{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,8]],"date-time":"2026-10-08T04:43:16Z","timestamp":1791434596665,"version":"4.3.3"},"reference-count":25,"publisher":"Elsevier BV","issue":"3","license":[{"start":{"date-parts":[[2019,4,1]],"date-time":"2019-04-01T00:00:00Z","timestamp":1554076800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2023,11,22]],"date-time":"2023-11-22T00:00:00Z","timestamp":1700611200000},"content-version":"vor","delay-in-days":1696,"URL":"http:\/\/www.elsevier.com\/open-access\/userlicense\/1.0\/"}],"funder":[{"DOI":"10.13039\/501100003762","name":"Institut Pasteur","doi-asserted-by":"crossref","id":[{"id":"10.13039\/501100003762","id-type":"DOI","asserted-by":"crossref"}]},{"name":"French Government's Investissement d'Avenir program Laboratoire d'Excellence Integrative Biology of Emerging Infectious Diseases","award":["ANR-10-LABX-62-IBEID"],"award-info":[{"award-number":["ANR-10-LABX-62-IBEID"]}]},{"name":"MedVetKlebs project"},{"name":"European Union's Horizon 2020 research and innovation programme","award":["773830"],"award-info":[{"award-number":["773830"]}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Research in Microbiology"],"published-print":{"date-parts":[[2019,4]]},"DOI":"10.1016\/j.resmic.2019.02.003","type":"journal-article","created":{"date-parts":[[2019,2,25]],"date-time":"2019-02-25T12:08:41Z","timestamp":1551096521000},"page":"165-170","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":117,"title":["Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp.\u00a0tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola\u00a0subsp. nov."],"prefix":"10.1016","volume":"170","author":[{"given":"Carla","family":"Rodrigues","sequence":"first","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Virginie","family":"Passet","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Andriniaina","family":"Rakotondrasoa","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Thierno Abdoulaye","family":"Diallo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alexis","family":"Criscuolo","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sylvain","family":"Brisse","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"78","reference":[{"key":"10.1016\/j.resmic.2019.02.003_bib1","series-title":"The prokaryotes","article-title":"The genus Klebsiella","author":"Brisse","year":"2006"},{"key":"10.1016\/j.resmic.2019.02.003_bib2","doi-asserted-by":"crossref","first-page":"915","DOI":"10.1099\/00207713-51-3-915","article-title":"Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping","volume":"51","author":"Brisse","year":"2001","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib3","doi-asserted-by":"crossref","first-page":"1881","DOI":"10.1111\/1462-2920.13689","article-title":"Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae","volume":"19","author":"Blin","year":"2017","journal-title":"Environ Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib4","doi-asserted-by":"crossref","first-page":"3146","DOI":"10.1099\/ijs.0.062737-0","volume":"64","author":"Brisse","year":"2014","journal-title":"Int J Syst Evol Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib5","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1078\/0723-2020-00261","article-title":"Klebsiella variicola, a novel species with clinical and plant-associated isolates","volume":"27","author":"Rosenblueth","year":"2004","journal-title":"Syst Appl Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib6","doi-asserted-by":"crossref","DOI":"10.1128\/genomeA.01057-17","article-title":"Whole-genome sequencing of a human clinical isolate of the novel species Klebsiella quasivariicola sp. nov","volume":"5","author":"Long","year":"2017","journal-title":"Genome Announc"},{"key":"10.1016\/j.resmic.2019.02.003_bib7","doi-asserted-by":"crossref","first-page":"942","DOI":"10.1111\/j.1469-0691.2004.00973.x","article-title":"Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates","volume":"10","author":"Brisse","year":"2004","journal-title":"Clin Microbiol Infect"},{"key":"10.1016\/j.resmic.2019.02.003_bib8","doi-asserted-by":"crossref","first-page":"801","DOI":"10.1099\/jmm.0.051334-0","article-title":"Fatal sepsis caused by an unusual Klebsiella species that was misidentified by an automated identification system","volume":"62","author":"Seki","year":"2013","journal-title":"J\u00a0Med Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib9","doi-asserted-by":"crossref","DOI":"10.1128\/mSphereDirect.00290-17","article-title":"Whole-genome sequencing of human clinical Klebsiella pneumoniae isolates reveals misidentification and misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and Klebsiella quasipneumoniae","volume":"2","author":"Long","year":"2017","journal-title":"mSphere"},{"key":"10.1016\/j.resmic.2019.02.003_bib10","doi-asserted-by":"crossref","first-page":"5149","DOI":"10.1128\/AAC.49.12.5149-5152.2005","article-title":"Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B","volume":"49","author":"Fevre","year":"2005","journal-title":"Antimicrob Agents Chemother"},{"key":"10.1016\/j.resmic.2019.02.003_bib11","doi-asserted-by":"crossref","first-page":"2400","DOI":"10.1128\/AAC.48.7.2400-2408.2004","article-title":"Diversity and Evolution of the class a chromosomal beta-lactamase gene in Klebsiella pneumoniae","volume":"48","author":"Haeggman","year":"2004","journal-title":"Antimicrob Agents Chemother"},{"key":"10.1016\/j.resmic.2019.02.003_bib12","doi-asserted-by":"crossref","first-page":"3000","DOI":"10.3389\/fmicb.2018.03000","article-title":"Identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae, Klebsiella