{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,27]],"date-time":"2026-01-27T07:53:34Z","timestamp":1769500414835,"version":"3.49.0"},"reference-count":47,"publisher":"Elsevier BV","license":[{"start":{"date-parts":[[2016,4,1]],"date-time":"2016-04-01T00:00:00Z","timestamp":1459468800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/tdm\/userlicense\/1.0\/"},{"start":{"date-parts":[[2016,4,1]],"date-time":"2016-04-01T00:00:00Z","timestamp":1459468800000},"content-version":"tdm","delay-in-days":0,"URL":"https:\/\/www.elsevier.com\/legal\/tdmrep-license"}],"funder":[{"name":"Agro-scientific Research","award":["201303044"],"award-info":[{"award-number":["201303044"]}]},{"name":"Agro-scientific Research","award":["2014PY016"],"award-info":[{"award-number":["2014PY016"]}]}],"content-domain":{"domain":["elsevier.com","sciencedirect.com"],"crossmark-restriction":true},"short-container-title":["Research in Veterinary Science"],"published-print":{"date-parts":[[2016,4]]},"DOI":"10.1016\/j.rvsc.2016.01.013","type":"journal-article","created":{"date-parts":[[2016,1,18]],"date-time":"2016-01-18T13:01:31Z","timestamp":1453122091000},"page":"23-27","update-policy":"https:\/\/doi.org\/10.1016\/elsevier_cm_policy","source":"Crossref","is-referenced-by-count":16,"special_numbering":"C","title":["Genome sequencing of a virulent avian Pasteurella multocida strain GX-Pm reveals the candidate genes involved in the pathogenesis"],"prefix":"10.1016","volume":"105","author":[{"given":"Chengjie","family":"Yu","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Suolang","family":"Sizhu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qingping","family":"Luo","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xuewen","family":"Xu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lei","family":"Fu","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anding","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"78","reference":[{"key":"10.1016\/j.rvsc.2016.01.013_bb0005","doi-asserted-by":"crossref","first-page":"198","DOI":"10.1271\/bbb.120656","article-title":"Role of nitric oxide-detoxifying enzymes in the virulence of Pseudomonas aeruginosa against the silkworm, Bombyx mori","volume":"77","author":"Arai","year":"2013","journal-title":"Biosci. Biotechnol. Biochem."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0010","doi-asserted-by":"crossref","first-page":"28039","DOI":"10.1074\/jbc.M605174200","article-title":"Maintenance of nitric oxide and redox homeostasis by the salmonella flavohemoglobin hmp","volume":"281","author":"Bang","year":"2006","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0015","doi-asserted-by":"crossref","first-page":"5955","DOI":"10.1128\/IAI.70.11.5955-5964.2002","article-title":"Characterization of the Pasteurella multocida hgbA gene encoding a hemoglobin-binding protein","volume":"70","author":"Bosch","year":"2002","journal-title":"Infect. Immun."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0020","doi-asserted-by":"crossref","first-page":"3033","DOI":"10.1128\/JCM.00005-08","article-title":"Opa protein repertoires of disease-causing and carried meningococci","volume":"46","author":"Callaghan","year":"2000","journal-title":"J. Clin. Microbiol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0025","first-page":"481","article-title":"Studies on Pasteurella multocida. I. A hemagglutination test for the identification of serological types","volume":"16","author":"Carter","year":"1955","journal-title":"Am. J. Vet. Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0030","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1093\/bioinformatics\/btn578","article-title":"DNAPlotter: circular and linear interactive genome visualization","volume":"25","author":"Carver","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.rvsc.2016.01.013_bb0035","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1046\/j.1365-2958.2003.03580.x","article-title":"Prophages and bacterial genomics: what have we learned so far?","volume":"49","author":"Casjens","year":"2003","journal-title":"Mol. Microbiol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0040","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1080\/03079459708419228","article-title":"Avian pasteurellosis: taxonomy of the organisms involved and aspects of pathogenesis","volume":"26","author":"Christensen","year":"1997","journal-title":"Avian Pathol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0045","doi-asserted-by":"crossref","first-page":"626","DOI":"10.20506\/rst.19.2.1236","article-title":"Fowl cholera","volume":"19","author":"Christensen","year":"2000","journal-title":"Rev. Sci. Tech."