared spectroscopy study","volume":"44","author":"Serec","year":"2016","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.psj.2026.107456_bib0041","doi-asserted-by":"crossref","first-page":"561","DOI":"10.3390\/molecules25030561","article-title":"Molecular spectroscopic markers of DNA damage","volume":"25","author":"Sofi\u0144ska","year":"2020","journal-title":"Molecules"},{"key":"10.1016\/j.psj.2026.107456_bib0042","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1007\/s11032-013-9963-4","article-title":"Fourier transform infrared (FT-IR) spectroscopy of genomic DNA to discriminate F1 progenies from their paternal lineage of Chinese cabbage (Brassica rapa subsp. pekinensis)","volume":"33","author":"Song","year":"2014","journal-title":"Mol. Breeding"},{"key":"10.1016\/j.psj.2026.107456_bib0043","doi-asserted-by":"crossref","first-page":"451","DOI":"10.1111\/agec.12502","article-title":"Understanding farmers\u2019 preference for traits of chickens in rural Ethiopia","volume":"50","author":"Terfa","year":"2019","journal-title":"Agric. Econ."},{"key":"10.1016\/j.psj.2026.107456_bib0044","doi-asserted-by":"crossref","first-page":"104","DOI":"10.1016\/j.molstruc.2009.06.003","article-title":"FTIR microspectroscopic imaging as a new tool to distinguish chemical composition of mouse blastocyst","volume":"933","author":"Thumanu","year":"2009","journal-title":"J. Mol. Struct."},{"key":"10.1016\/j.psj.2026.107456_bib0046","article-title":"Applications of genotyping-by-sequencing (GBS) in maize genetics and breeding","volume":"10","author":"Wang","year":"2020","journal-title":"Sci. Rep."},{"key":"10.1016\/j.psj.2026.107456_bib0047","doi-asserted-by":"crossref","first-page":"697","DOI":"10.1111\/age.12349","article-title":"Genetic diversity and population structure of six Chinese indigenous pig breeds in the Taihu Lake region revealed by sequencing data","volume":"46","author":"Wang","year":"2015","journal-title":"Anim. Genet."},{"key":"10.1016\/j.psj.2026.107456_bib0048","doi-asserted-by":"crossref","first-page":"5439","DOI":"10.1093\/nar\/gkr175","article-title":"Monitoring the reversible B to A-like transition of DNA in eukaryotic cells using Fourier transform infrared spectroscopy","volume":"39","author":"Whelan","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.psj.2026.107456_bib0049","doi-asserted-by":"crossref","first-page":"1949","DOI":"10.3390\/ani13121949","article-title":"Environmental and socio\u2013cultural factors impacting the unique gene pool pattern of Mae Hong-Son chicken","volume":"13","author":"Wongloet","year":"2023","journal-title":"Animals"},{"key":"10.1016\/j.psj.2026.107456_bib0050","unstructured":"World Bank. 2021. Lao PDR Country Economic Memorandum. The Limits of Lao PDR\u2019s Growth Model Have Become Apparent- Summary World Bank."},{"key":"10.1016\/j.psj.2026.107456_bib0051","doi-asserted-by":"crossref","first-page":"869","DOI":"10.1079\/BJN20041298","article-title":"Application of advanced synchrotron radiation-based fourier transform infrared (SR-FTIR) microspectroscopy to animal nutrition and feed science: a novel approach","volume":"92","author":"Yu","year":"2004","journal-title":"Br. J. Nutr."},{"key":"10.1016\/j.psj.2026.107456_bib0052","doi-asserted-by":"crossref","first-page":"827","DOI":"10.1016\/j.bbagen.2011.06.010","article-title":"Pre-screening and follow-up of childhood acute leukemia using biochemical infrared analysis of peripheral blood mononuclear cells","volume":"1810","author":"Zelig","year":"2011","journal-title":"Biochim. Biophys. Acta (BBA)-Gener. Subj."}],"container-title":["Poultry Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579126010862?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0032579126010862?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2026,10,27]],"date-time":"2026-10-27T20:04:02Z","timestamp":1793131442000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0032579126010862"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2026,11]]},"references-count":52,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2026,11]]}},"alternative-id":["S0032579126010862"],"URL":"https:\/\/doi.org\/10.1016\/j.psj.2026.107456","relation":{},"ISSN":["0032-5791"],"issn-type":[{"value":"0032-5791","type":"print"}],"subject":[],"published":{"date-parts":[[2026,11]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Breed classification of Lao People's Democratic Republic (Lao PDR) and Thai native chickens using synchrotron radiation-based Fourier transform infrared spectroscopy and genotyping by sequencing","name":"articletitle","label":"Article Title"},{"value":"Poultry Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.psj.2026.107456","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2026 The Authors. Published by Elsevier Inc. on behalf of Poultry Science Association Inc.","name":"copyright","label":"Copyright"}],"article-number":"107456"}}