variicola and related phylogroups by MALDI-TOF mass spectrometry","volume":"9","author":"Rodrigues","year":"2018","journal-title":"Front Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib13","doi-asserted-by":"crossref","first-page":"422","DOI":"10.1016\/j.ijmm.2017.07.006","article-title":"Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya","volume":"307","author":"Henson","year":"2017","journal-title":"Int J Med Microbiol IJMM"},{"key":"10.1016\/j.resmic.2019.02.003_bib14","doi-asserted-by":"crossref","first-page":"455","DOI":"10.1089\/cmb.2012.0021","article-title":"SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing","volume":"19","author":"Bankevich","year":"2012","journal-title":"J\u00a0Comput Biol"},{"key":"10.1016\/j.resmic.2019.02.003_bib15","first-page":"2068","article-title":"Prokka: rapid prokaryotic genome annotation","volume":"30","author":"Seemann","year":"2014","journal-title":"Bioinf Oxf Engl"},{"key":"10.1016\/j.resmic.2019.02.003_bib16","first-page":"929","article-title":"JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison","volume":"32","author":"Richter","year":"2016","journal-title":"Bioinf Oxf Engl"},{"key":"10.1016\/j.resmic.2019.02.003_bib17","doi-asserted-by":"crossref","first-page":"60","DOI":"10.1186\/1471-2105-14-60","article-title":"Genome sequence-based species delimitation with confidence intervals and improved distance functions","volume":"14","author":"Meier-Kolthoff","year":"2013","journal-title":"BMC Bioinf"},{"key":"10.1016\/j.resmic.2019.02.003_bib18","doi-asserted-by":"crossref","first-page":"3691","DOI":"10.1093\/bioinformatics\/btv421","article-title":"Roary: rapid large-scale prokaryote pan genome analysis","volume":"31","author":"Page","year":"2015","journal-title":"Bioinformatics"},{"key":"10.1016\/j.resmic.2019.02.003_bib19","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gku1196","article-title":"Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins","volume":"43","author":"Croucher","year":"2015","journal-title":"Nucleic Acids Res"},{"key":"10.1016\/j.resmic.2019.02.003_bib20","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0009490","article-title":"FastTree 2--approximately maximum-likelihood trees for large alignments","volume":"5","author":"Price","year":"2010","journal-title":"PLoS One"},{"key":"10.1016\/j.resmic.2019.02.003_bib21","doi-asserted-by":"crossref","first-page":"630","DOI":"10.1007\/s00239-008-9115-3","article-title":"Is 16S rDNA a reliable phylogenetic marker to characterize relationships below the family level in the Enterobacteriaceae?","volume":"66","author":"Naum","year":"2008","journal-title":"J\u00a0Mol Evol"},{"key":"10.1016\/j.resmic.2019.02.003_bib22","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1078\/1438-4221-00228","article-title":"Sequencing of 16S rDNA of Klebsiella: taxonomic relations within the genus and to other Enterobacteriaceae","volume":"292","author":"Boye","year":"2003","journal-title":"Int J Med Microbiol"},{"key":"10.1016\/j.resmic.2019.02.003_bib23","doi-asserted-by":"crossref","first-page":"1879","DOI":"10.1128\/AAC.01605-13","article-title":"Characterization of Klebsiella sp. strain 10982, a colonizer of humans that contains novel antibiotic resistance alleles and exhibits genetic similarities to plant and clinical Klebsiella isolates","volume":"58","author":"Hazen","year":"2014","journal-title":"Antimicrob Agents Chemother"},{"key":"10.1016\/j.resmic.2019.02.003_bib24","doi-asserted-by":"crossref","first-page":"19126","DOI":"10.1073\/pnas.0906412106","article-title":"Shifting the genomic gold standard for the prokaryotic species definition","volume":"106","author":"Richter","year":"2009","journal-title":"Proc Natl Acad Sci USA"},{"key":"10.1016\/j.resmic.2019.02.003_bib25","doi-asserted-by":"crossref","first-page":"2567","DOI":"10.1073\/pnas.0409727102","article-title":"Genomic insights that advance the species definition for prokaryotes","volume":"102","author":"Konstantinidis","year":"2005","journal-title":"Proc Natl Acad Sci USA"}],"updated-by":[{"DOI":"10.1016\/j.resmic.2019.09.001","type":"erratum","label":"Erratum","source":"publisher","updated":{"date-parts":[[2019,9,1]],"date-time":"2019-09-01T00:00:00Z","timestamp":1567296000000}}],"container-title":["Research in Microbiology"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0923250819300191?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0923250819300191?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2024,1,26]],"date-time":"2024-01-26T18:01:34Z","timestamp":1706292094000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0923250819300191"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2019,4]]},"references-count":25,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2019,4]]}},"alternative-id":["S0923250819300191"],"URL":"https:\/\/doi.org\/10.1016\/j.resmic.2019.02.003","relation":{"has-preprint":[{"id-type":"doi","id":"10.1101\/516278","asserted-by":"object"}]},"ISSN":["0923-2508"],"issn-type":[{"value":"0923-2508","type":"print"}],"subject":[],"published":{"date-parts":[[2019,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp.\u00a0tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola\u00a0subsp. nov.","name":"articletitle","label":"Article Title"},{"value":"Research in Microbiology","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.resmic.2019.02.003","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"\u00a9 2019 Institut Pasteur. Published by Elsevier Masson SAS.","name":"copyright","label":"Copyright"}]}}