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0050","doi-asserted-by":"crossref","first-page":"287","DOI":"10.1016\/S0882-4010(03)00062-7","article-title":"Functional characterization of HgbB, a new hemoglobin binding protein of Pasteurella multocida","volume":"34","author":"Cox","year":"2003","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0055","doi-asserted-by":"crossref","first-page":"e11147","DOI":"10.1371\/journal.pone.0011147","article-title":"progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement","volume":"5","author":"Darling","year":"2010","journal-title":"PloS one"},{"key":"10.1016\/j.rvsc.2016.01.013_bb0060","doi-asserted-by":"crossref","first-page":"414","DOI":"10.1038\/nrmicro884","article-title":"Genomic islands in pathogenic and environmental microorganisms","volume":"2","author":"Dobrindt","year":"2004","journal-title":"Nat. Rev. Microbiol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0065","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1016\/j.vetmic.2005.12.012","article-title":"Virulence genotype of Pasteurella multocida strains isolated from different hosts with various disease status","volume":"114","author":"Ewers","year":"2006","journal-title":"Vet. Microbiol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0070","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1006\/mpat.2000.0365","article-title":"Identification of Pasteurella multocida virulence genes in a septicemic mouse model using signature-tagged mutagenesis","volume":"29","author":"Fuller","year":"2000","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0075","doi-asserted-by":"crossref","first-page":"129","DOI":"10.2460\/ajvr.1977.38.01.129","article-title":"Use of bacteriophages as an adjunct in the identification of Pasteurella multocida","volume":"38","author":"Gadberry","year":"1977","journal-title":"Am. J. Vet. Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0080","first-page":"50","article-title":"Neisseria meningitidis, pathogenetic mechanisms to overcome the human immune defences","volume":"53","author":"Gasparini","year":"2012","journal-title":"J. Prev. Med. Hyg."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0085","doi-asserted-by":"crossref","first-page":"315","DOI":"10.2307\/1587901","article-title":"Studies on Pasteurellosis. V. Two immunogenic types of Pasteurella multocida associated with fowl cholera","volume":"6","author":"Heddleston","year":"1962","journal-title":"Avian Dis."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0090","doi-asserted-by":"crossref","first-page":"925","DOI":"10.2307\/1588773","article-title":"Fowl cholera: gel diffusion precipitin test for serotyping Pasteurella multocida from avian species","volume":"16","author":"Heddleston","year":"1972","journal-title":"Avian Dis."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0095","doi-asserted-by":"crossref","first-page":"18605","DOI":"10.1074\/jbc.M109.008763","article-title":"Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites","volume":"284","author":"Hurley","year":"2009","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0100","doi-asserted-by":"crossref","first-page":"106","DOI":"10.1186\/1471-2180-13-106","article-title":"Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity","volume":"13","author":"Johnson","year":"2013","journal-title":"BMC Microbiol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0105","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1128\/JB.02085-14","article-title":"Flavobacterium johnsoniae PorV is required for secretion of a subset of proteins targeted to the type IX secretion system","volume":"197","author":"Kharade","year":"2015","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0110","doi-asserted-by":"crossref","first-page":"R12","DOI":"10.1186\/gb-2004-5-2-r12","article-title":"Versatile and open software for comparing large genomes","volume":"5","author":"Kurtz","year":"2004","journal-title":"Genome Biol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0115","doi-asserted-by":"crossref","first-page":"3100","DOI":"10.1093\/nar\/gkm160","article-title":"RNAmmer: consistent and rapid annotation of ribosomal RNA genes","volume":"35","author":"Lagesen","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0120","doi-asserted-by":"crossref","first-page":"664","DOI":"10.1093\/bioinformatics\/btp030","article-title":"IslandViewer: an integrated interface for computational identification and visualization of genomic islands","volume":"25","author":"Langille","year":"2009","journal-title":"Bioinformatics"},{"key":"10.1016\/j.rvsc.2016.01.013_bb0125","doi-asserted-by":"crossref","first-page":"D443","DOI":"10.1093\/nar\/gkn656","article-title":"ARDB\u2013antibiotic resistance genes database","volume":"37","author":"Liu","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0130","doi-asserted-by":"crossref","first-page":"3292","DOI":"10.1128\/JB.00215-12","article-title":"Complete genome sequence of Pasteurella multocida HN06, a toxigenic strain of serogroup D","volume":"194","author":"Liu","year":"2012","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0135","doi-asserted-by":"crossref","first-page":"955","DOI":"10.1093\/nar\/25.5.955","article-title":"tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence","volume":"25","author":"Lowe","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0140","doi-asserted-by":"crossref","first-page":"3460","DOI":"10.1073\/pnas.051634598","article-title":"Complete genomic sequence of Pasteurella multocida, Pm70","volume":"98","author":"May","year":"2001","journal-title":"Proc. Natl. Acad. Sci. U. S. A."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0145","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0003991","article-title":"Pasteurellaceae ComE1 proteins combine the properties of fibronectin adhesins and DNA binding competence proteins","volume":"3","author":"Mullen","year":"2008","journal-title":"PLoS One"},{"key":"10.1016\/j.rvsc.2016.01.013_bb0150","doi-asserted-by":"crossref","first-page":"890","DOI":"10.1128\/JB.183.3.890-896.2001","article-title":"Characterization of a novel transferrin receptor in bovine strains of Pasteurella multocida","volume":"183","author":"Ogunnariwo","year":"2001","journal-title":"J. Bacteriol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0155","doi-asserted-by":"crossref","first-page":"193","DOI":"10.2307\/1591351","article-title":"Somatic serotypes of Pasteurella multocida strains isolated from avian hosts (1976\u20131988)","volume":"34","author":"Rhoades","year":"1990","journal-title":"Avian Dis."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0160","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1128\/iai.65.1.339-343.1997","article-title":"Identification, purification, and characterization of the type 4 fimbriae of Pasteurella multocida","volume":"65","author":"Ruffolo","year":"1997","journal-title":"Infect. Immun."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0165","doi-asserted-by":"crossref","first-page":"1060","DOI":"10.1074\/jbc.M113.512095","article-title":"Structure of the Proteus vulgaris HigB-(HigA)2-HigB toxin-antitoxin complex","volume":"289","author":"Schureck","year":"2014","journal-title":"J. Biol. Chem."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0170","doi-asserted-by":"crossref","first-page":"D32","DOI":"10.1093\/nar\/gkj014","article-title":"ISfinder: the reference centre for bacterial insertion sequences","volume":"34","author":"Siguier","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0175","doi-asserted-by":"crossref","first-page":"839","DOI":"10.1128\/IAI.05497-11","article-title":"Infection of mice by Salmonella enterica serovar Enteritidis involves additional genes that are absent in the genome of serovar Typhimurium","volume":"80","author":"Silva","year":"2012","journal-title":"Infect. Immun."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0180","doi-asserted-by":"crossref","first-page":"9","DOI":"10.1016\/j.micpath.2005.05.003","article-title":"Construction and virulence of a Pasteurella multocida fhaB2 mutant in turkeys","volume":"39","author":"Tatum","year":"2005","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0185","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0045954","article-title":"Role of lysozyme inhibitors in the virulence of avian pathogenic Escherichia coli","volume":"7","author":"Vanderkelen","year":"2012","journal-title":"PLoS One"},{"key":"10.1016\/j.rvsc.2016.01.013_bb0190","doi-asserted-by":"crossref","first-page":"83","DOI":"10.1007\/s11259-012-9539-5","article-title":"Profiling of virulence associated genes of Pasteurella multocida isolated from cattle","volume":"37","author":"Verma","year":"2013","journal-title":"Vet. Res. Commun."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0195","doi-asserted-by":"crossref","first-page":"3527","DOI":"10.1128\/IAI.00503-13","article-title":"Edwardsiella tarda Ivy, a lysozyme inhibitor that blocks the lytic effect of lysozyme and facilitates host infection in a manner that is dependent on the conserved cysteine residue","volume":"81","author":"Wang","year":"2013","journal-title":"Infect. Immun."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0200","doi-asserted-by":"crossref","first-page":"1194","DOI":"10.7589\/0090-3558-45.4.1194","article-title":"An outbreak of avian cholera in wild waterfowl in Ordos wetland, Inner Mongolia, China","volume":"45","author":"Wang","year":"2009","journal-title":"J. Wildl. Dis."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0205","doi-asserted-by":"crossref","first-page":"291","DOI":"10.1016\/j.micpath.2011.06.007","article-title":"Identification and analysis of potential virulence-associated genes in Haemophilus parasuis based on genomic subtraction","volume":"51","author":"Wang","year":"2011","journal-title":"Microb. Pathog."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0210","first-page":"1","article-title":"Pasteurella multocida: diseases and pathogenesis","volume":"361","author":"Wilkie","year":"2012","journal-title":"Curr. Top. Microbiol. Immunol."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0215","doi-asserted-by":"crossref","first-page":"4140","DOI":"10.1016\/j.vaccine.2007.03.005","article-title":"Protective immunity conferred by recombinant Pasteurella multocida lipoprotein E (PlpE)","volume":"25","author":"Wu","year":"2007","journal-title":"Vaccine"},{"key":"10.1016\/j.rvsc.2016.01.013_bb0220","first-page":"21","article-title":"Isolation and identification of pasteurella from fowl cholera and the study of its pathogenenicity","volume":"49","author":"Yu","year":"2013","journal-title":"Chin. J. Vet. Med."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0225","doi-asserted-by":"crossref","first-page":"821","DOI":"10.1101\/gr.074492.107","article-title":"Velvet: algorithms for de novo short read assembly using de Bruijn graphs","volume":"18","author":"Zerbino","year":"2008","journal-title":"Genome Res."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0230","first-page":"51","article-title":"Serotyping of Pasteurella multocida isolated from poultry in China","volume":"15","author":"Zheng","year":"1984","journal-title":"Chin. J. Anim. Vet. Sci."},{"key":"10.1016\/j.rvsc.2016.01.013_bb0235","doi-asserted-by":"crossref","first-page":"W347","DOI":"10.1093\/nar\/gkr485","article-title":"PHAST: a fast phage search tool","volume":"39","author":"Zhou","year":"2011","journal-title":"Nucleic Acids Res."}],"container-title":["Research in Veterinary Science"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0034528816300121?httpAccept=text\/xml","content-type":"text\/xml","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/api.elsevier.com\/content\/article\/PII:S0034528816300121?httpAccept=text\/plain","content-type":"text\/plain","content-version":"vor","intended-application":"text-mining"}],"deposited":{"date-parts":[[2025,9,22]],"date-time":"2025-09-22T04:03:18Z","timestamp":1758513798000},"score":1,"resource":{"primary":{"URL":"https:\/\/linkinghub.elsevier.com\/retrieve\/pii\/S0034528816300121"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,4]]},"references-count":47,"alternative-id":["S0034528816300121"],"URL":"https:\/\/doi.org\/10.1016\/j.rvsc.2016.01.013","relation":{},"ISSN":["0034-5288"],"issn-type":[{"value":"0034-5288","type":"print"}],"subject":[],"published":{"date-parts":[[2016,4]]},"assertion":[{"value":"Elsevier","name":"publisher","label":"This article is maintained by"},{"value":"Genome sequencing of a virulent avian Pasteurella multocida strain GX-Pm reveals the candidate genes involved in the pathogenesis","name":"articletitle","label":"Article Title"},{"value":"Research in Veterinary Science","name":"journaltitle","label":"Journal Title"},{"value":"https:\/\/doi.org\/10.1016\/j.rvsc.2016.01.013","name":"articlelink","label":"CrossRef DOI link to publisher maintained version"},{"value":"article","name":"content_type","label":"Content Type"},{"value":"Copyright \u00a9 2016 Elsevier Ltd. All rights reserved.","name":"copyright","label":"Copyright"}]}}